These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1024 fasta sequence [GCGCCGCGGCGGCCGCTCCCGCCGCGAGAAGAAGGCGGCGGCCGCGGCCGCGGC-GGCGGGG-GCCGCGCCCGC-TGCGCCGACGCAGGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGATCTGGCCTCCCTGGCCTCGACCCCCTCGCCGGCGGCGGCGGCCATGTTCGGCGTCTGGGACTACGAGGCGCAGCTCCAGGAGCTGCAGCGGCAGCGCGA-GTG-GTACCTCATGCACACGGCG-GC-G-GC-GGATCC-GTACTTCCCGCTGGCGCCGGAGCGC-GA-GGACCCGCCCTTCTGGTCAGCGCAGCCGCTGCTGCGGCAGGG-GACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGCGATGATGCGGGAGCCGGGGTTCCAC-TGGTGCGTGCGCGACGCGG-TCACCGTCGGATTCCGCTCACTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTCGCCGTCGCCCTCGC-CGCCTCCCCTGCCGCCGACCCCCGGCC-GACTCCCGCCGTCGTTCGTCGGGATGATGCCCGTTTACTAGCC-GTCGATTCGATTAGAAG-AAAAAAGAAATGTAAAAAAAAAAGAGGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGG-ATTGGTG-A-CAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTGTAGTTTTTCTGAGAGAGCGGGAGAGAGAGAGAGAGATGCCTGCTGGATGATTGGCATTTGTTCCTGGTATATGAAAGGTGGTATATGCAGAACAACATTTTAGTAAAAAAAAAAGA] [+] EMBL CB668448 [GCGCCGCGGCGGCCGCTCCCGCCGCGAGAAGAAGGCGGCGGCCGCGGCCGCGGC GGCGGGG GCCGCGCCCGC TGCGCCGACGCAAGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGATCTGGCCTCCCTGGCCTCGACCCCCTCGCCGGCGGCGGCGGCCATGTTCGGCGTCTGGGACTACGAGGCGCAGCTCCAGGAGCTGCAGCGGCAGCGCGA GTG GTACCTCATGCACACGGCG GC G GC GGATCC GGACTTCCCGCTGGCGCCGGAGCGC GA GGACCCGCCCTTCTGGTCAGCGCAGCCGCTGCTGCGGCAGGG GACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGCGATGATGCGGGAGCCGGGGTTCCAC TGGTGCGTGCGCGACGCGG TCACCGTCGGATTCCGCTCACTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTCACCGACGCCCTCAC CGCCTCCCCTGCCGCCGACCCCCGGAC GACTCCCGCCGTCGTTCGACGGGATGATGCCCGCTTACTACCC GTCGATTCCATTAGAAG AAAAAAGACATGTAGAAAAAAAAGAGGAGAAACAACTGGAATTGGGGAGGCTTGC ] [+] EMBL C99728 [ GGCAGGCGGGGAGCCGCGCCCGCGTGCGCCGACGCAGGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGANCTGGCNTCCCTGGCCTCGACCCCCTCGCCGGCGGC GCGGCCATGTTCGGCGTCTGGGACTACGAGGCGCA CTCCAGGAGCTGCAGCGGCAGCGCGA GTG GTACCTCATGCACACGGCG GC G GC GGATCC GTACTTCCCGCTGGCGCCGGAGCGC GA GGACCCGCCCTTCTGGTCAGCGCA CCGCTGCTGC GCAGGG GACGCCCTCGTCGTGCCCCGAGTGCGANGCGGCGGCGGCGATGATGCGGGANCCGGGGTTCCAC TGGTGCGTGCGCGACGCGGTTCACCGTCGGATTCCGCTCANTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTCGCCGTCGCCCTCGC CGCCTCCCCTGCCGCCGAC ] [-] EMBL BI811595 [ CGCCCGC TGCGCCGACGCAGGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGATCTGGCCTCCCTGGCCTCGACCCCCTCGCCGGCGGCGGCGGCCATGTTCGGCGTCTGGGACTACGAGGCGCAGCTCCAGGAGCTGCAGCGGCAGCGCGATGTGTGTACCTCATGCACACGGCGTGCTGTGCTGGATCCTGTACTTCCCGCTGGCGCCGGAGCGCTGATGGACCCGCCCTTCTGGTCAGCGCAGCCGCTGCTGCGGCAGGGTGACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGCGATGATGCGGGAGCCGGGGTTCCACATGGTGCGTGCGCGACGCGG TCACCGTCGGATTCCGCTCACTGGTGGGGCCAATCGAGCGCCCGG GAAGAAATCCCCCTCGCCGTCG CCTCGCACGCCTCCCCTGCCG CGACCCCCGGCCAGACTCCCGCCGTCGTACGTCGGGATGATGCCCGTATACTAGCCAGTCGATTCGATAAGAAGAAAAAAAGAAATGT ACAAAAAAAGAGGAG AAAAACTGGAA TGGGGAGGCTTGCGTGTGG ATTGGTG A CAGCG ] [-] EMBL CB668449 [ CTGCTGCGGCAGGG GACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGCGATGATGCGGGAGCCGGGGTTCCAC TGGTGCGTGCGCGACGCGG TCACCGTCGGATTCCGCTCACTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTTGCCGTCGCCCTTGC CGCCTCCCCTGCCGCCGACCCCCGGCC GACTCCCGCCGTCGTTTGTCGGGATGATGCCCGTTTACTAGCC GTCGATTCGATTAGAAG AAAAAAGAAATGTAAAAAAAAAAGAGGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTGTAGTTTTTCTGAGAGAGCGGGAGAGAGAGAGAGAGATGCCTGCTGGATGATTGGCATTTGTTCCTGGTATATGAAAGGTGGTATATGCAGAACAACATTTTAGTAAAAAAAAAAGA] [+] EMBL BI806637 [ TTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACC ACATCTCTGGAACCCTCTGTTTTTTCTTTTTTA TTTTTCTGAGAGACCGGGAGAGAGAGAGAGAGAT CCT CTGGATGATT GCATTTGTTCCTGGTATATCAAA GTGGTATAT CAGAAC ACATTTTAGTAAAAA ] consensusID : consensus_9262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence [CGTGCCGACTCGTGCCGAATCGGCACGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTTTAGTTTTTCTCGTGANNAAACGAANNAGAGAGAGAGATGCCTGCTGGATGATTGGCATTTGTCCTGGTATATCAAAGTGGTATATGAGAACAACATTTTTTACCTAAGAACCAAATGAAAACTCGAGGGGGCCCGGTCCCATTTTCCTATATGGAGTGGTTACGCTCCTTACTGCCGTGTTTACCACTGGGCTTGGAACCCCTCGTTCCCACTTATTCCTTTGGAAAATTCCCTTTTCAGATTGGGTATTCAAAAGCCCCCGTTGGCTTTCCAAATGTGCAACCGTGTGAATTAATCCCTCTTAGGGCTTTAGCGGTGGGTGTTTCTCATTGTCTTATTTCTTATTATCCGGCTTTTTTTTTTTTTTTCTTTGGGTTCCCTGTTATATGGTTTAGTGAGTGTTGTTTCTTCCCTCTCTGGTGTTGTTGCGATGTGTAGGTCTCTCTTGATAGTTTGGATTGGT] [+] EMBL AW155132 [CGTGCCGACTCGTGCCGAATCGGCACGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTTTAGTTTTTCTCGTGANNAAACGAANNAGAGAGAGAGATGCCTGCTGGATGATTGGCATTTGTCCTGGTATATCAAAGTGGTATATGAGAACAACATTTTTTACCTAAGAACCAAATGAAAACTCGAGGGGGCCCGGTCCCATTTTCCTATATGGAGTGGTTACGCTCCTTACTGCCGTGTTTACCACTGGGCTTGGAACCCCTCGTTCCCACTTATTCCTTTGGAAAATTCCCTTTTCAGATTGGGTATTCAAAAGCCCCCGTTGGCTTTCCAAATGTGCAACCGTGTGAATTAATCCCTCTTAGGGCTTTAGCGGTGGGTGTTTCTCATTGTCTTATTTCTTATTATCCGGCTTTTTTTTTTTTTTTCTTTGGGTTCCCTGTTATATGGTTTAGTGAGTGTTGTTTCTTCCCTCTCTGGTGTTGTTGCGATGTGTAGGTCTCTCTTGATAGTTTGGATTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9262#0 GCGCCGCGGCGGCCGCTCCCGCCGCGAGAAGAAGGCGGCGGCCGCGGCCGCGGCGGCGGG 60 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 GGCCGCGCCCGCTGCGCCGACGCAGGAGAGGACTATCCTCAAGCGCCTCCCCGCGATGGA 120 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 TCTGGCCTCCCTGGCCTCGACCCCCTCGCCGGCGGCGGCGGCCATGTTCGGCGTCTGGGA 180 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 CTACGAGGCGCAGCTCCAGGAGCTGCAGCGGCAGCGCGAGTGGTACCTCATGCACACGGC 240 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 GGCGGCGGATCCGTACTTCCCGCTGGCGCCGGAGCGCGAGGACCCGCCCTTCTGGTCAGC 300 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 GCAGCCGCTGCTGCGGCAGGGGACGCCCTCGTCGTGCCCCGAGTGCGAGGCGGCGGCGGC 360 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 GATGATGCGGGAGCCGGGGTTCCACTGGTGCGTGCGCGACGCGGTCACCGTCGGATTCCG 420 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 CTCACTGGTGGGGCCAATCGAGCGCCCGGCGAAGAAATCCCCCTCGCCGTCGCCCTCGCC 480 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 GCCTCCCCTGCCGCCGACCCCCGGCCGACTCCCGCCGTCGTTCGTCGGGATGATGCCCGT 540 consensus_9262#1 ------------------------------------------------------------ consensus_9262#0 TTACTAGCCGTCGATTCGATTAGAAGAAAAAAGAAATGTAAAAAAAAAAGAGGAGAAAAA 600 consensus_9262#1 --------------------------CGTGCCGACTCGTGCCGAATCGGCACGAGAAAAA 34 ** ** ** * ******** consensus_9262#0 ACTGGAATTGGGGAGGCTTGCGTGTGGA-TTGGTGA--CAGCGCAGAAGAGGAGTTTTTT 657 consensus_9262#1 ACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTT 94 **************************** ****** ********************** consensus_9262#0 TTTTTTTTTTTTTTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGC 717 consensus_9262#1 TTTTTTTTTTTT---GTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGC 151 ************ ********************************************* consensus_9262#0 TGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTC 777 consensus_9262#1 TGGACACGTTGGAGCCTGCAACTAGCTTAGCTGTTACGAAGAAATTTTCTTTTTTTTTTC 211 ************************************************************ consensus_9262#0 TTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGC 837 consensus_9262#1 TTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTGGTACGAGC 271 ************************************************************ consensus_9262#0 CTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGT 897 consensus_9262#1 CTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGT 331 ************************************************************ consensus_9262#0 TTTTTCTTTTGTAGTTTTTCT-GAGAGAGCGGGAGAGAGAGAGAGAGATGCCTGCTGGAT 956 consensus_9262#1 TTTTTCTTTTTTAGTTTTTCTCGTGANNAAACGAANNAGAGAGAGAGATGCCTGCTGGAT 391 ********** ********** * ** ** *********************** consensus_9262#0 GATTGGCATTTGTTCCTGGTATATGAAAGGTGGTATATGCAGAACAACATTTT--AGTAA 1014 consensus_9262#1 GATTGGCATTTGT-CCTGGTATATCAAAG-TGGTATATG-AGAACAACATTTTTTACCTA 448 ************* ********** **** ********* ************* * * consensus_9262#0 AAAA--AAAAGA------------------------------------------------ 1024 consensus_9262#1 AGAACCAAATGAAAACTCGAGGGGGCCCGGTCCCATTTTCCTATATGGAGTGGTTACGCT 508 * ** *** ** consensus_9262#0 ------------------------------------------------------------ consensus_9262#1 CCTTACTGCCGTGTTTACCACTGGGCTTGGAACCCCTCGTTCCCACTTATTCCTTTGGAA 568 consensus_9262#0 ------------------------------------------------------------ consensus_9262#1 AATTCCCTTTTCAGATTGGGTATTCAAAAGCCCCCGTTGGCTTTCCAAATGTGCAACCGT 628 consensus_9262#0 ------------------------------------------------------------ consensus_9262#1 GTGAATTAATCCCTCTTAGGGCTTTAGCGGTGGGTGTTTCTCATTGTCTTATTTCTTATT 688 consensus_9262#0 ------------------------------------------------------------ consensus_9262#1 ATCCGGCTTTTTTTTTTTTTTTCTTTGGGTTCCCTGTTATATGGTTTAGTGAGTGTTGTT 748 consensus_9262#0 --------------------------------------------------------- consensus_9262#1 TCTTCCCTCTCTGGTGTTGTTGCGATGTGTAGGTCTCTCTTGATAGTTTGGATTGGT 805 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||