cluster # 9237

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Oryza sativa
cluster # 9237 cluster # 9237 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9237#0 length = 828 sequences # 4

consensus_9237#1 length = 736 sequences # 2

consensusID : consensus_9237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 828
fasta sequence

                              [TTCGTCGGGCTGGTCTTCGCCTGTCTTTCTTTTTCTCTTTTTGTTTATGAAATGCCCTTTTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTTTATTGGT--AAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGTCCGTATGGACACGGTTTGTCATGCTATTCC-AAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCA-CCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACT-CTCTCCCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTCTTATTAGGCTCTCATAGGCATGATCATCAGATTCTGACCTAGATTCCTCTCCCGAAGCTTCGAAACGGTTCTTAGAGGGAATCCAGGATTGGCATGCGCGTTTTCTAGATTCATGGTTTCATCTTCT-AAGCACCCCTTAGTCAATTGGGAGATAAGCATCTGAGAATAAGCAAATGTGAGTGCACAAGTGAAGGTTGAAGAAATAAATTTATAAGGATTCACACATTCTGTTGCTCTCTG]

[-] EMBL CA762514             [TTCGTCGGGCTGGTCTTCGCCTGTCTTTCTTTTTCTCTTTTTGTTTATGAAATGCCCTTTTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTTTATTGGTAAAAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGTCCGTATGGACACGGTTTGTCATGCTATTCC AAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCA CCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACT CTCTCCCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTCTTATTAG                                                                                                                                                                                                                                          ]
[+] EMBL CA762515             [                                 ttttTTTTTTTTTATGAAATGCCTTTCTTTTCTTCTCGCAACGTAAAATACTCCACAGCCTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTCTATTGGT  AAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGCCCGTATGGACACGGTTTGTCATGCTATTCC  AAAAAAAAATTACTTGCCAATTGTATGGACTCCTGTCAGATCA CCTCAAATTTGCATACTGGGCATGAAATCCTCATCCCAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACT CTCTCCCTCAACTACAGATAGTGGCAGGCTGTTTATTTGAATGTCAAAAGCACCCCTGTGATGGGTGTTGCCATCAAGGCTTATTAGGCTCTCATAGGCATGATCATCAGATTCTGACCTAGATTCCTCTCCCGAAGCTTCGAAACGGTTCTTAGAGGGAATCCAGGATTGGCATGCGCGTTTTCTAGATTCATGGTTTCATCTTCT AAGCACCCCT                                                                                                       ]
[-] EMBL AU031904             [                                                                                                                                                                                                             tttttTTTTTATTGGT  AAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGTCCGTATGGACACGGTTTGTCATGCTATTCCAAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCA CCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAANCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGNAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGNATAT                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF336147             [                                                                                                                                                                                                                                                                                                                                                      TGGACTCCTGTCAGATCACCCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACTCCTCTCCCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTCTTATTAGGCTCTCATAGTCATCATCATCAGATTCTGACATAAATTCCTCT CCGAAGTTTCCAAATGCTTCTTCGAGTGAATCCAGTATTGCCATGCGCG TTTCTAGATCCATGTTTTCATC TCTGAAGCATCCTCTAGTCAATTGGGAGATAAGCATCTGAGAATAAGCAAATGTGAGTGCACAAGTGAAGGTTGAAGAAATAAATTTATAAGGATTCACACATTCTGTTGCTCTCTG]




>consensus_9237#0
TTCGTCGGGCTGGTCTTCGCCTGTCTTTCTTTTTCTCTTTTTGTTTATGAAATGCCCTTT
TTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATC
CATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAG
TAACAGCTAACAGGTTACAAGTAACAACGCTTTTTATTGGTAAAAAAAAGAGACGGCTTA
AACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGTCCGTATGGACACGGTTT
GTCATGCTATTCCAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCACCT
CAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTAT
GAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGC
ATATAGGACAGGGTTCATCAGAACAACTCTCTCCCTCAACTACAGATAGTGGCAGGTTGT
TTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTCTTATTAGGCTCT
CATAGGCATGATCATCAGATTCTGACCTAGATTCCTCTCCCGAAGCTTCGAAACGGTTCT
TAGAGGGAATCCAGGATTGGCATGCGCGTTTTCTAGATTCATGGTTTCATCTTCTAAGCA
CCCCTTAGTCAATTGGGAGATAAGCATCTGAGAATAAGCAAATGTGAGTGCACAAGTGAA
GGTTGAAGAAATAAATTTATAAGGATTCACACATTCTGTTGCTCTCTG

consensusID : consensus_9237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 736
fasta sequence

                              [TTTTTTTTTTTTTTTAATAAAAAGCGATAATTGCCACTTGTCTTCCCTGTAGAGGGGTATACCAACGTATACAACAAGGAACACAAGATATTATGAAATGCCTTTCTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGGTGGTCCGTATGGACCACGGTTTGTCATGCTATTCC-AAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAAATCACCTCAAATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACTCTCTCCCTGATAAAAAGGAGAATGCAAGATTAGCTCTACTAAATCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGCATATCCATATCGAGCAAGACCGATTCAGACCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTC]

[+] EMBL CF336146             [TTTTTTTTTTTTTTTAATAAAAAGCGATAATTGCCACTTGTCTTCCCTGTAGAGGGGTATACCAACGTATACAACAAGGAACACAAGATATTATGAAATGCCTTTCTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGGTGGTCCGTATGGACCACGGTTTGTCATGCTATTCC AAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAAATCACCTCAAATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGA                                                                                                                                                                                                                                                                          ]
[-] EMBL AK063791             [                                                                                                      TTTCTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGAT GGTGGTCCGTATGGA CACGGTTTGTCATGCTATTCCAAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCACCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACTCTCTCCCTGATAAAAAGGAGAATGCAAGATTAGCTCTACTAAATCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGCATATCCATATCGAGCAAGACCGATTCAGACCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTC]




>consensus_9237#1
TTTTTTTTTTTTTTTAATAAAAAGCGATAATTGCCACTTGTCTTCCCTGTAGAGGGGTAT
ACCAACGTATACAACAAGGAACACAAGATATTATGAAATGCCTTTCTTTTCTTCTCGCAG
CGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGA
AAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGG
TTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATG
CTATTCCAAAAAATATTTCCGATGGGTGGTCCGTATGGACCACGGTTTGTCATGCTATTC
CAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAAATCACCTCAAATTTGCATA
CTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCA
GGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGG
GTTCATCAGAACAACTCTCTCCCTGATAAAAAGGAGAATGCAAGATTAGCTCTACTAAAT
CCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGCATATCCATATCGAGCAAGACCGATTCAG
ACCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGG
TTGTTGTCATCAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9237#0      ---------------------------------------------TTCGTCGGGCTG-GT 14
consensus_9237#1      TTTTTTTTTTTTTTTAATAAAAAGCGATAATTGCCACTTGTCTTCCCTGTAGAGGGGTAT 60
                                                                      ** * *  *  *

consensus_9237#0      CTTCGCCTGTCTTTCTTTTTCTCTTTTTGTTTATGAAATGCCCTTTTTTTCTTCTCGCAG 74
consensus_9237#1      ACCAACGTATACAACAAGGAACACAAGATATTATGAAATGCCTTTCTTTTCTTCTCGCAG 120
                           * * *    *               ************ ** **************

consensus_9237#0      CGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGA 134
consensus_9237#1      CGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGA 180
                      ************************************************************

consensus_9237#0      AAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGG 194
consensus_9237#1      AAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGG 240
                      ************************************************************

consensus_9237#0      TTACAAGTAACAACGCTTTTTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATG 254
consensus_9237#1      TTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATG 300
                      ******************* ****************************************

consensus_9237#0      CTATTCCAAAAAATATTTCCGATGG-TGGTCCGTATGGAC-ACGGTTTGTCATGCTATTC 312
consensus_9237#1      CTATTCCAAAAAATATTTCCGATGGGTGGTCCGTATGGACCACGGTTTGTCATGCTATTC 360
                      ************************* ************** *******************

consensus_9237#0      CAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCACCTCAGATTTGCATA 372
consensus_9237#1      CAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAAATCACCTCAAATTTGCATA 420
                      **************************************** ********* *********

consensus_9237#0      CTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCA 432
consensus_9237#1      CTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCA 480
                      ************************************************************

consensus_9237#0      GGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGG 492
consensus_9237#1      GGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGG 540
                      ************************************************************

consensus_9237#0      GTTCATCAGAACAACTCTCTCCCTCA-ACTACAGATAGTGGCAGGTTGTTTAT-TTGAAT 550
consensus_9237#1      GTTCATCAGAACAACTCTCTCCCTGATAAAAAGGAGAATGCAAGATTAGCTCTACTAAAT 600
                      ************************ * *  *  ** * **  ** **   * *  * ***

consensus_9237#0      GTCAGAAGCACCCCTGTGATGGTTGT-----TGTCATCAAGTCTTATTAGGCTCTCATAG 605
consensus_9237#1      CCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGCATATCCATATCGAGCAAGACCGATTCAG 660
                        *     * ****    *              *   **  **     ** *      **

consensus_9237#0      GCATGATCATCAGATTCTGACCTAGATTCCTCTCCCGAAGCTTCGAAACGGTTCTTAGAG 665
consensus_9237#1      ACCTCAACTACAGATAGTGGC--AGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGAT 718
                       * * * *  *****  ** *  ** **  *     ***  *  *** *    **  ** 

consensus_9237#0      GGAATCCAGGATTGGCATGCGCGTTTTCTAGATTCATGGTTTCATCTTCTAAGCACCCCT 725
consensus_9237#1      GGTTGTTGTCATCAAGTC------------------------------------------ 736
                      **        **                                                

consensus_9237#0      TAGTCAATTGGGAGATAAGCATCTGAGAATAAGCAAATGTGAGTGCACAAGTGAAGGTTG 785
consensus_9237#1      ------------------------------------------------------------
                                                                                  

consensus_9237#0      AAGAAATAAATTTATAAGGATTCACACATTCTGTTGCTCTCTG 828
consensus_9237#1      -------------------------------------------