These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1290 fasta sequence [TAAAAGACATGGCATCTCAACAATACTCCTGATTTTCTACTACTGATTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGATAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGT-CGTCGCCGACGT-GGTCTCCGCCGCCGTCAAGGAAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGAT-GGGGTTGTCAAGCGGGAAGACCTC-TTCATCACCTNCAAGATA-TGGTGCTGACTGCTGCTGTCTTGTTCCTTCTATTGACCGACCTCAACTTCTGAACGCTACTAGTAGTGCAAGTTTATTCTGCTATTTCGAATTATGTTCTATCCCTTCCTCTTGAAGACGTCCCAAACTCTGCAGGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGCTCGCGCGATCGGCGTGAGCAATTTCTCCTCCAAGAAGCTTGGCGATCTGCTCTGCGTCGCCCGCGTCCCTCCGGCCGTTGATCAGGTCGAGTGCCACCCGGGCTGGCAGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTTCCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACCTATGTGAAACAAAATGTGCCATTACTGTAAAAGAACGATGAAAAATAACAGGCATTTCACAACAAAAAAAAA] [+] EMBL AU100962 [TAAAAGACATGGCATCTCAACAATACTCCTGATTTTCTACTACTGATTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGATAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGT CGTCGCCGACGT GGTCTCCGCCGCCGTCAAGGAAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGAT GGGGTTGTCAAGCGGGAAGACCTC TTCATCAACTNCAAGATA TNGT ] [+] EMBL AK100718 [ TTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGATAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGT CGTCGCCGACGT GGTCTCCGCCGCCGTCAAGGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGAT GGGGTTGTCAAGCGGGAAGACCTC TTCATCACCTCCAAGATA TGGTGCTGACTGCTGCTGTCTTGTTCCTTCTATTGACCGACCTCAACTTCTGAACGCTACTAGTAGTGCAAGTTTATTCTGCTATTTCGAATTATGTTCTATCCCTTCCTCTTGAAGACGTCCCAAACTCTGCAGGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGCTCGCGCGATCGGCGTGAGCAATTTCTCCTCCAAGAAGCTTGGCGATCTGCTCTGCGTCGCCCGCGTCCCTCCGGCCGTTGATCAGGTCGAGTGCCACCCGGGCTGGCAGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTTCCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACCTATGTGAAACAAAATGTGCCATTACTGTAAAAGAACGATGAAAAATAACA ] [+] EMBL C28822 [ GCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCNG GACAGAGCAGAG ATCAGGCGCGTGTGGATAGCCGGA GACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACC CGTNCGTCG CAACGTNGGTCTCCGCCGCCGTCAAGGAGGTGTACCGGCACATAGACTGCGCGCCG TGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTNAAGAAGCTCTTCGATGATGGGGGTTGTCAAGCGGGAAGACCTCTTTCATCACCTNCAAGATATTGGTtcag ] [+] EMBL AU100963 [ ATTATGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAA TTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGTTCGCGCGATCGGCGTGAGCAATTTCTCCTCCAAGAAGCTTGGCGATCTGCTCTGCGTCGCCCGCGTCCCTCCGGCCGTTGATCAGGTCGAGTGCCACCCGGGCTGGCAGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTTCCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACCTATGTGAAACAAAATGTGCCATTACTGTAAAAGAACGATGAAAAATAACAGGCATTTCACAACAAAAAAAAA] [-] EMBL CF317955 [ CGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCTAGATGTTAGAAAGAACTCCGGCTCAGGTTGCTGTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTTCCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTTTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTTTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATTTAAAAGAATGGAAA ] consensusID : consensus_9240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CATGGACTGAATGACTGCATGACAGAGTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGGTAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGCTCGCGCGAT] [+] EMBL CF337413 [CATGGACTGAATGACTGCATGACAGAGTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGGTAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGCTCGCGCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9240#0 TAAAAGACATGGCATCTCAACAATACTCCTGATT-TTCTACTACTGATTTTCCCTTCGTC 59 consensus_9240#1 ---------------------CATGGACTGAATGACTGCATGACAGAGTTTCCCTTCGTC 39 ** * ** * * ** ** ************ consensus_9240#0 AAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGA 119 consensus_9240#1 AAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGA 99 ************************************************************ consensus_9240#0 GCAGAGCATCAGGCGCGTGTGGATAGCCGGAGGACATGGCCACCCACTTCACGCTCAACA 179 consensus_9240#1 GCAGAGCATCAGGCGCGTGTGGGTAGCCGGAGGACATGGCCACCCACTTCACGCTCAACA 159 ********************** ************************************* consensus_9240#0 CCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCG 239 consensus_9240#1 CCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCG 219 ************************************************************ consensus_9240#0 CCGACGTGGTCTCCGCCGCCGTCAAGGAAGGGTACCGGCACATAGACTGCGCGCCGCTGT 299 consensus_9240#1 CCGACGTGGTCTCCGCCGCCGTCAAGGCAGGGTACCGGCACATAGACTGCGCGCCGCTGT 279 *************************** ******************************** consensus_9240#0 ACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGATGGGGTTGTCA 359 consensus_9240#1 ACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGATGGGGTTGTCA 339 ************************************************************ consensus_9240#0 AGCGGGAAGACCTCTTCATCACCTNCAAGATATGGTGCTGACTGCTGCTGTCTTGTTCCT 419 consensus_9240#1 AGCGGGAAGACCTCTTCATCACCTCCAAGATATGGTGC---------------------- 377 ************************ ************* consensus_9240#0 TCTATTGACCGACCTCAACTTCTGAACGCTACTAGTAGTGCAAGTTTATTCTGCTATTTC 479 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 GAATTATGTTCTATCCCTTCCTCTTGAAGACGTCCCAAACTCTGCAGGTGCAGCGACCTC 539 consensus_9240#1 ---------------------------------------------------AGCGACCTC 386 ********* consensus_9240#0 GCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTAC 599 consensus_9240#1 GCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTAC 446 ************************************************************ consensus_9240#0 GTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCA 659 consensus_9240#1 GTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCA 506 ************************************************************ consensus_9240#0 GAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGAT 719 consensus_9240#1 GAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGAT 566 ************************************************************ consensus_9240#0 TCAGGCAAAGCTCGCGCGATCGGCGTGAGCAATTTCTCCTCCAAGAAGCTTGGCGATCTG 779 consensus_9240#1 TCAGGCAAAGCTCGCGCGAT---------------------------------------- 586 ******************** consensus_9240#0 CTCTGCGTCGCCCGCGTCCCTCCGGCCGTTGATCAGGTCGAGTGCCACCCGGGCTGGCAG 839 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCA 899 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 TTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTA 959 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 GGAAGAACTCCGGCTCAGGTTGCTCTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTT 1019 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATT 1079 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGAT 1139 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 GGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATC 1199 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 TAAAAGAATGGAAATCACCTATGTGAAACAAAATGTGCCATTACTGTAAAAGAACGATGA 1259 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 AAAATAACAGGCATTTCACAACAAAAAAAAA 1290 consensus_9240#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||