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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TTTTTTTTTTTTTTTTATCGGCGTTTCTTTCGTGGTCCGCGCGGATGGTGCGGTTTGTTTTGAGCCGGATGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGCCGGCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATTGAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGCTGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCTCGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGGTCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGGGNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACAGCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTGTCTCGTCCTCTGGCCACCTAATCAAGCT]
[+] EMBL CA759199 [TTTTTTTTTTTTTTTTATCGGCGTTTCTTTCGTGGTCCGCGCGGATGGTGCGGTTTGTTTTGAGCCGGATGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGCCGGCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATTGAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGCTGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCTCGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGGTCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGGGNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACAGCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTGTCTCGTCCTCTGGCCACCTAATCAAGCT]
consensusID : consensus_929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTTCCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTTTAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAATTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGATTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATTATTCTTTTGGACTGTACTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTTTTCTCCACAAGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCGGCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATTGCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGCTGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGGACGGCTCGATCTATTGCATGCATGTCAAGAACATCA]
[-] EMBL CB680521 [ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTTCCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTTTAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAATTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGATTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATTATTCTTTTGGACTGTACTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTTTTCTCCACAAGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCGGCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATTGCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGCTGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGGACGGCTCGATCTATTGCATGCATGTCAAGAACATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_929#0 ------------------------------------------------------------
consensus_929#1 ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTT 60
consensus_929#0 ------------------------------------------------------------
consensus_929#1 CCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTT 120
consensus_929#0 -----------------------------------------------TTTTTTTTTTTTT 13
consensus_929#1 TAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAA 180
* *
consensus_929#0 TTTATCGGCGTTTCT---TTCGTGGTCCGCGCGGATG-GTGCGGTTTGTTTTGAGCCGGA 69
consensus_929#1 TTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGA 240
***** * * ** * * ** *** ** * * ** * ***
consensus_929#0 TGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTT 129
consensus_929#1 TTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATT-ATTCTTTTGGACTGTACTTT 299
* * * * ** * * ** *** **************** ***
consensus_929#0 TGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCG 189
consensus_929#1 TGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTT-TTCTCCACAAG 358
******************************* ********* ** *** ******** *
consensus_929#0 AGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCG------------CCG 237
consensus_929#1 AGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCG 418
********************************************* ***
consensus_929#0 GCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATT 297
consensus_929#1 GCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATT 478
********** ************** **************************** *****
consensus_929#0 GAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGC 357
consensus_929#1 GCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGC 538
* ************************ ************** ****** ***** ** **
consensus_929#0 TGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCT 417
consensus_929#1 TGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGG---ACGGCT 595
****** ************************** * ******* ** ** ******
consensus_929#0 CGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGG 477
consensus_929#1 CGATCTATTGCATGCATGTCAAGAACATCA------------------------------ 625
** ** *** *** * ** * **
consensus_929#0 TCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGG 537
consensus_929#1 ------------------------------------------------------------
consensus_929#0 GNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACA 597
consensus_929#1 ------------------------------------------------------------
consensus_929#0 GCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTG 657
consensus_929#1 ------------------------------------------------------------
consensus_929#0 TCTCGTCCTCTGGCCACCTAATCAAGCT 685
consensus_929#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||