cluster # 9241

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Oryza sativa
cluster # 9241 cluster # 9241 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9241#0 length = 682 sequences # 5

consensus_9241#1 length = 404 sequences # 1

consensusID : consensus_9241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 682
fasta sequence

                              [GCTTCTTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCC-TTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATTGTCTTATTCCATTGCTCCNAATGTTCTGAGACATTTGTGCTCATCCATGCTGCTTCAGCATTAATGCTT]

[+] EMBL CF337653             [GCTTCTTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAG                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK073116             [     TTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCC TTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGC                                                                                       ]
[+] EMBL AK104077             [                                CGACTTTTCTTGCTGTGGGGAGAAGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCC TTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATT                                                                     ]
[+] EMBL AU162343             [                                                       AGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTNAGGAAGCAGCTGCCCTGATACTCCTTTTTTTTGAGTATTGCCAAAATGACCAATTCGNGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTNATGCCA                                                                                     ]
[+] EMBL CA755194             [                                                                     GCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCC TTTTTTTGAGTATTGCCNAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATTGTCTTATTCCATTGCTCCNAATGTTCTGAGACATTTGTGCTCATCCATGCTGCTTCAGCATTAATGCTT]




>consensus_9241#0
GCTTCTTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAAT
CGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGT
TCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATC
AGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGG
AGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTG
GAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTA
TCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAA
TGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAG
GAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAA
CTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGC
AACTCAACTAATTGTCTTATTCCATTGCTCCNAATGTTCTGAGACATTTGTGCTCATCCA
TGCTGCTTCAGCATTAATGCTT

consensusID : consensus_9241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [AAAATTACCGCTTTAGATCAGATGTGCTTTCCCCCCTTTTTTATACGGCTGTTGGAGGGCCAGTTTCACTCTTTCTTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGTTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAACCCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGCCCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATTGTTTTATTCCATTGCTCCAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF337652             [AAAATTACCGCTTTAGATCAGATGTGCTTTCCCCCCTTTTTTATACGGCTGTTGGAGGGCCAGTTTCACTCTTTCTTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGTTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAACCCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGCCCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATTGTTTTATTCCATTGCTCCAAAAAAAAAAAAAAAAAAA]




>consensus_9241#1
AAAATTACCGCTTTAGATCAGATGTGCTTTCCCCCCTTTTTTATACGGCTGTTGGAGGGC
CAGTTTCACTCTTTCTTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGTTATCATGC
AAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAACCCTTTTAAATGGGGT
CACTAGAGCCATGTCGATATGGCCCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCA
GCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAAC
ATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCA
ACTAATTGTTTTATTCCATTGCTCCAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9241#0      GCTTCTTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAAT 60
consensus_9241#1      ------------------------------------------------------------
                                                                                  

consensus_9241#0      CGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGT 120
consensus_9241#1      ------------------------------------------------------------
                                                                                  

consensus_9241#0      TCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATC 180
consensus_9241#1      ------------------------------------------------------------
                                                                                  

consensus_9241#0      AGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGG 240
consensus_9241#1      ------------------------------------------------------------
                                                                                  

consensus_9241#0      AGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTG 300
consensus_9241#1      ------AAAATTACCGCTTTAGATCAGATGTGCTTTCCCCCCTTTTTTATACGGCTGTTG 54
                            *************************** ****** * ** **************

consensus_9241#0      GAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTA 360
consensus_9241#1      GAGGGCCAGTTTCACTCTTTCTTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGTTA 114
                      ********* ******* *** *********************************** **

consensus_9241#0      TCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAA 420
consensus_9241#1      TCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAACCCTTTTAAA 174
                      ************************************************** *********

consensus_9241#0      TGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAG 480
consensus_9241#1      TGGGGTCACTAGAGCCATGTCGATATGGCCCTTTTCGTTGTACTCCCTTTTTGGTGTCAG 234
                      **************************** *******************************

consensus_9241#0      GAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAA 540
consensus_9241#1      GAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAA 294
                      ************************************************************

consensus_9241#0      CTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGC 600
consensus_9241#1      CTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGC 354
                      ************************************************************

consensus_9241#0      AACTCAACTAATTGTCTTATTCCATTGCTCCNAATGTTCTGAGACATTTGTGCTCATCCA 660
consensus_9241#1      AACTCAACTAATTGTTTTATTCCATTGCTCCAAAAAAAAAAAAAAAAAAA---------- 404
                      *************** *************** **       * * *              

consensus_9241#0      TGCTGCTTCAGCATTAATGCTT 682
consensus_9241#1      ----------------------