These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1480 fasta sequence [TTTTTTTTTTTATGAGGCATGGCAGATGTGCCATCTATCTGATATTCTACTCATATGACTTTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTATCTTTCTAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACTTGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAATTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTCATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTTGAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCATCATCGCCTCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCCAGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGCCGTCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCGCGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATGCACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGCGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAATCACACTCGTCGACGGCACGGACGCCAGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCTGGAAGGCCTCCTGCGTTAGTGCTGACCCTGCCCAGGAAAAACAAACAAGATGGAAATACCAGTTGGAAGCCTATTAGTTTCTGATTTCAGAATTTGAAATTTGTTTTGTTTGTGAGGAATTTAACATCTTTGATGTCCGGTTAGCATTTTGGATCTTCCACGAAATTTGAGTTGCTTCCCGTACAAAATTTTGGTCCGTGAAACG] [+] EMBL CA762963 [TTTTTTTTTTTATGAGGCATGGCAGATGTGCCATCTATCTGATATTCTACTCATATGACTTTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTATCTTTCTAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACTTGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAATTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTCATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTTGAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCATCATCGCCTCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGACGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCAACGGCTGGGAGCCCGACACGCCAGATGTCGCAAATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCCCCt ] [+] EMBL CB621476 [ cTTTTTATTTATGAGGCATGGCAGATGTGCCATCTATCTGATATTCTACTCATATGACTTTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTCTCTTTCTAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACTTGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAATTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTCATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTTGAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCAT A TCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCCAGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGC ] [+] EMBL CB620857 [ CATGGCAGATGTGCCATCTATCTGATCTTCTACTCATATGACTTTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTATCTTTCTAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACTTGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAATTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTCATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTTGAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCAT A TCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCCAGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCAC ] [+] EMBL AK060146 [ TCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCATCATCGCCTCAATCCTCTCTCTCATGCTGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCCAGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGATACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGCCGTCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCGCGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATGCACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGCGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAATCACACTCGTCGACGGCACGGACGCCAGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCTGGAAGGCCTCCTGCGTTAGTGCTGACCCTGCCCAGGAAAAACAAACAAGATGGAAATACCAGTTGGAAGCCTATTAGTTTCTGATTTCAGAATTTGAAATTTGTTTTGTTTGTGAGGAATTTAACATCTTTGATGTCCGGTTAGCATTTTGGATCTTCCACGAAATTTGAGTTGCTTCCCGTACAAAATTTTGGTCCGTGAAACG] consensusID : consensus_9287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 800 fasta sequence [AGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGCCGCCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCACGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATACACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGAGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAGTCACACTCGTCGACGGCACGGACGCCGGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCATGAGCGTCGATTATTTTGTCCCGAATGAGTTCCGGAACGCTGAGTAGAGACGCCATGACGGCGGCCGACGCCGGCCTGACGGCAGCGGACTTCACGCCGGTGCGCCTCGCCACGTCCAGCGCCCACGTCCCGACATCGTAATCCGCCACCACGCACCTGATCCTCCCCCAGCCGTCGCCGTCGCCGTCCACCGCCGCCTCTTCCTCGCCGCTCCGCCGGATGAGAAGCTC] [-] EMBL CB620856 [AGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGCCGCCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCACGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATACACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGAGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAGTCACACTCGTCGACGGCACGGACGCCGGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCATGAGCGTCGATTATTTTGTCCCGAATGAGTTCCGGAACGCTGAGTAGAGACGCCATGACGGCGGCCGACGCCGGCCTGACGGCAGCGGACTTCACGCCGGTGCGCCTCGCCACGTCCAGCGCCCACGTCCCGACATCGTAATCCGCCACCACGCACCTGATCCTCCCCCAGCCGTCGCCGTCGCCGTCCACCGCCGCCTCTTCCTCGCCGCTCCGCCGGATGAGAAGCTC] [-] EMBL CB621475 [ CCATGNCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCACGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATACACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGAGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAGTCACACTCGTCGACGGCACGGACGCCGGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCATGAGCGTCGATTATTTTGTCCCGAATGAGTTCCGGAACGCTGAGTAGAGACGCCATGACGGCGGCCGACGCCGGCCTGACGGCAGCGGACTTCACGCCGGTGCGCCTCGCCACGTCCAGCGCCCACGTCCCGACATCGTAATCCGCCACCACGCACCTGATCCTCCCCCAGCCGTCGCCGTCGCCGTCCACCGCCGCCTCTTCCTCGCCGCTCCGCCGGATGAGctcctc] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9287#0 TTTTTTTTTTTATGAGGCATGGCAGATGTGCCATCTATCTGATATTCTACTCATATGACT 60 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 TTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTATCTTTC 120 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 TAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACT 180 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 TGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAA 240 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 TTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTC 300 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 ATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTT 360 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 GAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACA 420 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 TGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCATCA 480 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 TCGCCTCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGA 540 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 GGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCC 600 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 AGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGA 660 consensus_9287#1 ------------------------------------------------------------ consensus_9287#0 ACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGACACGAAGC 720 consensus_9287#1 ---------------------------------------------AGTGCGACACGAAGC 15 *************** consensus_9287#0 ACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCAC 780 consensus_9287#1 ACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCAC 75 ************************************************************ consensus_9287#0 GGCCGCCGTCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCG 840 consensus_9287#1 GGCCGCCGCCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCA 135 ******** ************************************************** consensus_9287#0 CGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGA 900 consensus_9287#1 CGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGA 195 ************************************************************ consensus_9287#0 GCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGA 960 consensus_9287#1 GCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGA 255 ************************************************************ consensus_9287#0 CGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATGCACGCGCCGTCCTCGG 1020 consensus_9287#1 CGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATACACGCGCCGTCCTCGG 315 ******************************************* **************** consensus_9287#0 GGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGG 1080 consensus_9287#1 GGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGG 375 ************************************************************ consensus_9287#0 GGAGGATCTTGGGGAACCGCGCGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGA 1140 consensus_9287#1 GGAGGATCTTGGGGAACCGCGAGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGA 435 ********************* ************************************** consensus_9287#0 GGATGTAATCACACTCGTCGACGGCACGGACGCCAGCGAGGACGCAACTGAACAGCAGCT 1200 consensus_9287#1 GGATGTAGTCACACTCGTCGACGGCACGGACGCCGGCGAGGACGCAACTGAACAGCAGCT 495 ******* ************************** ************************* consensus_9287#0 CCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCA 1260 consensus_9287#1 CCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCA 555 ************************************************************ consensus_9287#0 TGTCCGGCGACAGCTGGAAGGCCTCCTGCGTTAGTGCTGACCCTGCCCAGGAAAAACAAA 1320 consensus_9287#1 TGTCCGGCGACAGCATGAGCGTCGATTATTTT-GTCCCGAATGAGTTCCGGAACGCTGAG 614 ************** ** * * * ** ** * ** * * **** * consensus_9287#0 CAAG------ATGGAAATACCAGTTGGAAGCCTATTAGTTTCTGATTTCAGAATT-TGAA 1373 consensus_9287#1 TAGAGACGCCATGACGGCGGCCGACGCCGGCCTGACGGCAGCGGACTTCACGCCGGTGCG 674 * *** * * * **** * * ** **** ** consensus_9287#0 ATTTGTTTTGTTTGTGAGGAATTTAACATCTTTGATGTCCGGT-TAGCATTTTGGATCTT 1432 consensus_9287#1 CCTCGCCACGTCCAGCGCCCACGTCCCGACATCGTAATCCGCCACCACGCACCTGATCCT 734 * * ** * * * * * * **** * **** * consensus_9287#0 CCACGAAATTTGA--GTTGCTTCCCGT-ACAAAATTTTGGTCCGTGAAACG--------- 1480 consensus_9287#1 CCCCCAGCCGTCGCCGTCGCCGTCCACCGCCGCCTCTTCCTCGCCGCTCCGCCGGATGAG 794 ** * * * ** ** ** * * ** ** * ** consensus_9287#0 ------ consensus_9287#1 AAGCTC 800 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||