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Oryza sativa
cluster # 9281 cluster # 9281       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9281#0 length = 1328 sequences # 5  
consensus_9281#1 length = 633 sequences # 1  

consensusID : consensus_9281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1328
fasta sequence
                              [GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT-CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCG-GCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGCCAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGCGGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAACAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTTAGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGGTGAAACAT]

[+] EMBL AK105512             [GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTTCCCCTGGACAAGGCCGCGGCCCGCTCCACCCCACTCGCGCTCCCCGCCGCTGGGGCG GCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGCCAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGCGGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAACAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCCGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTTAGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGGTGAAACAT]
[+] EMBL BI799376             [                 ATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCGCGCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI799363             [                 ATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCT GGGC  GCGGC GCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AA751486             [                                                                                                                                                                                                                                                                                                                  AGCAATGTGTTGACCATTGGCAGCATCAGGNGCACGCTGATGAAGCATGAGGNCACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGNTCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGNNGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTNTGGCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AA750462             [                                                                                                                                                                                                                                                                                                                                                            AAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_9281#0 GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGC TTCCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCGGC GGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGC CAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGC GGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAA CAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACAC CATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCC CAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGAC CGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCC TGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGC TGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCC AAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTT AATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTT CCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGAT GGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGC CATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGA GCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCA AGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGT CCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTT ATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTT AGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGA ATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGG TGAAACAT



consensusID : consensus_9281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence
                              [CCAGAGGCCGAGCCAAGGGGGGCCATGTTAATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTTGGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAAAAAA]

[-] EMBL CA759527             [CCAGAGGCCGAGCCAAGGGGGGCCATGTTAATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTTGGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAAAAAA]


>consensus_9281#1 CCAGAGGCCGAGCCAAGGGGGGCCATGTTAATTCTGCAGGCCCTCTCCAAGAGGATTCAC TATGGCAAGTATGTGCCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCA ATTTTAAACAAGGACAGTGCCAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGAT GACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTNGGCCAGGTGGTGAGTGAAGAT CTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAG TGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGA GTTTTGAGCCCCAACTATCCTTTGCCTGTCCATTTACGAGATGCTCTCTCTCTCCAGTTT CAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGT TCAGTTTTAGTTTCAGTAGTTTGCAGTTTGGTATCTTCATGTAATCCTGTAGTTGAAAGT TCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTG AAAAGCCAAGATTTGAGCTAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9281#0      GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGC 60
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      TTCCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCGGC 120
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      GGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGC 180
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      CAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGC 240
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      GGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAA 300
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      CAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACAC 360
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      CATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCC 420
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      CAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGAC 480
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      CGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCC 540
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      TGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGC 600
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      TGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCC 660
consensus_9281#1      ------------------------------------------------------------
                                                                                  

consensus_9281#0      AAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTT 720
consensus_9281#1      ------------------------------CCAGAGGCCGAGC-CAAGGGGGGCCATGTT 29
                                                    *    *  ***** ** *  *** ******

consensus_9281#0      AATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTT 780
consensus_9281#1      AATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTT 89
                      ************ ********************************* *************

consensus_9281#0      CCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGAT 840
consensus_9281#1      CCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGAT 149
                      ********************************* **************** *********

consensus_9281#0      GGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGC 900
consensus_9281#1      GGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGC 209
                      ************************************************************

consensus_9281#0      CATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGA 960
consensus_9281#1      CATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGA 269
                      ********* **************************************************

consensus_9281#0      GCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCA 1020
consensus_9281#1      GCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCA 329
                      ************************************************************

consensus_9281#0      AGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGT 1080
consensus_9281#1      AGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGT 389
                      ************************************************************

consensus_9281#0      CCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTT 1140
consensus_9281#1      CCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTT 449
                      **** *** ***************************************************

consensus_9281#0      ATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTT 1200
consensus_9281#1      ATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTT 509
                      ********************************************* **************

consensus_9281#0      AGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGA 1260
consensus_9281#1      GGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGA 569
                       ***********************************************************

consensus_9281#0      ATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGG 1320
consensus_9281#1      ATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAA 629
                      ***************************************************     *   

consensus_9281#0      TGAAACAT 1328
consensus_9281#1      AAAA---- 633
                        **    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)