cluster # 9283

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9283 cluster # 9283 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9283#0 length = 690 sequences # 4

consensus_9283#1 length = 296 sequences # 1
consensus_9283#2 length = 270 sequences # 1

consensusID : consensus_9283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 690
fasta sequence

                              [TCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGGTATCTCTCAGGATCTTCTTAGAGCTGCTGTTCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTAACATGTATGACCTATCTGACGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTTGCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCTTCGGTAAGGCGCTAAGGCCAAGCCACAGGAATGCG-AG-CATGAGTCCGTG-CCCTT-CACAATCCTTGACACCACCCACACATCTGACAGTCGCTTCGGGAGATCTTGTACAGCTAAAAGTTTCTTTTTCTGGCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGATTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAAAAAAAAAAAAAA]

[+] EMBL AA750630             [TCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGGTATCTCTCAGGATCTTCTTAGAGCTGCTGTTCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTAACATGTATGACCTATCTGACGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL D43303               [         GATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGATATCTCTCAGGATCTTCTTAGAGCTGCTGATCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTGACATGTATGACCTATCTGAAGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTTGCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCTTCGGTAAGGCGCTAAGGCCAAGCCACAGGAATGCG AG CATGAGTCCGTG CCCTT CACAATCC                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BI306096             [                                                                                                                                                                                                                      gATGTTGGAGCAGTTTGAAAAGATTTGCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTTCGCAACTTCTTCGCTAAGGCGCTAAGGCCAAGCCACAGGAATGCGCAGCCATGAGTCCGTGCCCCTTCCACAATCCTTGACACCACCCACACATCTGACAGTCGCTTCGGGAGATCTTGTACAGCTAAAAGTTTCTTTTTCTGGCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGATTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAAAAAAAAAAAAAA]
[+] EMBL AU097196             [                                                                                                                                                                                                                                                                                                                                                                                                                     CTTGTACAGCTAAAAGTTTCTTTTTCTGNCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGACTAAAACAGAGCCCAAANCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAAAAAAAAAAAAA ]




>consensus_9283#0
TCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGGTATCTCTCAGGATC
TTCTTAGAGCTGCTGTTCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAA
TTGCGCAGGATGTGAATGTAGACAACGTTTCTAACATGTATGACCTATCTGACGCTTTTC
ATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTT
GCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCT
TCGGTAAGGCGCTAAGGCCAAGCCACAGGAATGCGAGCATGAGTCCGTGCCCTTCACAAT
CCTTGACACCACCCACACATCTGACAGTCGCTTCGGGAGATCTTGTACAGCTAAAAGTTT
CTTTTTCTGGCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTA
TTCGATTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCG
GACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAG
GGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAA
GATCGATCTGTGTATTAAAAAAAAAAAAAA

consensusID : consensus_9283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [ACATTGGNATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGACTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACAATGCAGAAAT]

[+] EMBL AU101542             [ACATTGGNATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGACTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACAATGCAGAAAT]




>consensus_9283#1
ACATTGGNATTCGATGGCACCAACAACATTGTAACATCCTTTTATTCGACTAAAACAGAG
CCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCGGACCAGCCTAGGCTGG
GATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAGGGCCACTTTCCCAGTC
CAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAAGATCGATCTGTGTATT
AGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACAATGCAGAAAT

consensusID : consensus_9283#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [GCTGGGATAGGTTTACTTCGTTTCNCCTTGGCATAGTCNCCGNGTTTAGGGCCNCTTTCCCAGTCCNGNGCTCCGTGTNTGTCCGTNTCTTTGNTGATGCAGNGGNTAAGATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACANTGNNGAAATGNTAATCAGATTGGNGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101541             [GCTGGGATAGGTTTACTTCGTTTCNCCTTGGCATAGTCNCCGNGTTTAGGGCCNCTTTCCCAGTCCNGNGCTCCGTGTNTGTCCGTNTCTTTGNTGATGCAGNGGNTAAGATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACANTGNNGAAATGNTAATCAGATTGGNGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9283#2
GCTGGGATAGGTTTACTTCGTTTCNCCTTGGCATAGTCNCCGNGTTTAGGGCCNCTTTCC
CAGTCCNGNGCTCCGTGTNTGTCCGTNTCTTTGNTGATGCAGNGGNTAAGATCGATCTGT
GTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAACANTGNNGAAA
TGNTAATCAGATTGGNGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9283#0      TCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGGTATCTCTCAGGATC 60
consensus_9283#1      ------------------------------------------------------------
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      TTCTTAGAGCTGCTGTTCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAA 120
consensus_9283#1      ------------------------------------------------------------
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      TTGCGCAGGATGTGAATGTAGACAACGTTTCTAACATGTATGACCTATCTGACGCTTTTC 180
consensus_9283#1      ------------------------------------------------------------
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      ATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTT 240
consensus_9283#1      ------------------------------------------------------------
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      GCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCT 300
consensus_9283#1      ------------------------------------------------------------
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      TCGGTAAGGCGCTAAGGCCAAGCCACAGGAATGCGAGCATGAGTCCGTGCCCTTCACAAT 360
consensus_9283#1      ------------------------------------------------------------
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      CCTTGACACCACCCACACATCTGACAGTCGCTTCGGGAGATCTTGTACAGCTAAAAGTTT 420
consensus_9283#1      ------------------------------------------------------------
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      CTTTTTCTGGCGTTGGACATTGGCATTCGATGGCACCAACAACATTGTAACATCCTTTTA 480
consensus_9283#1      ----------------ACATTGGNATTCGATGGCACCAACAACATTGTAACATCCTTTTA 44
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      TTCGATTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCG 540
consensus_9283#1      TTCGACTAAAACAGAGCCCAAATCATGGTAAGAGCATATGGCTTAGCCAGCCATGTCTCG 104
consensus_9283#2      ------------------------------------------------------------
                                                                                  

consensus_9283#0      GACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAG 600
consensus_9283#1      GACCAGCCTAGGCTGGGATAGGTTTACTTCGTTTCGCCTTGGCATAGTCACCGAGTTTAG 164
consensus_9283#2      -----------GCTGGGATAGGTTTACTTCGTTTCNCCTTGGCATAGTCNCCGNGTTTAG 49
                                 ************************ ************* *** ******

consensus_9283#0      GGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAA 660
consensus_9283#1      GGCCACTTTCCCAGTCCAGAGCTCCGTGTATGTCCGTCTCTTTGATGATGCAGAGGATAA 224
consensus_9283#2      GGCCNCTTTCCCAGTCCNGNGCTCCGTGTNTGTCCGTNTCTTTGNTGATGCAGNGGNTAA 109
                      **** ************ * ********* ******* ****** ******** ** ***

consensus_9283#0      GATCGATCTGTGTATTAAAAAAAAAAAAAA------------------------------ 690
consensus_9283#1      GATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAA 284
consensus_9283#2      GATCGATCTGTGTATTAGTGCTGTAGTTGCAATCAGTTTCGTCTCCTTCGTGTTGTTTAA 169
                      *****************       *                                   

consensus_9283#0      ------------------------------------------------------------
consensus_9283#1      CAATGCAGAAAT------------------------------------------------ 296
consensus_9283#2      CANTGNNGAAATGNTAATCAGATTGGNGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAA 229
                                                                                  

consensus_9283#0      -----------------------------------------
consensus_9283#1      -----------------------------------------
consensus_9283#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 270