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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 720 fasta sequence
[CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA-AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC-CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG-CTCCTGGCGT-TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT-GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG-AGAGGTTCAC-TTCAAAAACATC-GGTCGATCA-TGGGCCATTA-CCGCCGTTCTTC-TTGGTGGCT-ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG-TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTCAACAAAAAA]
[+] EMBL CF334665 [CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTCTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCC ]
[+] EMBL CF332656 [ CCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTCTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAAC ]
[+] EMBL C27587 [ CTGCAGCCGCGATCGCTGGCAGCAANANGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGG GCTCGCCGTCCCCGCACTCATTTCTTCCGAGGTCCGCGGCGGCATTCTCAGCCAGCGCAAG CAGNCTCCTGG GTNTCACGAGGCAGGGAGCGGATNTNCCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTNCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGTGGGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAGAAGAGGTTCACTTTCAAAAACATCGGGTCGATCATTGGGCCATTACCCGCCGTTCTTCTTTGGTGGCTAACTTCACTtngct ]
[-] EMBL CF334664 [ AAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTAT TGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTTTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTG TTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTCAACAAAAAA]
consensusID : consensus_9228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[CTGCAGCCGCGATCGCTGGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGCANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACAAGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAATTNAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAAACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCCATNCCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAACCNNGGAAAAAAGGGAATNTTTAGGGATTAAGAANCCNCCTTNNGGGGAAATTTAAGGNNCCNNNNTTNAAATTTGGGNTTTTTANTTNNNTNCCTGGGATNTACGANCTTTTNTCCGTAN]
[+] EMBL AU085748 [CTGCAGCCGCGATCGCTGGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGCANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACAAGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAATTNAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAAACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCCATNCCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAACCNNGGAAAAAAGGGAATNTTTAGGGATTAAGAANCCNCCTTNNGGGGAAATTTAAGGNNCCNNNNTTNAAATTTGGGNTTTTTANTTNNNTNCCTGGGATNTACGANCTTTTNTCCGTAN]
consensusID : consensus_9228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[TAAATGCACTGCTGGATGAAATTTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGGTAATGGTGGGCAAANCCATTTCAAACTTTGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACATCGGTCGATCATGGGCCATTACCGCCGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97132 [TAAATGCACTGCTGGATGAAATTTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGGTAATGGTGGGCAAANCCATTTCAAACTTTGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACATCGGTCGATCATGGGCCATTACCGCCGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9228#0 CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCA 60
consensus_9228#2 ------------------------------------------------------------
consensus_9228#1 -------------------------------------------CTGCAGCCGCGATCGCT 17
consensus_9228#0 GCGAAAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAA 120
consensus_9228#2 ------------------------------------------------------------
consensus_9228#1 GGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCG 77
consensus_9228#0 GGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGCCCTTTCTTCCGAGGTCCGCGGCGGCGA 180
consensus_9228#2 ------------------------------------------------------------
consensus_9228#1 GCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGC 137
consensus_9228#0 TCTCAGCCAGCGCAAGCCAGCTCCTGGCGTTCACAAGGCAGGGAGCGGATGCGTCCACAA 240
consensus_9228#2 ------------------------------------------------------------
consensus_9228#1 ANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACA 197
consensus_9228#0 GGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAAT 300
consensus_9228#2 --------------------------------------TAAATGCACTGCTGGATGAAAT 22
consensus_9228#1 AGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAAT 257
************* ********
consensus_9228#0 T-AAGGGGAAGAAGCTCAATTCC-GTGCCATTGG-TAATGG-TGGGCAAAACCATTTCAA 356
consensus_9228#2 TTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGG-TAATGG-TGGGCAAANCCATTTCAA 80
consensus_9228#1 T-NAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAA 316
* ****************** * ** **** * ****** ******** *********
consensus_9228#0 ACTTT-GAAATTGTTCGGAGAGAGGTTCACTTCAAAAA--CATCGGTCGATCA-TGGGCC 412
consensus_9228#2 ACTTT-GAAATTGTTCGGAGAGAGGTTCACTTCAAAAA--CATCGGTCGATCA-TGGGCC 136
consensus_9228#1 ACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCC 376
***** *** ** ** ********* *** ** ***** ****** * *** ******
consensus_9228#0 ATTACCGCCGTTCTTCTTGGTGGCTACTTCA-CTGGCTATTGTATGGAAGAGGAGAAAAC 471
consensus_9228#2 ATTACCGCCGTTCTTCTTGGTGGCTACTTCA-CTGGCTATTGTATGGAAGAGGAGAAAAC 195
consensus_9228#1 ATN-CCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAA--C 433
** ******** * **** ******** * ** ****** ** ** * * *** *
consensus_9228#0 CAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAG 531
consensus_9228#2 CAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAG 255
consensus_9228#1 CNNGGAAAAAAGGGAATNTTTAG-GGATTAAGAANCCNCCTTNNGGGGAA---ATTTAAG 489
* * ******** *** ***** * ******** ** * * * * * ** ****
consensus_9228#0 GTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGT 591
consensus_9228#2 GTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGT 315
consensus_9228#1 GNNCCNNNN---TTNAAATTTGGGNTTTTTANTTNNNTN---------CCTGGGATNTAC 537
* * * **** *** * * * * * * **** *
consensus_9228#0 TAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAG 651
consensus_9228#2 TAACTGCACTGTTT-GTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAG 374
consensus_9228#1 GANCTTTTNTCCGTAN-------------------------------------------- 553
* ** * *
consensus_9228#0 GCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTC 711
consensus_9228#2 GCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA-------- 426
consensus_9228#1 ------------------------------------------------------------
consensus_9228#0 AACAAAAAA 720
consensus_9228#2 ---------
consensus_9228#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||