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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1524 fasta sequence
[GCGTTAAAGATATGGTATAAGAAATAGGCTATTAAGTAACCCTTTATGAATTGTGGATACATCTGTATCCTTAACATACTGAAACAACTGCCATTATTCGTATCAAACCAATACCGATTCATACAAGTTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAACCAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAAACCTTTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTGATACCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATATCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCCATGGAGAATGTGGTCAGAAACCCATAATAGAGTCCGAACGCAACGACCGAATTAATTATCCTCATCGAGAAACTTAGACTACTAAGTAGAAAAGATTTGAAAATCATGGCATGGGTCTCCTTTTTTTCTTTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGGGATAGACTATAAATGACATCTCTTATGTCAATAAGACCAAAGGGATGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTCTGGGCTTACCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCCGGGAGTTACGAAAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAGCGGGAGTTGAACTCTAGGAGGTCGAATCCCCCTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCCCTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCAATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAA]
[+] EMBL CB661986 [GCGTTAAAGATATGGTATAAGAAATAGGCTATTAAGTAACCCTTTATGAATTGTGGATACATCTGTATCCTTAACATACTGAAACAACTGCCATTATTCGTATCAAACCAATACCGATTCATACAAGTTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAACCAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAAACCTTTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTGATACCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATATCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCCATGGAGAATGTGGTCAGAAACCCATAATAGAGTCCGAACGCAACGACCGAATTAATT ]
[-] EMBL CB661985 [ TTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAACCAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAAACCTTTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTGATACCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATATCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCCATGGAGAATGTGGTCAGAAACCCATAATAGAGTCCGACCGCAACGACCGAATTAATTATCCTCATCGAGAAACTTAGACTACTAAGTAGAAAAGATTTGAAAATCATGGCATGGGTCTCCTTTTTTTCTTTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGGGATAGA ]
[-] EMBL CA763822 [ AGAAAACCAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTCCTTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAGACCTTTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTGATGCCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATATCTCCTTCTTC ]
[-] EMBL CK085106 [ GATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGAGATAGACTATAAATGACATCTCTTATGTCAATAAGACCAAAGGGATGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTCTGGGCTTACCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCCGGGAGTTACGAAAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAGCGGGAGTTGAACTCTAGGAGGTCGAATCCCCCTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCCCTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCAATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAA]
consensusID : consensus_9254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[ACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAATGATAAAAAGCTTAACACCTCTTATTTGACTTTTTCACTATTTTGAAATACGAAAAAGATCCAAATCCAAAATGCAAAGGTCGTCTTATTCAAAACCTCAATCATCACATCCCCTCTCTCCCACTTCACACCTCGGAACGCACTGTTCTTATAGAGAGAAAGGGGCTTTCCCATCTTCTTAACCCGAAATGAAATGGCTGAGGAGAGGGAGGTTCCTTTTGGGGGGTACCCCCGGGAAGAGATCCAGTGGAGACGGGGTGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCCCTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCG]
[+] EMBL CK085163 [ACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAATGATAAAAAGCTTAACACCTCTTATTTGACTTTTTCACTATTTTGAAATACGAAAAAGATCCAAATCCAAAATGCAAAGGTCGTCTTATTCAAAACCTCAATCATCACATCCCCTCTCTCCCACTTCACACCTCGGAACGCACTGTTCTTATAGAGAGAAAGGGGCTTTCCCATCTTCTTAACCCGAAATGAAATGGCTGAGGAGAGGGAGGTTCCTTTTGGGGGGTACCCCCGGGAAGAGATCCAGTGGAGACGGGGTGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCCCTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCG]
consensusID : consensus_9254#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[NNAAGGNGANNNGNNTNNNNNNNCCCNNNGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCAATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAAGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAAGGGGGATTCGACCTCCTAGAGTTCAACTCCCGCTCTCAACCCATGAACAATATGAGTCCGAAGCTTCTTTCGTAACTCCCGGAATTTCTTCGTAGTGGC]
[-] EMBL CF196281 [NNAAGGNGANNNGNNTNNNNNNNCCCNNNGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCAATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAAGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAAGGGGGATTCGACCTCCTAGAGTTCAACTCCCGCTCTCAACCCATGAACAATATGAGTCCGAAGCTTCTTTCGTAACTCCCGGAATTTCTTCGTAGTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9254#0 GCGTTAAAGATATGGTATAAGAAATAGGCTATTAAGTAACCCTTTATGAATTGTGGATAC 60
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 ATCTGTATCCTTAACATACTGAAACAACTGCCATTATTCGTATCAAACCAATACCGATTC 120
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 ATACAAGTTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATT 180
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 AAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAA 240
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 TGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAAT 300
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 TCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAACCAG 360
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 AAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTC 420
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 TTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAAACCT 480
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 TTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTG 540
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 ATACCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATAT 600
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 AACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGAT 660
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 AATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATA 720
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 TCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCCATGGAGAAT 780
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 GTGGTCAGAAACCCATAATAGAGTCCGAACGCAACGACCGAATTAATTATCCTCATCGAG 840
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 AAACTTAGACTACTAAGTAGAAAAGATTTGAAAATCATGGCATGGGTCTCCTTTTTTTCT 900
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ----------ACCAATCCATCCCGAATTTGGTGGTTAAACTCTA---CTGCGGTGACGAT 47
consensus_9254#0 TTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTT 960
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAATGATAAAA----AGCTTA 103
consensus_9254#0 CCATATATAGAAAGGGATAGACTATAAATGACATCTCTTATGTCAATAAGACCAAAGGGA 1020
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 ACACCTCTTATTTGACTTTTTCACTATTTTGAAATACGAAAAAGATCCAAATCCAAAATG 163
consensus_9254#0 TGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTCTGG 1080
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 CAAAGGTCGTCTTATTCAAAACCTCAATCATCACATCCCCTCTCTCCCACTTCACACCTC 223
consensus_9254#0 GCTTACCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCCGGGAGTTACGA 1140
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 GGAACGCACTGTTCTTATAGAGAGAAAGGGGCTTTCCCATCTTCTTAACCCGAAATGAAA 283
consensus_9254#0 AAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAGCGGGAGTTGAACTCTAGGAGGTC 1200
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 TGGCTGAGGAGAGGGAGGTTCCTTTTGGGGGGTACCCCCGGGAAGAGATCCAGTGGAGAC 343
consensus_9254#0 GAATCCCCCTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTC 1260
consensus_9254#2 ------------------------------------------------------------
consensus_9254#1 GGGGTGGGCCTGTAGCTCAG------AGGATTAGAGCACGTGGCTACGAACCACGGTGTC 397
consensus_9254#0 GTAGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCC 1320
consensus_9254#2 ---------------------------------NNAAGGNGANNNGNNTNNNNNNNCCCN 27
consensus_9254#1 GGGGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCC 457
**** ** * * ***
consensus_9254#0 CTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGC 1380
consensus_9254#2 NNGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGC 87
consensus_9254#1 CTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGC 517
**********************************************************
consensus_9254#0 TCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCA 1440
consensus_9254#2 TCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCA 147
consensus_9254#1 TCTTTCCTTTTGTCG--------------------------------------------- 532
***************
consensus_9254#0 ATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAAT 1500
consensus_9254#2 ATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAAT 207
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 TCAATTCTTTATTCTTACATTAAA------------------------------------ 1524
consensus_9254#2 TCAATTCTTTATTCTTACATTAAAGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCT 267
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 ------------------------------------------------------------
consensus_9254#2 ACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAAGGGGGAT 327
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 ------------------------------------------------------------
consensus_9254#2 TCGACCTCCTAGAGTTCAACTCCCGCTCTCAACCCATGAACAATATGAGTCCGAAGCTTC 387
consensus_9254#1 ------------------------------------------------------------
consensus_9254#0 --------------------------------
consensus_9254#2 TTTCGTAACTCCCGGAATTTCTTCGTAGTGGC 419
consensus_9254#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||