These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1321 fasta sequence [CGGAGGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGGATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAGACAATTAAGATGTACCATGCAAGTGCACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTACCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTATGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAAGAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTAT-GCTTTTTCATGTGTAAAAGGAGGCTAACATGTGCTACACGGCCGGCCATCGTTCTCCATTGTCCATTTTTCTTCTGCGTTTA---GACATCACAGTAGTCCAGAAGGTTGTTTGTGTTGTTTTACTGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGTGCTATGCTTGATTTCTCTCTCCACTGCTCGACACCAACCTGAACTTTTTATTGTTTGTCGTTC-AAAAAAAAACTTTTTATTGTCACCTGCGAGCTGACTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCAGTTTGAT] [+] EMBL AK069466 [CGGAGGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGGATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAGACAATTAAGATGTACCATGCAAGTGCACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTACCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTATGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAAGAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTAT GCTTTTTCATGTGTAAAAGGAGGCTAACATGTGCTACACGGCCGGCCATCGTTCTCCATTGTCCATTTTTCTTCTGCGTTTA GACATCACAGTAGTCCAGAAGGTTGTTTGTGTTGTTTTACTGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGTGCTATGCTTGATTTCTCTCTCCACTGCTCGACACCAACCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAAAACTTTTTATTGTCACCTGCGAGCTGACTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCAGTTTGAT] [+] EMBL AK104871 [ AGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGGATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAAACAATTAAGATGTACCATGCAAGTGCACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTACCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTATGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAAGAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTAT GCTTTTTCATGTGTAAAAGGAGGCTAACATGTGCTACACGGCCGGCCATCGTTCTCCATTGTCCATTTTTCTTCTGCGTTTA GACATCACAGTAGTCCAGAAGGTTGTTTGTGTTGTTTTACTGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGTGCTATGCTTGATTTCTCTCTCCACTGCTCGACACCAACCTGAACTTTTTATTGTTTGTCGTTC AAAAAAAAACTTTTTATTGTCACCTGCGAGCTGACTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCC ] [+] EMBL BI800901 [ GCTACAGATAT CAAGGAAAAGGATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGAT GGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTT CAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCC AACCCTGATTTAGTGGTTCAGTGTTTGAAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTTACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGTGTTACATACAAATAGTCCTAT GCTTTTACATGTGT AAGGAGGC AACATGTGCTACACGGCCGGCCATCGTTCTCCGTTGTCCATTTTTCTTCTGCGTTTAGACGACATCACAGTAGTCCAGAAGGTTTTTTGTGTTGTTTTACTGTAACGCTGTAAAGAAAAAGTCT ATG CCTATGCTTGATTAATCTCTCCACTGCTCGACACC ACCTGAACTTTTTATTGTTTGTCGTTC CAAAAAAAATTTTTTATCGTCAaaaa ] [+] EMBL AA749735 [ GTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGC GCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGAAAAGCTGTTGCA NG GTCATGCCCACCGAGGTTCTTACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGTGTTACATACAAATAGTCCTATAGCTTTTACATGTGT ] consensusID : consensus_9275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [TATGCTTTTACATGTGTAAGGAGGCAACATGTGCTACACGGCCGGCCATCGTTCTCCGTTGTCCATTTTTCTTCTGCGTTTAGACGACATCACAGTAGTCCAGAAGGTTTTTTGTGTTGTTTTACGTGTAACGCTGTAAAGAAAAAGTCTATGCCTATGCTTGATTAATCTCTCCACTGCTCGACACCACCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAATTTTTTATCGTCACCTGCGAGCTGACTGTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCAGTTTGATCCAAAA] [+] EMBL BI800235 [TATGCTTTTACATGTGTAAGGAGGCAACATGTGCTACACGGCCGGCCATCGTTCTCCGTTGTCCATTTTTCTTCTGCGTTTAGACGACATCACAGTAGTCCAGAAGGTTTTTTGTGTTGTTTTACGTGTAACGCTGTAAAGAAAAAGTCTATGCCTATGCTTGATTAATCTCTCCACTGCTCGACACCACCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAATTTTTTATCGTCACCTGCGAGCTGACTGTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCAGTTTGATCCAAAA] consensusID : consensus_9275#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence [GTAAAGAGCGATATTCTGCNNCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGAAAAGCTNTTGCAGCNNGTCATGCCCACCGAGGTTCTTACCTATAAAGAGNGGCNACTATTTGAAAGAGCGATTGAGNNTTACATACAAATAGTCCTATNCTTT] [+] EMBL AA749731 [GTAAAGAGCGATATTCTGCNNCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGAAAAGCTNTTGCAGCNNGTCATGCCCACCGAGGTTCTTACCTATAAAGAGNGGCNACTATTTGAAAGAGCGATTGAGNNTTACATACAAATAGTCCTATNCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9275#0 CGGAGGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGAT 60 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 GGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTC 120 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 CGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTA 180 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 CGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAA 240 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 GTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGG 300 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 ATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAA 360 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 GGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTG 420 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 GCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAGACAATTAAGATGTACCATGCAAGTGC 480 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 ACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGA 540 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 ATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTA 600 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 CCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTA 660 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAA 720 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 GAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAA 780 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 CATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGT 840 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTT 900 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 AGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTAT 960 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 AAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTATGCTTT 1020 consensus_9275#1 ----------------------------------------------------TATGCTTT 8 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TTCATGTGTAAAAGGAGGCTAACATGTGCTACACGGCCGGCCATCGTTCTCCATTGTCCA 1080 consensus_9275#1 TACATGTGTAA--GGAGGC-AACATGTGCTACACGGCCGGCCATCGTTCTCCGTTGTCCA 65 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TTTTTCTTCTGCGTTTAGAC---ATCACAGTAGTCCAGAAGGTTGTTTGTGTTGTTTTAC 1137 consensus_9275#1 TTTTTCTTCTGCGTTTAGACGACATCACAGTAGTCCAGAAGGTTTTTTGTGTTGTTTTAC 125 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 -TGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGTGCTATGCTTGATTTCTCTCTCCACT 1196 consensus_9275#1 GTGTAACGCTGTAAAGAAAAAGTCT------ATGC-CTATGCTTGATTAATCTCTCCACT 178 consensus_9275#2 GTAAAGAGCGATATTCTGCNNCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGT 60 * * ** ** * * * * * ***** * ** * consensus_9275#0 GCTCGACACCAACCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAAACTTTTTATTGTCA 1256 consensus_9275#1 GCTCGACACCA-CCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAA-TTTTTTATCGTCA 236 consensus_9275#2 GTTTGA---------AAAGCTNTTGCAGCNNGTCATGCCCACCGAGGTTCTTACCTATAA 111 * * ** ** * ** * *** * * * * * ** * * consensus_9275#0 CCTGCGAGCTGACTG--GTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCA 1314 consensus_9275#1 CCTGCGAGCTGACTGTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCA 296 consensus_9275#2 A--GAGNGGCNACTA-----TTTGAA--AGAGCGATTGAGNNTTACATACAAATAGTCCT 162 * * * *** **** * ** *** * ** * * * *** consensus_9275#0 GTTTGAT------ 1321 consensus_9275#1 GTTTGATCCAAAA 309 consensus_9275#2 ATNCTTT------ 169 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||