These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 624 fasta sequence [TAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAAGCACCGGAATAGAGGCCAATGGAAATTCCTACGATC-TGAGCACAAAGTTGCTCCATCTACGCATGGCACCCATCCGAAAATTTAATTGCTTGGTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGGGATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTGGTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTTGGGCCGGTCACATGCTGTTCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAA---AAA---------AAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101474 [TAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAAGCACCGGAATAGAGGCCAATGGAAATTCCTACGATC TGAGCACAAAGTTGCTCCATCTACGCATGGCACCCATCCGAAAATTTAATTGCTTGGTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGGGATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTGGTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTTGGGCCGGTCACATGCTGTTCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAA AAA AAAAAAAAAAAAAA ] [+] EMBL AU165696 [ AGGCCAATGGAAATTCCTACGATCTTGAGCNCAAAGTTGCTCCATCT CGCATGGCACCCATCCGAAAATTTAATTGCTT GTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGGGATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTGGTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTG TTTTTTTTGGGCCGGTCACATGCTGTTCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAAGTGATATTTCTTTCCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF335691 [ TTGAGTGCC TATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAA A ] [-] EMBL CF335692 [ TGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTACAAAA AA ] consensusID : consensus_9234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 423 fasta sequence [AGTCGTGATTACATGACACTGAAGCTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGCTATGTGATTTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTGTCAAAGCGGAGATGGATTGCGAGTAG-AACTGGTTCTTACAGCAACATTTTTCGTGTGTTTGGTTGTGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTACTAGGAGGCAACTTCAGAATCCCACAAGGCCTGCTAGATCTCTAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAGCGGNANATAAGAGGCCAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCNAAAATTTTA] [+] EMBL C73429 [AGTCGTGATTACATGACACTGAAGCTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGCTATGTGATTTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTGTCAAAGCGGAGATGGATTGCGAGTAG AACTGGTTCTTACAGCAACATTTTTCGTGTGTTTGGTTGTGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTACTAGGAGGCAACTTCAGAATCCCACAAGGCCTGCTAGATCTCTAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAGCGGNANATAAGAGGCCAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCNAAAATTTTA] [+] EMBL AU030041 [ aaactgcAGCTATGTGATTTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTGTCAAAGCGGAGATGGATTGCGAGTAGCAACTGGTTCTTACAGCAACATTTTTCGTGTGTTTGGTTGTGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTACTAGGAGGCAACTTCAGAATCCCACAAGGCCTGCTAGATCTCTAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAANCGGGNA AT AGAGGCCAATGGGAATTCCTACGATCTGAGCAC AAGTTGCTCCATCTCGCATGGGACCC TCCGGAAATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9234#0 TAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAAGCACCGGAATAGAGGCCAAT 60 consensus_9234#1 ------------------------------------------------------------ consensus_9234#0 GGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTACGCATGGCACCCATCCGAAAA 120 consensus_9234#1 ------------------------------AGTCGTGATTACATGACACTGAAGCTTTGG 30 * * **** *** * * consensus_9234#0 TTTAATTGCTTGGTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGAGGG 180 consensus_9234#1 GATATTAACATGAA--CTCTG-GTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGG 87 ** * * ** * *** * *** * **** * *** * * * ** consensus_9234#0 GATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTG 240 consensus_9234#1 CCCAAGCTATGTGAT----TTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTG 143 *** * ** ** * * * ** * ** * * *** * *** consensus_9234#0 GTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTTGGGCCGGTCACATGCTGT 300 consensus_9234#1 TCAAAGCGGAG--ATGGATTGCGAGTAGAACTGGTTCTTACAGCAACATTTTTCGTGTGT 201 *** *** * **** **** ** ** ** * * * *** consensus_9234#0 TCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCA-AGAGGAAGTGACTCGAT-CATTCC 358 consensus_9234#1 TTGGTTG--TGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTAC 259 * *** ** ** *** * * * * * **** ****** * * * consensus_9234#0 CGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTAT 418 consensus_9234#1 TAGGAGGCAACT----TCAGAATCCCAC------------AAGGCCTGCTAGATCTCTAA 303 *** *** ** ** ** * ******** * ** consensus_9234#0 AGGTTC-ATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAAC 477 consensus_9234#1 GCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAGCGGNANATAAGAGG--------C 355 ** *** ** *** ** * * ** * * *** * consensus_9234#0 TGTTGGGAAT--CTGTGGTTAGATGATAAGG--GGATGATCTTCCGTTGTATTCATGTTG 533 consensus_9234#1 CAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCNA 415 *** *** ** * * ** * ** * * **** * * * * *** consensus_9234#0 AAATTATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTTA 593 consensus_9234#1 AAATTTTA---------------------------------------------------- 423 ***** * consensus_9234#0 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 624 consensus_9234#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||