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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 988 fasta sequence
[CGACCAAAGCTTTGCATAGGAAATTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGCGCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGTCTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAACGCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTGGTCTCGTGTCTCGTTAATTTGCTTACTCGATCGCTACGTTTTCCATTACGAATTTGCGATCGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGC-GGCGGTTGGCGCTGCGACGGAACTGCAGAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAA-GGGTTCCGTGCGCTCGGATTTGG--AGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCAC-GGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCAT-GGAAGTGATACTGGCGCATTCGATTCAGAAGGAAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTCCCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTTTACGATGGGAGCTTTTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAAAAAAAAAAAAAA]
[+] EMBL CF334018 [CGACCAAAGCTTTGCATAGGAAATTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGCGCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGTCTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAACGCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTGGTCTCGTGTCTCGTTAATTTGCTTACTCGATCGCTACGTTTTCCATTACGAATTTGCGATCGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGCGGGCGGTTGGCGCTGCGACGGAACTGCAGAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAAGGGGTTCCGTGCGCTCGGATTTGGNAAGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCACGGGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCATGGGAAGTGATACTGGCGCATTCGATTCAGAAGGAAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTCCCCGATGGCCTGACAG ]
[+] EMBL CF310427 [ TTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGCGCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGTCTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAACGCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTGGTCTCGTGTCTCGTTAATTTGCTTACTCGATCGCTACGTTTTCCATTACGAATTTGCGATCGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGC GGCGGTTGGCGCTGCGACGGAACTGCAGAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAA GGGTTCCGTGCGCTCGGATTTGG AGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCAC GGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCAT GGAAGTGATACTGGCG ]
[+] EMBL CF309746 [ TTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGCGCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGTCTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAACGCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTGGTCTCGTGTCTCGTTAATTTGCTTGCTCGATCGCTACGTTTTCCATTACGAATTTGCGATCGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGC GGCGGTTGGCGCTGCGACGGAACTGCAGAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAA GGGTTCCGTGCGCTCGGATTTGG AGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCAC GGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCAT GGAAGTGATACT ]
[-] EMBL CF309747 [ CCTGAAAATGCAACAGCATCAC GGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCAT GGAAGTGATACTGGCGCATTCGATTCAGAAGG AAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTTTACGATGGGAGCTTTTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAAAAAAAAAAAAAA]
consensusID : consensus_9231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[CGAAGGGTTCCGTGCGCTCGGATTTGGAGTTGTTACCTCAAGATCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAAGCAACAGCATCACGGTTTTCTATCTATATAGAGAACATCCCACAAAGGGGTCCATGGAAGTGATACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGGAGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAAATGTTCCAAAAA]
[-] EMBL CF334017 [CGAAGGGTTCCGTGCGCTCGGATTTGGAGTTGTTACCTCAAGATCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAAGCAACAGCATCACGGTTTTCTATCTATATAGAGAACATCCCACAAAGGGGTCCATGGAAGTGATACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGGAGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAAATGTTCCAAAAA]
consensusID : consensus_9231#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[AGTGATACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGTAATCTCTTGCTAGCTGATAGCTTCAGAAACCATATGCATGTATATCTGTTCAAATGGTCTGCTCACTGTATTCGCTTGCACTACTTTTGTACCACGAGAAAATGCAGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGGAGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAGAAAAAA]
[-] EMBL CF310428 [AGTGATACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGTAATCTCTTGCTAGCTGATAGCTTCAGAAACCATATGCATGTATATCTGTTCAAATGGTCTGCTCACTGTATTCGCTTGCACTACTTTTGTACCACGAGAAAATGCAGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGGAGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9231#0 CGACCAAAGCTTTGCATAGGAAATTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGC 60
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGT 120
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 CTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAAC 180
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTG 240
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GTCTCGTGTCTCGTTAATTTGCTTACTCGATCGCTACGTTTTCCATTACGAATTTGCGAT 300
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 CGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGCGGCGGTTGGCGCTGCGACGGAACTGCA 360
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTA 420
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 CGAAGGGTTCCGTGCGCTCGGATTTGGAGTTGTTACCTCCAGATTCAGCGCGACCGTAAT 480
consensus_9231#1 CGAAGGGTTCCGTGCGCTCGGATTTGGAGTTGTTACCTCAAGAT-CAGCGCGACCGTAAT 59
consensus_9231#2 ------------------------------------------------------AGTGAT 6
** **
consensus_9231#0 CAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCACGGTTTTCTAT 540
consensus_9231#1 CAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAA-GCAACAGCATCACGGTTTTCTAT 118
consensus_9231#2 -ACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATG-AAAAGTTCGATGAGATATTTA 64
* ****** *** * * * ** ** ** * ** ** * * * *
consensus_9231#0 CTATATAGAGAACATCC-ACAAAGGGGTCCATGGAAGTGATACTGGC----GCATTCGAT 595
consensus_9231#1 CTATATAGAGAACATCCCACAAAGGGGTCCATGGAAGTGATACTGGC----GCATTCGAT 174
consensus_9231#2 CCAAGCATGCAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGT 124
* * * ** * * * ** * * ** ***** * *
consensus_9231#0 TCAGAAGGAAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAAC 655
consensus_9231#1 TCAGAAGGAA-GGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAAC 233
consensus_9231#2 GCAAACAGAGAACCCAAGGACTACAAAGGATGGTAA--TCTCTTGCTAGCTGATAGCTTC 182
** * ** * * **** * * * * * * * *** * *
consensus_9231#0 TGTCCCCGATGGCCTG-ACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAAC 714
consensus_9231#1 TGTACCCGATGGCCTG-ACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAAC 292
consensus_9231#2 AGAAACCATATGCATGTATATCTGTTCAAATGGTCTGCTCACTGTATTCGCTTGCACTAC 242
* ** ** ** * * * * ** *** * ** * * * **
consensus_9231#0 CCAAGGACTACAAAGGAT----GGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAG 770
consensus_9231#1 CCAAGGACTACAAAGGAT----GGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAG 348
consensus_9231#2 TTTTGTACCACGAGAAAATGCAGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAG 302
* ** ** * * **************************************
consensus_9231#0 CTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTTTACGATGGG 830
consensus_9231#1 CTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGG 408
consensus_9231#2 CTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGG 362
************************************************** *********
consensus_9231#0 AGCTTTTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTG 890
consensus_9231#1 AGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTG 468
consensus_9231#2 AGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTG 422
***** ******************************************************
consensus_9231#0 GGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGA 950
consensus_9231#1 GGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGA 528
consensus_9231#2 GGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGA 482
************************************************************
consensus_9231#0 ATGGTCCATATATATTTACCCAGGAAAAAAAAAAAAAA 988
consensus_9231#1 ATGGTCCATATATATTTACCCAGGAAATGTTCCAAAAA 566
consensus_9231#2 ATGGTCCATATATATTTACCCAGGAGAAAAAA------ 514
************************* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||