cluster # 9234

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Oryza sativa
cluster # 9234 cluster # 9234 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9234#0 length = 624 sequences # 4

consensus_9234#1 length = 423 sequences # 2

consensusID : consensus_9234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 624
fasta sequence

                              [TAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAAGCACCGGAATAGAGGCCAATGGAAATTCCTACGATC-TGAGCACAAAGTTGCTCCATCTACGCATGGCACCCATCCGAAAATTTAATTGCTTGGTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGGGATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTGGTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTTGGGCCGGTCACATGCTGTTCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAA---AAA---------AAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101474             [TAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAAGCACCGGAATAGAGGCCAATGGAAATTCCTACGATC TGAGCACAAAGTTGCTCCATCTACGCATGGCACCCATCCGAAAATTTAATTGCTTGGTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGGGATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTGGTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTTGGGCCGGTCACATGCTGTTCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAA   AAA         AAAAAAAAAAAAAA         ]
[+] EMBL AU165696             [                                                    AGGCCAATGGAAATTCCTACGATCTTGAGCNCAAAGTTGCTCCATCT CGCATGGCACCCATCCGAAAATTTAATTGCTT GTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGGGATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTGGTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTG TTTTTTTTGGGCCGGTCACATGCTGTTCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAAGTGATATTTCTTTCCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF335691             [                                                                                                                                                                                                                                                                                                                 TTGAGTGCC TATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAA   A                                  ]
[-] EMBL CF335692             [                                                                                                                                                                                                                                                                                                                  TGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAA   AA                                 ]




>consensus_9234#0
TAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAAGCACCGGAATAGAGGCCAAT
GGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTACGCATGGCACCCATCCGAAAA
TTTAATTGCTTGGTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGG
GATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTG
GTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTTGGGCCGGTCACATGCTGT
TCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCG
GGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAG
GTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGT
TGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTAT
GGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9234#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 423
fasta sequence

                              [AGTCGTGATTACATGACACTGAAGCTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGCTATGTGATTTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTGTCAAAGCGGAGATGGATTGCGAGTAG-AACTGGTTCTTACAGCAACATTTTTCGTGTGTTTGGTTGTGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTACTAGGAGGCAACTTCAGAATCCCACAAGGCCTGCTAGATCTCTAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAGCGGNANATAAGAGGCCAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCNAAAATTTTA]

[+] EMBL C73429               [AGTCGTGATTACATGACACTGAAGCTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGCTATGTGATTTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTGTCAAAGCGGAGATGGATTGCGAGTAG AACTGGTTCTTACAGCAACATTTTTCGTGTGTTTGGTTGTGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTACTAGGAGGCAACTTCAGAATCCCACAAGGCCTGCTAGATCTCTAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAGCGGNANATAAGAGGCCAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCNAAAATTTTA]
[+] EMBL AU030041             [                                                                                    aaactgcAGCTATGTGATTTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTGTCAAAGCGGAGATGGATTGCGAGTAGCAACTGGTTCTTACAGCAACATTTTTCGTGTGTTTGGTTGTGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTACTAGGAGGCAACTTCAGAATCCCACAAGGCCTGCTAGATCTCTAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAANCGGGNA AT AGAGGCCAATGGGAATTCCTACGATCTGAGCAC AAGTTGCTCCATCTCGCATGGGACCC TCCGGAAATT   ]




>consensus_9234#1
AGTCGTGATTACATGACACTGAAGCTTTGGGATATTAACATGAACTCTGGTCCAGTTGCA
ACATTCCAGGTTCATGAGTATTTAAGGCCCAAGCTATGTGATTTATATGAAAATGATTCC
ATTTTTGATAAGTTTGAGTGCTGTCAAAGCGGAGATGGATTGCGAGTAGAACTGGTTCTT
ACAGCAACATTTTTCGTGTGTTTGGTTGTGGCACTGGTAGCAATGAGGCAACGACACTTG
AAGCAACTCGAAACCCTACTAGGAGGCAACTTCAGAATCCCACAAGGCCTGCTAGATCTC
TAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAGCGGNANATAAGAGGCCAATG
GAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCNAAAATT
TTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9234#0      TAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAAGCACCGGAATAGAGGCCAAT 60
consensus_9234#1      ------------------------------------------------------------
                                                                                  

consensus_9234#0      GGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTACGCATGGCACCCATCCGAAAA 120
consensus_9234#1      ------------------------------AGTCGTGATTACATGACACTGAAGCTTTGG 30
                                                       * *     **** ***  *  *     

consensus_9234#0      TTTAATTGCTTGGTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGG 180
consensus_9234#1      GATATTAACATGAA--CTCTG-GTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGG 87
                        ** *  * **    * *** *  *** *   ****      * *** *  *   * **

consensus_9234#0      GATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTG 240
consensus_9234#1      CCCAAGCTATGTGAT----TTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTG 143
                         ***    * **     ** *  * *  ** * **  *    *    *** *   ***

consensus_9234#0      GTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTTGGGCCGGTCACATGCTGT 300
consensus_9234#1      TCAAAGCGGAG--ATGGATTGCGAGTAGAACTGGTTCTTACAGCAACATTTTTCGTGTGT 201
                          *** ***    *  ****  ****   ** ** **   *   *  *       ***

consensus_9234#0      TCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCA-AGAGGAAGTGACTCGAT-CATTCC 358
consensus_9234#1      TTGGTTG--TGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTAC 259
                      *   ***  ** **     ***  *   *   * * *   ****  ******  *  * *

consensus_9234#0      CGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTAT 418
consensus_9234#1      TAGGAGGCAACT----TCAGAATCCCAC------------AAGGCCTGCTAGATCTCTAA 303
                        *** *** **    ** ** *                 ********      *  ** 

consensus_9234#0      AGGTTC-ATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAAC 477
consensus_9234#1      GCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAGCGGNANATAAGAGG--------C 355
                          **     *** **   ***  ** *    *   **  *  *   ***        *

consensus_9234#0      TGTTGGGAAT--CTGTGGTTAGATGATAAGG--GGATGATCTTCCGTTGTATTCATGTTG 533
consensus_9234#1      CAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCNA 415
                         *** ***  **  * *  **  * ** *  *    ****  * * * *  ***    

consensus_9234#0      AAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTA 593
consensus_9234#1      AAATTTTA---------------------------------------------------- 423
                      ***** *                                                     

consensus_9234#0      CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 624
consensus_9234#1      -------------------------------