These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 690 fasta sequence [TCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGGTATCTCTCAGGATCTTCTTAGAGCTGCTGTTCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTAACATGTATGACCTATCTGACGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTTGCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCTTCGGTAAGGCGCTAAGGCCAAGCCACAGGAATGCG-AG-CATGAGTCCGTG-CCCTT-CACAATCCTTGACACCACCCACACATCTGACAGTCGCTTCGGGAGATCTTGTACAGCTAAAAGTTTCTTTTTCTGGCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGATTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAAAAAAAAAAAAAA] [+] EMBL AA750630 [TCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGGTATCTCTCAGGATCTTCTTAGAGCTGCTGTTCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTAACATGTATGACCTATCTGACGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGtg ] [+] EMBL D43303 [ GATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGATATCTCTCAGGATCTTCTTAGAGCTGCTGATCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTGACATGTATGACCTATCTGAAGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTTGCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCTTCGGTAAGGCGCTAAGGCCAAGCCACAGGAATGCG AG CATGAGTCCGTG CCCTT CACAATCC ] [+] EMBL BI306096 [ gATGTTGGAGCAGTTTGAAAAGATTTGCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTTCGCAACTTCTTCGCTAAGGCGCTAAGGCCAAGCCACAGGAATGCGCAGCCATGAGTCCGTGCCCCTTCCACAATCCTTGACACCACCCACACATCTGACAGTCGCTTCGGGAGATCTTGTACAGCTAAAAGTTTCTTTTTCTGGCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGATTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAAAAAAAAAAAAAA] [+] EMBL AU097196 [ CTTGTACAGCTAAAAGTTTCTTTTTCTGNCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGACTAAAACAGAGCCCAAANCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAAAAAAAAAAAAA ] consensusID : consensus_9283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [ACATTGGNATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGACTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACAATGCAGAAAT] [+] EMBL AU101542 [ACATTGGNATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGACTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACAATGCAGAAAT] consensusID : consensus_9283#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [GCTGGGATAGGTTTACTTCGTTTCNCCTTGGCATAGTCNCCGNGTTTAGGGCCNCTTTCCCAGTCCNGNGCTCCGTGTNTGTCCGTNTCTTTGNTGATGCAGNGGNTAAGATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACANTGNNGAAATGNTAATCAGATTGGNGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101541 [GCTGGGATAGGTTTACTTCGTTTCNCCTTGGCATAGTCNCCGNGTTTAGGGCCNCTTTCCCAGTCCNGNGCTCCGTGTNTGTCCGTNTCTTTGNTGATGCAGNGGNTAAGATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACANTGNNGAAATGNTAATCAGATTGGNGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9283#0 TCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGGTATCTCTCAGGATC 60 consensus_9283#1 ------------------------------------------------------------ consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 TTCTTAGAGCTGCTGTTCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAA 120 consensus_9283#1 ------------------------------------------------------------ consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 TTGCGCAGGATGTGAATGTAGACAACGTTTCTAACATGTATGACCTATCTGACGCTTTTC 180 consensus_9283#1 ------------------------------------------------------------ consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 ATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTT 240 consensus_9283#1 ------------------------------------------------------------ consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 GCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCT 300 consensus_9283#1 ------------------------------------------------------------ consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 TCGGTAAGGCGCTAAGGCCAAGCCACAGGAATGCGAGCATGAGTCCGTGCCCTTCACAAT 360 consensus_9283#1 ------------------------------------------------------------ consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 CCTTGACACCACCCACACATCTGACAGTCGCTTCGGGAGATCTTGTACAGCTAAAAGTTT 420 consensus_9283#1 ------------------------------------------------------------ consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 CTTTTTCTGGCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTA 480 consensus_9283#1 ----------------ACATTGGNATTCGATGGCACCAACAACATTGTAACATCCTTTTA 44 consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 TTCGATTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCG 540 consensus_9283#1 TTCGACTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCG 104 consensus_9283#2 ------------------------------------------------------------ consensus_9283#0 GACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAG 600 consensus_9283#1 GACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAG 164 consensus_9283#2 -----------GCTGGGATAGGTTTACTTCGTTTCNCCTTGGCATAGTCNCCGNGTTTAG 49 ************************ ************* *** ****** consensus_9283#0 GGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAA 660 consensus_9283#1 GGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAA 224 consensus_9283#2 GGCCNCTTTCCCAGTCCNGNGCTCCGTGTNTGTCCGTNTCTTTGNTGATGCAGNGGNTAA 109 **** ************ * ********* ******* ****** ******** ** *** consensus_9283#0 GATCGATCTGTGTATTAAAAAAAAAAAAAA------------------------------ 690 consensus_9283#1 GATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAA 284 consensus_9283#2 GATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAA 169 ***************** * consensus_9283#0 ------------------------------------------------------------ consensus_9283#1 CAATGCAGAAAT------------------------------------------------ 296 consensus_9283#2 CANTGNNGAAATGNTAATCAGATTGGNGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAA 229 consensus_9283#0 ----------------------------------------- consensus_9283#1 ----------------------------------------- consensus_9283#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 270 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||