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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1131 fasta sequence
[CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA-GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA-TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA-CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA-CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA]
[+] EMBL CF336433 [CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCT CCCGG CGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGAGGGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTT ]
[+] EMBL AU162704 [ CCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGC GCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCG CGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGG AGATACCACAG CTTGTAATTGAGAAGGATAGCNTCCCACATGATGNCCTGGga ]
[+] EMBL AK105178 [ CAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAA ]
[-] EMBL CF336434 [ AAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACGGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATCATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA]
[+] EMBL BQ907526 [ AAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCACTTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACCAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACCTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTAaaaaaaaaa ]
consensusID : consensus_9238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCCTTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTNTCTCAAAAAAAAAAAAAAAAAA]
[+] EMBL AU056641 [CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCCTTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTNTCTCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9238#0 CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGAT 60
consensus_9238#1 ------------------------------------------------------------
consensus_9238#0 GGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGA 120
consensus_9238#1 ------------------------------------------------------------
consensus_9238#0 GGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAAC 180
consensus_9238#1 ------------------------------------------------------------
consensus_9238#0 TCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATT 240
consensus_9238#1 ------------------------------------------------------------
consensus_9238#0 TGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCAC 300
consensus_9238#1 ------------------------------------------------------------
consensus_9238#0 GTATAATTTATGCCAGTACATGGGTGAGGTGGGAGCTAACTTTGAGGTGTACCGCAATGA 360
consensus_9238#1 ------------------------------------------------------------
consensus_9238#0 TGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGG 420
consensus_9238#1 ------------------------------------------------------------
consensus_9238#0 CCCTGGCACACCTC-AAGATT-CAGGAATATCATTGCAAACAGTTCAAGATCTTGGACC- 477
consensus_9238#1 -CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCC 59
******** **** ****** ***** **************** * ************
consensus_9238#0 TTCTACACCTTTGTTTGGGGTTTGC-ATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAG 536
consensus_9238#1 TTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAG 119
************************ **********************************
consensus_9238#0 GGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATG 596
consensus_9238#1 GGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATG 179
**************** *******************************************
consensus_9238#0 AGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGAT 656
consensus_9238#1 AGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGAT 239
************************************************************
consensus_9238#0 ACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTT 716
consensus_9238#1 ACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTT 299
************************************************************
consensus_9238#0 GGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTG 776
consensus_9238#1 GGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTG 359
************************************************************
consensus_9238#0 TGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCA 836
consensus_9238#1 TGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCA 419
************************************************************
consensus_9238#0 TCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGG 896
consensus_9238#1 TCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGG 479
************************************************************
consensus_9238#0 TTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCC 956
consensus_9238#1 TTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCC 539
************************************************************
consensus_9238#0 TAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTC 1016
consensus_9238#1 TAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTC 599
************************************************************
consensus_9238#0 TTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTA 1076
consensus_9238#1 TTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTN 659
***********************************************************
consensus_9238#0 TCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA 1131
consensus_9238#1 TCTCAAAAAAAAA---------AAAAAAAAA------------------------ 681
***** * * ** ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||