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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1024 fasta sequence
[GCGCCGCGGCGGCCGCTCCCGCCGCGAGAAGAAGGCGGCGGCCGCGGCCGCGGC-GGCGGGG-GCCGCGCCCGC-TGCGCCGACGCAGGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGATCTGGCCTCCCTGGCCTCGACCCCCTCGCCGGCGGCGGCGGCCATGTTCGGCGTCTGGGACTACGAGGCGCAGCTCCAGGAGCTGCAGCGGCAGCGCGA-GTG-GTACCTCATGCACACGGCG-GC-G-GC-GGATCC-GTACTTCCCGCTGGCGCCGGAGCGC-GA-GGACCCGCCCTTCTGGTCAGCGCAGCCGCTGCTGCGGCAGGG-GACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGCGATGATGCGGGAGCCGGGGTTCCAC-TGGTGCGTGCGCGACGCGG-TCACCGTCGGATTCCGCTCACTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTCGCCGTCGCCCTCGC-CGCCTCCCCTGCCGCCGACCCCCGGCC-GACTCCCGCCGTCGTTCGTCGGGATGATGCCCGTTTACTAGCC-GTCGATTCGATTAGAAG-AAAAAAGAAATGTAAAAAAAAAAGAGGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGG-ATTGGTG-A-CAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTGTAGTTTTTCTGAGAGAGCGGGAGAGAGAGAGAGAGATGCCTGCTGGATGATTGGCATTTGTTCCTGGTATATGAAAGGTGGTATATGCAGAACAACATTTTAGTAAAAAAAAAAGA]
[+] EMBL CB668448 [GCGCCGCGGCGGCCGCTCCCGCCGCGAGAAGAAGGCGGCGGCCGCGGCCGCGGC GGCGGGG GCCGCGCCCGC TGCGCCGACGCAAGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGATCTGGCCTCCCTGGCCTCGACCCCCTCGCCGGCGGCGGCGGCCATGTTCGGCGTCTGGGACTACGAGGCGCAGCTCCAGGAGCTGCAGCGGCAGCGCGA GTG GTACCTCATGCACACGGCG GC G GC GGATCC GGACTTCCCGCTGGCGCCGGAGCGC GA GGACCCGCCCTTCTGGTCAGCGCAGCCGCTGCTGCGGCAGGG GACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGCGATGATGCGGGAGCCGGGGTTCCAC TGGTGCGTGCGCGACGCGG TCACCGTCGGATTCCGCTCACTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTCACCGACGCCCTCAC CGCCTCCCCTGCCGCCGACCCCCGGAC GACTCCCGCCGTCGTTCGACGGGATGATGCCCGCTTACTACCC GTCGATTCCATTAGAAG AAAAAAGACATGTAGAAAAAAAAGAGGAGAAACAACTGGAATTGGGGAGGCTTGC ]
[+] EMBL C99728 [ GGCAGGCGGGGAGCCGCGCCCGCGTGCGCCGACGCAGGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGANCTGGCNTCCCTGGCCTCGACCCCCTCGCCGGCGGC GCGGCCATGTTCGGCGTCTGGGACTACGAGGCGCA CTCCAGGAGCTGCAGCGGCAGCGCGA GTG GTACCTCATGCACACGGCG GC G GC GGATCC GTACTTCCCGCTGGCGCCGGAGCGC GA GGACCCGCCCTTCTGGTCAGCGCA CCGCTGCTGC GCAGGG GACGCCCTCGTCGTGCCCCGAGTGCGANGCGGCGGCGGCGATGATGCGGGANCCGGGGTTCCAC TGGTGCGTGCGCGACGCGGTTCACCGTCGGATTCCGCTCANTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTCGCCGTCGCCCTCGC CGCCTCCCCTGCCGCCGAC ]
[-] EMBL BI811595 [ CGCCCGC TGCGCCGACGCAGGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGATCTGGCCTCCCTGGCCTCGACCCCCTCGCCGGCGGCGGCGGCCATGTTCGGCGTCTGGGACTACGAGGCGCAGCTCCAGGAGCTGCAGCGGCAGCGCGATGTGTGTACCTCATGCACACGGCGTGCTGTGCTGGATCCTGTACTTCCCGCTGGCGCCGGAGCGCTGATGGACCCGCCCTTCTGGTCAGCGCAGCCGCTGCTGCGGCAGGGTGACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGCGATGATGCGGGAGCCGGGGTTCCACATGGTGCGTGCGCGACGCGG TCACCGTCGGATTCCGCTCACTGGTGGGGCCAATCGAGCGCCCGG GAAGAAATCCCCCTCGCCGTCG CCTCGCACGCCTCCCCTGCCG CGACCCCCGGCCAGACTCCCGCCGTCGTACGTCGGGATGATGCCCGTATACTAGCCAGTCGATTCGATAAGAAGAAAAAAAGAAATGT ACAAAAAAAGAGGAG AAAAACTGGAA TGGGGAGGCTTGCGTGTGG ATTGGTG A CAGCG ]
[-] EMBL CB668449 [ CTGCTGCGGCAGGG GACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGCGATGATGCGGGAGCCGGGGTTCCAC TGGTGCGTGCGCGACGCGG TCACCGTCGGATTCCGCTCACTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTTGCCGTCGCCCTTGC CGCCTCCCCTGCCGCCGACCCCCGGCC GACTCCCGCCGTCGTTTGTCGGGATGATGCCCGTTTACTAGCC GTCGATTCGATTAGAAG AAAAAAGAAATGTAAAAAAAAAAGAGGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTGTAGTTTTTCTGAGAGAGCGGGAGAGAGAGAGAGAGATGCCTGCTGGATGATTGGCATTTGTTCCTGGTATATGAAAGGTGGTATATGCAGAACAACATTTTAGTAAAAAAAAAAGA]
[+] EMBL BI806637 [ TTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACC ACATCTCTGGAACCCTCTGTTTTTTCTTTTTTA TTTTTCTGAGAGACCGGGAGAGAGAGAGAGAGAT CCT CTGGATGATT GCATTTGTTCCTGGTATATCAAA GTGGTATAT CAGAAC ACATTTTAGTAAAAA ]
consensusID : consensus_9262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence
[CGTGCCGACTCGTGCCGAATCGGCACGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTTTAGTTTTTCTCGTGANNAAACGAANNAGAGAGAGAGATGCCTGCTGGATGATTGGCATTTGTCCTGGTATATCAAAGTGGTATATGAGAACAACATTTTTTACCTAAGAACCAAATGAAAACTCGAGGGGGCCCGGTCCCATTTTCCTATATGGAGTGGTTACGCTCCTTACTGCCGTGTTTACCACTGGGCTTGGAACCCCTCGTTCCCACTTATTCCTTTGGAAAATTCCCTTTTCAGATTGGGTATTCAAAAGCCCCCGTTGGCTTTCCAAATGTGCAACCGTGTGAATTAATCCCTCTTAGGGCTTTAGCGGTGGGTGTTTCTCATTGTCTTATTTCTTATTATCCGGCTTTTTTTTTTTTTTTCTTTGGGTTCCCTGTTATATGGTTTAGTGAGTGTTGTTTCTTCCCTCTCTGGTGTTGTTGCGATGTGTAGGTCTCTCTTGATAGTTTGGATTGGT]
[+] EMBL AW155132 [CGTGCCGACTCGTGCCGAATCGGCACGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTTTAGTTTTTCTCGTGANNAAACGAANNAGAGAGAGAGATGCCTGCTGGATGATTGGCATTTGTCCTGGTATATCAAAGTGGTATATGAGAACAACATTTTTTACCTAAGAACCAAATGAAAACTCGAGGGGGCCCGGTCCCATTTTCCTATATGGAGTGGTTACGCTCCTTACTGCCGTGTTTACCACTGGGCTTGGAACCCCTCGTTCCCACTTATTCCTTTGGAAAATTCCCTTTTCAGATTGGGTATTCAAAAGCCCCCGTTGGCTTTCCAAATGTGCAACCGTGTGAATTAATCCCTCTTAGGGCTTTAGCGGTGGGTGTTTCTCATTGTCTTATTTCTTATTATCCGGCTTTTTTTTTTTTTTTCTTTGGGTTCCCTGTTATATGGTTTAGTGAGTGTTGTTTCTTCCCTCTCTGGTGTTGTTGCGATGTGTAGGTCTCTCTTGATAGTTTGGATTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9262#0 GCGCCGCGGCGGCCGCTCCCGCCGCGAGAAGAAGGCGGCGGCCGCGGCCGCGGCGGCGGG 60
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 GGCCGCGCCCGCTGCGCCGACGCAGGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGA 120
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 TCTGGCCTCCCTGGCCTCGACCCCCTCGCCGGCGGCGGCGGCCATGTTCGGCGTCTGGGA 180
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 CTACGAGGCGCAGCTCCAGGAGCTGCAGCGGCAGCGCGAGTGGTACCTCATGCACACGGC 240
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 GGCGGCGGATCCGTACTTCCCGCTGGCGCCGGAGCGCGAGGACCCGCCCTTCTGGTCAGC 300
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 GCAGCCGCTGCTGCGGCAGGGGACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGC 360
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 GATGATGCGGGAGCCGGGGTTCCACTGGTGCGTGCGCGACGCGGTCACCGTCGGATTCCG 420
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 CTCACTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTCGCCGTCGCCCTCGCC 480
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 GCCTCCCCTGCCGCCGACCCCCGGCCGACTCCCGCCGTCGTTCGTCGGGATGATGCCCGT 540
consensus_9262#1 ------------------------------------------------------------
consensus_9262#0 TTACTAGCCGTCGATTCGATTAGAAGAAAAAAGAAATGTAAAAAAAAAAGAGGAGAAAAA 600
consensus_9262#1 --------------------------CGTGCCGACTCGTGCCGAATCGGCACGAGAAAAA 34
** ** ** * ********
consensus_9262#0 ACTGGAATTGGGGAGGCTTGCGTGTGGA-TTGGTGA--CAGCGCAGAAGAGGAGTTTTTT 657
consensus_9262#1 ACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTT 94
**************************** ****** **********************
consensus_9262#0 TTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGC 717
consensus_9262#1 TTTTTTTTTTTT---GTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGC 151
************ *********************************************
consensus_9262#0 TGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTC 777
consensus_9262#1 TGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTC 211
************************************************************
consensus_9262#0 TTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGC 837
consensus_9262#1 TTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGC 271
************************************************************
consensus_9262#0 CTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGT 897
consensus_9262#1 CTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGT 331
************************************************************
consensus_9262#0 TTTTTCTTTTGTAGTTTTTCT-GAGAGAGCGGGAGAGAGAGAGAGAGATGCCTGCTGGAT 956
consensus_9262#1 TTTTTCTTTTTTAGTTTTTCTCGTGANNAAACGAANNAGAGAGAGAGATGCCTGCTGGAT 391
********** ********** * ** ** ***********************
consensus_9262#0 GATTGGCATTTGTTCCTGGTATATGAAAGGTGGTATATGCAGAACAACATTTT--AGTAA 1014
consensus_9262#1 GATTGGCATTTGT-CCTGGTATATCAAAG-TGGTATATG-AGAACAACATTTTTTACCTA 448
************* ********** **** ********* ************* * *
consensus_9262#0 AAAA--AAAAGA------------------------------------------------ 1024
consensus_9262#1 AGAACCAAATGAAAACTCGAGGGGGCCCGGTCCCATTTTCCTATATGGAGTGGTTACGCT 508
* ** *** **
consensus_9262#0 ------------------------------------------------------------
consensus_9262#1 CCTTACTGCCGTGTTTACCACTGGGCTTGGAACCCCTCGTTCCCACTTATTCCTTTGGAA 568
consensus_9262#0 ------------------------------------------------------------
consensus_9262#1 AATTCCCTTTTCAGATTGGGTATTCAAAAGCCCCCGTTGGCTTTCCAAATGTGCAACCGT 628
consensus_9262#0 ------------------------------------------------------------
consensus_9262#1 GTGAATTAATCCCTCTTAGGGCTTTAGCGGTGGGTGTTTCTCATTGTCTTATTTCTTATT 688
consensus_9262#0 ------------------------------------------------------------
consensus_9262#1 ATCCGGCTTTTTTTTTTTTTTTCTTTGGGTTCCCTGTTATATGGTTTAGTGAGTGTTGTT 748
consensus_9262#0 ---------------------------------------------------------
consensus_9262#1 TCTTCCCTCTCTGGTGTTGTTGCGATGTGTAGGTCTCTCTTGATAGTTTGGATTGGT 805
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||