cluster # 9236

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Oryza sativa
cluster # 9236 cluster # 9236 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9236#0 length = 836 sequences # 2

consensus_9236#1 length = 799 sequences # 4

consensusID : consensus_9236#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 836
fasta sequence

                              [CCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGATGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCATATGTGCTCCGGGCCGCCGCACCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGGTCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCTGGCTCCGCACTCCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAATTCGTCGGTTCAGATTAGCATTTCAGCTCATCCAACCAAGCAGCCATATCCTCCGACTGCACCCACCAGATGGTTGGAATTGAACTATGAAAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGAGGATTTTCATAGCACCGGATAAAATTATCGCACCATTGGATAAGCTTCCAAGCAAAGAATTTGACTAAGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTACCTGCAAGCAATTTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCAAGGGAAATCAGCCGCCGACGACCTATCCAATTTCAAGTCAACTCAAACTCACACTATTTTCTACATGAATAAAATCCCTCACATAGATGTCTTCTTCATAGAACAAGACTTCAAAAATAATGAGATTT]

[+] EMBL CF278850             [CCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGATGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCATATGTGCTCCGGGCCGCCGCACCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGGTCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCTGGCTCCGCACTCCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK067940             [   GTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGATGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCACATGTGCTCCGGGCCGCCGCACCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGGTCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCTGGCTCCGCACTTCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAATTCGTCGGTTCAGATTAGCATTTCAGCTCATCCAACCAAGCAGCCATATCCTCCGACTGCACCCACCAGATGGTTGGAATTGAACTATGAAAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGAGGATTTTCATAGCACCGGATAAAATTATCGCACCATTGGATAAGCTTCCAAGCAAAGAATTTGACTAAGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTACCTGCAAGCAATTTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCAAGGGAAATCAGCCGCCGACGACCTATCCAATTTCAAGTCAACTCAAACTCACACTATTTTCTACATGAATAAAATCCCTCACATAGATGTCTTCTTCATAGAACAAGACTTCAAAAATAATGAGATTT]




>consensus_9236#0
CCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGATGGCTGGAGGCG
GCACTCGCTCGGTGCCGGTGGCTGCCATATGTGCTCCGGGCCGCCGCACCCCTTCTCACT
TGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGGTCATCCGGGTGG
CTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCTGGCTCCGCACTC
CCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTT
GGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAATTCGTCGGTTC
AGATTAGCATTTCAGCTCATCCAACCAAGCAGCCATATCCTCCGACTGCACCCACCAGAT
GGTTGGAATTGAACTATGAAAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTTTATCT
ATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGAGGATTTTCATAG
CACCGGATAAAATTATCGCACCATTGGATAAGCTTCCAAGCAAAGAATTTGACTAAGAGC
AAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTACCTGCAAGCAAT
TTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCAAGGGAAATCAGC
CGCCGACGACCTATCCAATTTCAAGTCAACTCAAACTCACACTATTTTCTACATGAATAA
AATCCCTCACATAGATGTCTTCTTCATAGAACAAGACTTCAAAAATAATGAGATTT

consensusID : consensus_9236#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 799
fasta sequence

                              [CATGTCGTGTGGCCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGATGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCACATGTGCTCCGGGCCGCCGCACCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGGTCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCTGGCTCCGCACTTCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAATTCGTCGGTTCAGATTAGCATTTCAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGAGGATTTTCATAGCACCGGATAAAATTATCGCACCATTGGATAAGC-TTCCAAGCAAAGAATTTGACTAAGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTACCTGCAAGCAATTTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCAAGGGAAATCAGCCGCCGACGACCTACCCAATTTCAAGTCAACTCAAACTCACACTATTTTCTACATGAATAAAATCCCTCACATAGATGTCTTCTTCATAGAACAAGACTTCAAAAATAATGAGATTTAGTATTCCTGACAAAAAA]

[+] EMBL CA764804             [CATGTCGTGTGGCCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGATGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCACATGTGCTCCGGGCCGCCGCACCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGGTCATCCGGGTGGCTGAGGAGAACGGCGGCGCGGCTTGCGCGTGGCCGTCTTCCGCAGGCTGGCTCCGCACTTCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAATTCGTCGGTTCAGATTAGCATTTCAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGAGGATTTTCATAGCACCGGATAAAATTATCGCACCATTGGATAAGCTTTCCAAGCAAAGAATTTGACTAAGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTACC                                                                                                                                                                                                            ]
[+] EMBL CF335955             [CATGTCGTGTGGCCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGATGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCACATGTGCTCCGGGCCGCCGCACCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGGTCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCTGGCTCCGCACTTCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAATTCGTCGGTTCAGATTAGCATTTCAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGG                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK058865             [          GGCCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGATGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCACATGTGCTCCGGGCCGCCGCACCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGGTCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCTGGCTCCGCACTTCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAATTCGTCGGTTCAGATTAGCATTTCAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGAGGATTTTCATAGCACCGGATAAAATTATCGCACCATTGGATAAGC TTCCAAGCAAAGAATTTGACTAAGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTACCTGCAAGCAATTTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCAAGGGAAATCAGCCGCCGACGACCTACCCAATTTCAAGTCAACTCAAACTCACACTATTTTCTACATGAATAAAATCCCTCACATAGATGTCTTCTTCATAGAACAAGACTTCAAAAATAATGAGATTT                  ]
[-] EMBL CF335954             [                                                                                                                                                                                                                                                                                    GGGCCCATCTGCCGATTCAGAGGGCGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGAATTCGTCGGTTCAGATTAGCATTTCAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGAGGATTTTCATAGCACCGGATAAAATTATCGCACCATTGGATAAGC TTCCAAGCAAAGAATTTGACTAAGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTACCTGCAAGCAATTTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCAAGGGAAATCAGCCGCCGACGACCTATCCAATTTCAAGTCAACTCAAACTCACACTATTTTTTACATGAATAAAATCCCTCACATAGATGTTTTTTTCATAGAACAAGACTTCAAAAATAATGAGATTTAGTATTCCTGACAAAAAA]




>consensus_9236#1
CATGTCGTGTGGCCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGA
TGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCACATGTGCTCCGGGCCGCCGCA
CCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGG
TCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCT
GGCTCCGCACTTCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGG
CGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGA
ATTCGTCGGTTCAGATTAGCATTTCAGGACCAAGGCGAAAGTTTTTCATGAATTGGTGTT
TATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGAGGATTTT
CATAGCACCGGATAAAATTATCGCACCATTGGATAAGCTTCCAAGCAAAGAATTTGACTA
AGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTACCTGCAA
GCAATTTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCAAGGGAAA
TCAGCCGCCGACGACCTACCCAATTTCAAGTCAACTCAAACTCACACTATTTTCTACATG
AATAAAATCCCTCACATAGATGTCTTCTTCATAGAACAAGACTTCAAAAATAATGAGATT
TAGTATTCCTGACAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9236#0      ------------CCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGA 48
consensus_9236#1      CATGTCGTGTGGCCGGTGACTGGGAACGGCGGCGCCGCTCCTGTTGTGGTTTGCTAGCGA 60
                                  ************************************************

consensus_9236#0      TGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCATATGTGCTCCGGGCCGCCGCA 108
consensus_9236#1      TGGCTGGAGGCGGCACTCGCTCGGTGCCGGTGGCTGCCACATGTGCTCCGGGCCGCCGCA 120
                      *************************************** ********************

consensus_9236#0      CCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGG 168
consensus_9236#1      CCCCTTCTCACTTGTGTCTCCTTCTGCGTCTCATCTATCAGCTAGGGTTCCGCGGTGTGG 180
                      ************************************************************

consensus_9236#0      TCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCT 228
consensus_9236#1      TCATCCGGGTGGCTGAGGAGAACGGCGGCGCAGCTTGCGCGTGGCCGTCTTCCGCAGGCT 240
                      ************************************************************

consensus_9236#0      GGCTCCGCACTCCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGG 288
consensus_9236#1      GGCTCCGCACTTCCTCTCGCTGTGCTAGCAGCAGATGGGCCCATCTGCCGATTCAGAGGG 300
                      *********** ************************************************

consensus_9236#0      CGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGA 348
consensus_9236#1      CGGTGTACTGTTGGCCTGCGCCCTGCACGTCTCAGGAGGGCCACGGGTTCGCCACCATGA 360
                      ************************************************************

consensus_9236#0      ATTCGTCGGTTCAGATTAGCATTTCAGCTCATCCAACCAAGCAGCCATATCCTCCGACTG 408
consensus_9236#1      ATTCGTCGGTTCAGATTAGCATTTCAG--------------------------------- 387
                      ***************************                                 

consensus_9236#0      CACCCACCAGATGGTTGGAATTGAACTATGAAAGGACCAAGGCGAAAGTTTTTCATGAAT 468
consensus_9236#1      ----------------------------------GACCAAGGCGAAAGTTTTTCATGAAT 413
                                                        **************************

consensus_9236#0      TGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGA 528
consensus_9236#1      TGGTGTTTATCTATTTAGTAGATTCTGGATATCAGTTCCATTACTCAGGGGCAAATCTGA 473
                      ************************************************************

consensus_9236#0      GGATTTTCATAGCACCGGATAAAATTATCGCACCATTGGATAAGCTTCCAAGCAAAGAAT 588
consensus_9236#1      GGATTTTCATAGCACCGGATAAAATTATCGCACCATTGGATAAGCTTCCAAGCAAAGAAT 533
                      ************************************************************

consensus_9236#0      TTGACTAAGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTA 648
consensus_9236#1      TTGACTAAGAGCAAATAACCTTTATCGGAACTGTAACCCACAATCCAGCCACACCACCTA 593
                      ************************************************************

consensus_9236#0      CCTGCAAGCAATTTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCA 708
consensus_9236#1      CCTGCAAGCAATTTCCGTCGTTACTGCATCCAAATCGTCAACCGTTTATGTTTCTGTCCA 653
                      ************************************************************

consensus_9236#0      AGGGAAATCAGCCGCCGACGACCTATCCAATTTCAAGTCAACTCAAACTCACACTATTTT 768
consensus_9236#1      AGGGAAATCAGCCGCCGACGACCTACCCAATTTCAAGTCAACTCAAACTCACACTATTTT 713
                      ************************* **********************************

consensus_9236#0      CTACATGAATAAAATCCCTCACATAGATGTCTTCTTCATAGAACAAGACTTCAAAAATAA 828
consensus_9236#1      CTACATGAATAAAATCCCTCACATAGATGTCTTCTTCATAGAACAAGACTTCAAAAATAA 773
                      ************************************************************

consensus_9236#0      TGAGATTT------------------ 836
consensus_9236#1      TGAGATTTAGTATTCCTGACAAAAAA 799
                      ********