cluster # 924

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Oryza sativa
cluster # 924 cluster # 924 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_924#0 length = 1696 sequences # 1

consensus_924#1 length = 524 sequences # 1

consensusID : consensus_924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1696
fasta sequence

                              [ATTAATTACGTGTAATCAAACCGGTCTGAGGACGGCGGCTGCGGCGGCGGCGGCGGCGGAGCGGGAGACCTCACCTCTGCGCCCCTCGTCGCACCACCACCACCGAGTCATCCCGCGTCCGCGGCGTCGGCGAGGCGCATCGAGGCGGAGGTCGCCGGCGCGAGGCAGGCTCCTCTGCCCCTCCAACCCCCAACCCAAACCCTGCACGACCTGCCGCGCCGCCGCCAAACCCGAGGGCCATCCGGAGGAGGAGCAATTCGGTGTGGCTCTGGTGGATTTCATCGATTTCTCGACGCTACCACTGGATTTAGGTTTATGAAGCTCTAGGAGTATAGGTTTTCATTGCTTGTTTGCCAGTTTGTTAGAGCAAGGATGGGAATGGACTACTACAATATCCTCAAGGTGAACCGCAATGCGACATTAGAGGACCTCAAGAAGTCATACCGGCGGCTCGCGAGGACGTGGCACCCCGACAAGAATCCAACTGGCGGCGCGGAGGCTGAGGCCAAGTTCAAGCAGATAACTGAGGCCTATGAGGTACTAAGTGATCCAGAAAAACGTGCAATCTATGACCGATATGGTGAAGAAGGCTTAAAGGGAATGCCTCCACCTGGTTCACAGAGCCGGACTTCCGCAGCTGCTGGCTCAAGTGGTCCTAGTAATTTCCGGTACAATCCGAGCGACCCTGATGATTTCTTTGCTGAGTTCATGGCAAGCAACAAACCTTACTCCTTCGACCAAGAACGAACGCGGTTCCAACCACGATCACAGTGGACAGCAGGGAACACTAGAGGTGAAGCATCTTCTGCTTCACATAAGGAAAGCAGTACCAGTACAAGTCAACTAGAAAAACCAGCAGCTATTGAGAAAACCTTACTGTGCACTCTTGAGGAATTGTATAATGGAACAAAAAGGAAGATGAAGATCACTAGGAATGTTGCAAATACTGATGGAAAGGTAGAAATCGAGACAGAGGTCTTACCTGTTGAAGTGTTGCCCGGCTGGAAAAAGGGAACAAAGATAACATTTCCCAACAAAGGCGATAGGCTATCTGGTCAGTTGCCACAAGACCTCACCTTCGTCATCGATCTGAAGCCCCACGATGTGTACCTCCTGGAAGGGAACAATCTTGTAGCAACCCAGGTGATCCCTCTCGTGGATGCTCTTGCTGGGACAACCATACATCTGAAGACCCTTGACGGCAGGAATCTTCCCATCAGGGTGGAGGAAGTCGTGCGTCCTGGGCATGAGATTGTGCTCGCGAACGAAGGGTGGCCGATCAGGAAGGAACCGGGGAAGAAGGGGAACCTGAAGATCAAGTTTGATGTGACCTTCCCGACGAGGCTGTCATCTTCACAGCGTGCAGCCATCAGGCAGATCATGGGTGGTTAGCTAGAGAAGATAAGATACACCAACAGATTCGTCATACAGAAACAAGAAACTATAGTTGTGCTAGTCTGATAGATGGAGCTGGATTCAGGATTCAGATAGGTTCTTCTGTTGTTACAGGCATATAGTGGTGCGGTTTTTATTCTACCTTGTTCTTGCTCTGTAAGTGACAGAGAAGTTTTCGTTCTGTTGATCATTGGAAAAGATTCTAATGGTGATCGTGCTATAGGCTGATTCTGACATAGTGACATGTAGTAGTTCTGAATGCCTTGTTTTGGATTGGATAAATAGAGCATGTGCTCAGTCA]

[+] EMBL AK064322             [ATTAATTACGTGTAATCAAACCGGTCTGAGGACGGCGGCTGCGGCGGCGGCGGCGGCGGAGCGGGAGACCTCACCTCTGCGCCCCTCGTCGCACCACCACCACCGAGTCATCCCGCGTCCGCGGCGTCGGCGAGGCGCATCGAGGCGGAGGTCGCCGGCGCGAGGCAGGCTCCTCTGCCCCTCCAACCCCCAACCCAAACCCTGCACGACCTGCCGCGCCGCCGCCAAACCCGAGGGCCATCCGGAGGAGGAGCAATTCGGTGTGGCTCTGGTGGATTTCATCGATTTCTCGACGCTACCACTGGATTTAGGTTTATGAAGCTCTAGGAGTATAGGTTTTCATTGCTTGTTTGCCAGTTTGTTAGAGCAAGGATGGGAATGGACTACTACAATATCCTCAAGGTGAACCGCAATGCGACATTAGAGGACCTCAAGAAGTCATACCGGCGGCTCGCGAGGACGTGGCACCCCGACAAGAATCCAACTGGCGGCGCGGAGGCTGAGGCCAAGTTCAAGCAGATAACTGAGGCCTATGAGGTACTAAGTGATCCAGAAAAACGTGCAATCTATGACCGATATGGTGAAGAAGGCTTAAAGGGAATGCCTCCACCTGGTTCACAGAGCCGGACTTCCGCAGCTGCTGGCTCAAGTGGTCCTAGTAATTTCCGGTACAATCCGAGCGACCCTGATGATTTCTTTGCTGAGTTCATGGCAAGCAACAAACCTTACTCCTTCGACCAAGAACGAACGCGGTTCCAACCACGATCACAGTGGACAGCAGGGAACACTAGAGGTGAAGCATCTTCTGCTTCACATAAGGAAAGCAGTACCAGTACAAGTCAACTAGAAAAACCAGCAGCTATTGAGAAAACCTTACTGTGCACTCTTGAGGAATTGTATAATGGAACAAAAAGGAAGATGAAGATCACTAGGAATGTTGCAAATACTGATGGAAAGGTAGAAATCGAGACAGAGGTCTTACCTGTTGAAGTGTTGCCCGGCTGGAAAAAGGGAACAAAGATAACATTTCCCAACAAAGGCGATAGGCTATCTGGTCAGTTGCCACAAGACCTCACCTTCGTCATCGATCTGAAGCCCCACGATGTGTACCTCCTGGAAGGGAACAATCTTGTAGCAACCCAGGTGATCCCTCTCGTGGATGCTCTTGCTGGGACAACCATACATCTGAAGACCCTTGACGGCAGGAATCTTCCCATCAGGGTGGAGGAAGTCGTGCGTCCTGGGCATGAGATTGTGCTCGCGAACGAAGGGTGGCCGATCAGGAAGGAACCGGGGAAGAAGGGGAACCTGAAGATCAAGTTTGATGTGACCTTCCCGACGAGGCTGTCATCTTCACAGCGTGCAGCCATCAGGCAGATCATGGGTGGTTAGCTAGAGAAGATAAGATACACCAACAGATTCGTCATACAGAAACAAGAAACTATAGTTGTGCTAGTCTGATAGATGGAGCTGGATTCAGGATTCAGATAGGTTCTTCTGTTGTTACAGGCATATAGTGGTGCGGTTTTTATTCTACCTTGTTCTTGCTCTGTAAGTGACAGAGAAGTTTTCGTTCTGTTGATCATTGGAAAAGATTCTAATGGTGATCGTGCTATAGGCTGATTCTGACATAGTGACATGTAGTAGTTCTGAATGCCTTGTTTTGGATTGGATAAATAGAGCATGTGCTCAGTCA]




>consensus_924#0
ATTAATTACGTGTAATCAAACCGGTCTGAGGACGGCGGCTGCGGCGGCGGCGGCGGCGGA
GCGGGAGACCTCACCTCTGCGCCCCTCGTCGCACCACCACCACCGAGTCATCCCGCGTCC
GCGGCGTCGGCGAGGCGCATCGAGGCGGAGGTCGCCGGCGCGAGGCAGGCTCCTCTGCCC
CTCCAACCCCCAACCCAAACCCTGCACGACCTGCCGCGCCGCCGCCAAACCCGAGGGCCA
TCCGGAGGAGGAGCAATTCGGTGTGGCTCTGGTGGATTTCATCGATTTCTCGACGCTACC
ACTGGATTTAGGTTTATGAAGCTCTAGGAGTATAGGTTTTCATTGCTTGTTTGCCAGTTT
GTTAGAGCAAGGATGGGAATGGACTACTACAATATCCTCAAGGTGAACCGCAATGCGACA
TTAGAGGACCTCAAGAAGTCATACCGGCGGCTCGCGAGGACGTGGCACCCCGACAAGAAT
CCAACTGGCGGCGCGGAGGCTGAGGCCAAGTTCAAGCAGATAACTGAGGCCTATGAGGTA
CTAAGTGATCCAGAAAAACGTGCAATCTATGACCGATATGGTGAAGAAGGCTTAAAGGGA
ATGCCTCCACCTGGTTCACAGAGCCGGACTTCCGCAGCTGCTGGCTCAAGTGGTCCTAGT
AATTTCCGGTACAATCCGAGCGACCCTGATGATTTCTTTGCTGAGTTCATGGCAAGCAAC
AAACCTTACTCCTTCGACCAAGAACGAACGCGGTTCCAACCACGATCACAGTGGACAGCA
GGGAACACTAGAGGTGAAGCATCTTCTGCTTCACATAAGGAAAGCAGTACCAGTACAAGT
CAACTAGAAAAACCAGCAGCTATTGAGAAAACCTTACTGTGCACTCTTGAGGAATTGTAT
AATGGAACAAAAAGGAAGATGAAGATCACTAGGAATGTTGCAAATACTGATGGAAAGGTA
GAAATCGAGACAGAGGTCTTACCTGTTGAAGTGTTGCCCGGCTGGAAAAAGGGAACAAAG
ATAACATTTCCCAACAAAGGCGATAGGCTATCTGGTCAGTTGCCACAAGACCTCACCTTC
GTCATCGATCTGAAGCCCCACGATGTGTACCTCCTGGAAGGGAACAATCTTGTAGCAACC
CAGGTGATCCCTCTCGTGGATGCTCTTGCTGGGACAACCATACATCTGAAGACCCTTGAC
GGCAGGAATCTTCCCATCAGGGTGGAGGAAGTCGTGCGTCCTGGGCATGAGATTGTGCTC
GCGAACGAAGGGTGGCCGATCAGGAAGGAACCGGGGAAGAAGGGGAACCTGAAGATCAAG
TTTGATGTGACCTTCCCGACGAGGCTGTCATCTTCACAGCGTGCAGCCATCAGGCAGATC
ATGGGTGGTTAGCTAGAGAAGATAAGATACACCAACAGATTCGTCATACAGAAACAAGAA
ACTATAGTTGTGCTAGTCTGATAGATGGAGCTGGATTCAGGATTCAGATAGGTTCTTCTG
TTGTTACAGGCATATAGTGGTGCGGTTTTTATTCTACCTTGTTCTTGCTCTGTAAGTGAC
AGAGAAGTTTTCGTTCTGTTGATCATTGGAAAAGATTCTAATGGTGATCGTGCTATAGGC
TGATTCTGACATAGTGACATGTAGTAGTTCTGAATGCCTTGTTTTGGATTGGATAAATAG
AGCATGTGCTCAGTCA

consensusID : consensus_924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [CTCAAACAAACCAAAAACCATCTGAAAACAAAAAAACCAATTAATTACGTGTAATCAAACCGGTCTGAGGACGGCGGCTGCGGCGGCGGCGGCGGCGGAGCGGGAGACCTCACCTCTGCGCCCCTCGTCGCACCACCACCACCGAGTCATCCCGCGTCCGCGGCGTCGGCGAGGCGCATCGAGGCGGAGGTCGCCGGCGCGAGGCAGGCTCCTCTCCCCCTCCAACCCCCAACCCAAACCCTGCACGACCTGCCGCGCCGCCGCCAAACCCGAGGGCCATCCGGAGGAGGAGCAATTCGGTGTGGCTCTGGTGGATATCATCGATTTCTCGACGCTACCGCATAAATCCGGCTCGGCATTGATTCTGGGTTTGGAGCATCTCGAATTTGTTGGGCCTCCACTGGATTTAGGTGTATGAAGCTCTAGGAGTATAGGGTTTTCATTGCTTGTTTGGCCAGTTTGGTTAGAGCAGGGATGGGAATGGACTACTACCATATCCTCAAGGTGAACCGCAATGCGACATT]

[+] EMBL CA758579             [CTCAAACAAACCAAAAACCATCTGAAAACAAAAAAACCAATTAATTACGTGTAATCAAACCGGTCTGAGGACGGCGGCTGCGGCGGCGGCGGCGGCGGAGCGGGAGACCTCACCTCTGCGCCCCTCGTCGCACCACCACCACCGAGTCATCCCGCGTCCGCGGCGTCGGCGAGGCGCATCGAGGCGGAGGTCGCCGGCGCGAGGCAGGCTCCTCTCCCCCTCCAACCCCCAACCCAAACCCTGCACGACCTGCCGCGCCGCCGCCAAACCCGAGGGCCATCCGGAGGAGGAGCAATTCGGTGTGGCTCTGGTGGATATCATCGATTTCTCGACGCTACCGCATAAATCCGGCTCGGCATTGATTCTGGGTTTGGAGCATCTCGAATTTGTTGGGCCTCCACTGGATTTAGGTGTATGAAGCTCTAGGAGTATAGGGTTTTCATTGCTTGTTTGGCCAGTTTGGTTAGAGCAGGGATGGGAATGGACTACTACCATATCCTCAAGGTGAACCGCAATGCGACATT]




>consensus_924#1
CTCAAACAAACCAAAAACCATCTGAAAACAAAAAAACCAATTAATTACGTGTAATCAAAC
CGGTCTGAGGACGGCGGCTGCGGCGGCGGCGGCGGCGGAGCGGGAGACCTCACCTCTGCG
CCCCTCGTCGCACCACCACCACCGAGTCATCCCGCGTCCGCGGCGTCGGCGAGGCGCATC
GAGGCGGAGGTCGCCGGCGCGAGGCAGGCTCCTCTCCCCCTCCAACCCCCAACCCAAACC
CTGCACGACCTGCCGCGCCGCCGCCAAACCCGAGGGCCATCCGGAGGAGGAGCAATTCGG
TGTGGCTCTGGTGGATATCATCGATTTCTCGACGCTACCGCATAAATCCGGCTCGGCATT
GATTCTGGGTTTGGAGCATCTCGAATTTGTTGGGCCTCCACTGGATTTAGGTGTATGAAG
CTCTAGGAGTATAGGGTTTTCATTGCTTGTTTGGCCAGTTTGGTTAGAGCAGGGATGGGA
ATGGACTACTACCATATCCTCAAGGTGAACCGCAATGCGACATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_924#0      ---------------------------------------ATTAATTACGTGTAATCAAAC 21
consensus_924#1      CTCAAACAAACCAAAAACCATCTGAAAACAAAAAAACCAATTAATTACGTGTAATCAAAC 60
                                                            *********************

consensus_924#0      CGGTCTGAGGACGGCGGCTGCGGCGGCGGCGGCGGCGGAGCGGGAGACCTCACCTCTGCG 81
consensus_924#1      CGGTCTGAGGACGGCGGCTGCGGCGGCGGCGGCGGCGGAGCGGGAGACCTCACCTCTGCG 120
                     ************************************************************

consensus_924#0      CCCCTCGTCGCACCACCACCACCGAGTCATCCCGCGTCCGCGGCGTCGGCGAGGCGCATC 141
consensus_924#1      CCCCTCGTCGCACCACCACCACCGAGTCATCCCGCGTCCGCGGCGTCGGCGAGGCGCATC 180
                     ************************************************************

consensus_924#0      GAGGCGGAGGTCGCCGGCGCGAGGCAGGCTCCTCTGCCCCTCCAACCCCCAACCCAAACC 201
consensus_924#1      GAGGCGGAGGTCGCCGGCGCGAGGCAGGCTCCTCTCCCCCTCCAACCCCCAACCCAAACC 240
                     *********************************** ************************

consensus_924#0      CTGCACGACCTGCCGCGCCGCCGCCAAACCCGAGGGCCATCCGGAGGAGGAGCAATTCGG 261
consensus_924#1      CTGCACGACCTGCCGCGCCGCCGCCAAACCCGAGGGCCATCCGGAGGAGGAGCAATTCGG 300
                     ************************************************************

consensus_924#0      TGTGGCTCTGGTGGATTTCATCGATTTCTCGACGCTACC--------------------- 300
consensus_924#1      TGTGGCTCTGGTGGATATCATCGATTTCTCGACGCTACCGCATAAATCCGGCTCGGCATT 360
                     **************** **********************                     

consensus_924#0      ---------------------------------------ACTGGATTTAGGTTTATGAAG 321
consensus_924#1      GATTCTGGGTTTGGAGCATCTCGAATTTGTTGGGCCTCCACTGGATTTAGGTGTATGAAG 420
                                                            ************* *******

consensus_924#0      CTCTAGGAGTATAGG-TTTTCATTGCTTGTTTG-CCAGTTTG-TTAGAGCAAGGATGGGA 378
consensus_924#1      CTCTAGGAGTATAGGGTTTTCATTGCTTGTTTGGCCAGTTTGGTTAGAGCAGGGATGGGA 480
                     *************** ***************** ******** ******** ********

consensus_924#0      ATGGACTACTACAATATCCTCAAGGTGAACCGCAATGCGACATTAGAGGACCTCAAGAAG 438
consensus_924#1      ATGGACTACTACCATATCCTCAAGGTGAACCGCAATGCGACATT---------------- 524
                     ************ *******************************                

consensus_924#0      TCATACCGGCGGCTCGCGAGGACGTGGCACCCCGACAAGAATCCAACTGGCGGCGCGGAG 498
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      GCTGAGGCCAAGTTCAAGCAGATAACTGAGGCCTATGAGGTACTAAGTGATCCAGAAAAA 558
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      CGTGCAATCTATGACCGATATGGTGAAGAAGGCTTAAAGGGAATGCCTCCACCTGGTTCA 618
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      CAGAGCCGGACTTCCGCAGCTGCTGGCTCAAGTGGTCCTAGTAATTTCCGGTACAATCCG 678
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      AGCGACCCTGATGATTTCTTTGCTGAGTTCATGGCAAGCAACAAACCTTACTCCTTCGAC 738
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      CAAGAACGAACGCGGTTCCAACCACGATCACAGTGGACAGCAGGGAACACTAGAGGTGAA 798
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      GCATCTTCTGCTTCACATAAGGAAAGCAGTACCAGTACAAGTCAACTAGAAAAACCAGCA 858
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      GCTATTGAGAAAACCTTACTGTGCACTCTTGAGGAATTGTATAATGGAACAAAAAGGAAG 918
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      ATGAAGATCACTAGGAATGTTGCAAATACTGATGGAAAGGTAGAAATCGAGACAGAGGTC 978
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      TTACCTGTTGAAGTGTTGCCCGGCTGGAAAAAGGGAACAAAGATAACATTTCCCAACAAA 1038
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      GGCGATAGGCTATCTGGTCAGTTGCCACAAGACCTCACCTTCGTCATCGATCTGAAGCCC 1098
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      CACGATGTGTACCTCCTGGAAGGGAACAATCTTGTAGCAACCCAGGTGATCCCTCTCGTG 1158
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      GATGCTCTTGCTGGGACAACCATACATCTGAAGACCCTTGACGGCAGGAATCTTCCCATC 1218
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      AGGGTGGAGGAAGTCGTGCGTCCTGGGCATGAGATTGTGCTCGCGAACGAAGGGTGGCCG 1278
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      ATCAGGAAGGAACCGGGGAAGAAGGGGAACCTGAAGATCAAGTTTGATGTGACCTTCCCG 1338
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      ACGAGGCTGTCATCTTCACAGCGTGCAGCCATCAGGCAGATCATGGGTGGTTAGCTAGAG 1398
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      AAGATAAGATACACCAACAGATTCGTCATACAGAAACAAGAAACTATAGTTGTGCTAGTC 1458
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      TGATAGATGGAGCTGGATTCAGGATTCAGATAGGTTCTTCTGTTGTTACAGGCATATAGT 1518
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      GGTGCGGTTTTTATTCTACCTTGTTCTTGCTCTGTAAGTGACAGAGAAGTTTTCGTTCTG 1578
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      TTGATCATTGGAAAAGATTCTAATGGTGATCGTGCTATAGGCTGATTCTGACATAGTGAC 1638
consensus_924#1      ------------------------------------------------------------
                                                                                 

consensus_924#0      ATGTAGTAGTTCTGAATGCCTTGTTTTGGATTGGATAAATAGAGCATGTGCTCAGTCA 1696
consensus_924#1      ----------------------------------------------------------