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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1422 fasta sequence
[AAATCTTNGACTAGTATAATTACTGTGATTTTTTAATTAATCAATGTGGTGTTGTTCTTTGCAGTGTGTTGGAGGCGCTTGATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGCGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGNNTTTCCNTCTCCTCCCTCGGCCTCGTGCGCGCCGACNACCTCCTCACGGTGCGGCCCCACGANGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGGTCGCCGTCGTCGACNACNGCGGCCACCTCGTCGGCG-ANATCTCCCCCGCGCTCCTCGCGTTCTGCGACGAGACGGCGGCCGCGGCCATCGCGACGCTGTCGGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCGGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGGCGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCC-AAGAAAGAGTTCTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAGCG-TTTTGAACTCTGAACTCTGAAGTATTTGTCTCTGCCTTGGCCTGGTGCTGATGAACAAACTGAGACTTTTTGGATATGCCTTTCAAATAAAAAAAATAAAAAGATATTCTAGTTGCCCTCTCTAAACTAAAAAGGACTACACTCTTCCCTCCTCTGCGTTGGTTTGTGTTTTGGTTTTTCTTTGGGGGGGGGCCTGACCACTCTGCCTTATTTGTGGTGTTTTCGCGCCTTAGTGCTGGATGTTGCAAAAGGGAGTGGAAAATTGTGTTCACACTATCACTTTATAAAGCGCTTTTCCCATTTGATTACAGAAGTTTATTTGTCCTTGAATGTGTGCTGTTATGGTTGAATGCTGTTGCCTTTAGAACGATTGTTAGATTGGTACTTGCTTGGTCTGAGCGCTC]
[+] EMBL AA751809 [AAATCTTNGACTAGTATAATTACTGTGATTTTTTAATTAATCAATGTGGTGTTGTTCTTTGCAGTGTGTTGGAGGCGCTTGATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGCGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGNNTTTCCNTCTCCTCCCTCGGCCTCGTGCGCGCCGACNACCTCCTCACGGTGCGGCCCCACGANGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGGTCGCCGTCGTCGACNACNGCGGCCACCTCGTCGGCGAANATCTCCCCCGCGCTCCTCGCGTT ]
[+] EMBL AK061011 [ GTTGTTCTTTGCAGTGTGTTGGAGGCGCTTGATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGCGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGCCGCTCCGTCTCCTCCCTCGGCCTCGTGCGCGCCGACGACCTCCTCACGGTGCGGCCCCACGAGGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGGTCGCCGTCGTCGACGACGGCGGCCACCTCGTCGGCG AGATCTCCCCCGCGCTCCTCGCGTCCTGCGACGAGACGGCGGCCGCGGCCATCGCGACGCTGTCGGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCGGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGGCGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCC AAGAAAGAGTTCTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAGCG TTTTGAACTCTGAACTCTGAAGTATTTGTCTCTGCCTTGGCCTGGTGCTGATGAACAAACTGAGACTTTTTGGATATG ]
[+] EMBL AU069917 [ CATCGCGACGCTGTCGGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCGGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGGCGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCANCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCANCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCCAAAGAA ]
[+] EMBL BE039875 [ GACGCTGTCGGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCAGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGGCGGTGTCCTCGTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCC AAGAAAGAGTTCTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAGCGTTTTTGAACTCTGAACTCTGAAGTATTTGGCTCTGCCTTGGCCTGGTGCTGATGAACAAACTGAGAACTTTTGGATATGCCTTTCAAATAAAAAAAATAAAAAGATATTCTAGTTGCCCTCTCTAAACTAAAAAGGACTACACTCTTCCCTCCTCTGCGTTGGTTTGTGTTTTGGTTTTTCTTTGGGGGGGGGCCTGACCACTCTGCCTTATTTGTGGTGTTTTCGCGCCTTAGTGCTGGATGTTGCAAAAGGGAGTGGAAAATTGTGTTCACACTATCACTTTATAAAGCGCTTTTCCCATTTGATTACAGAAGTTTATTTGTCCTTGAATGTGTGCTGTTATGGTTGAATGCTGTTGCCTTTAGAACGATTGTTAGATTGGTACTTGCTTGGTCTGAGCGCTC]
consensusID : consensus_9293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[ATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGTGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGCCGCTCCGTCTCCTCCCTCGGCCTCGTGCGCGCCGACGACCTCCTCACGGTGCGGCCCCACGAGGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGTCGCCGTCGTCGACGACGCGCCACCTCGTCGGCGAGATCTCCCCCGCGCTCCTCGCGTCCTCGACGAGCGCGCCCAAGCTTATTCCCTTATGAGGTA]
[-] EMBL CB967325 [ATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGTGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGCCGCTCCGTCTCCTCCCTCGGCCTCGTGCGCGCCGACGACCTCCTCACGGTGCGGCCCCACGAGGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGTCGCCGTCGTCGACGACGCGCCACCTCGTCGGCGAGATCTCCCCCGCGCTCCTCGCGTCCTCGACGAGCGCGCCCAAGCTTATTCCCTTATGAGGTA]
consensusID : consensus_9293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[CTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTNTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGNAANGGCCTGCCGCGGCGACGCCAAGAAAGAGTTCTTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU089704 [CTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTNTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGNAANGGCCTGCCGCGGCGACGCCAAGAAAGAGTTCTTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9293#0 AAATCTTNGACTAGTATAATTACTGTGATTTTTTAATTAATCAATGTGGTGTTGTTCTTT 60
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 GCAGTGTGTTGGAGGCGCTTGATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTC 120
consensus_9293#1 ---------------------ATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTC 39
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 TCCGCTCCGGCGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCG-GCGGCGGCGGC 179
consensus_9293#1 TCCGCTCCGGTGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCG-GCGGCGGCGGC 98
consensus_9293#2 --------------CTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTNTGCAGCC-CGGC 45
* ** ** ***** *** ** * ****** ** ** ****
consensus_9293#0 GA--CTACTGCTGGT--TGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTC 235
consensus_9293#1 GA--CTACTGCTGGT--TGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTC 154
consensus_9293#2 GAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCC---AGCTACCTGTG 102
** *** *** *** * * *** **** ** * * * * ** * * *
consensus_9293#0 CCTCTTCTCCCATGTCGCCGGNNTTTCCNTCTCCTCCCTCGGCCTCGTGCGCGCCGACNA 295
consensus_9293#1 CCTCTTCTCCCATGTCGCCGGCCGCTCCGTCTCCTCCCTCGGCCTCGTGCGCGCCGACGA 214
consensus_9293#2 GGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCG---TCACGTTCGCCGACG- 158
* ** * * * ** ** * ** ** *** ** * *******
consensus_9293#0 CCTCCTCACGGTGCGGCCCCACGANGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGC 355
consensus_9293#1 CCTCCTCACGGTGCGGCCCCACGAGGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGC 274
consensus_9293#2 --TGCTCACGGT---GTTCCGCGAG-CAGCT------GCAGTGNAANGGC-CTGCCGCGG 205
* ******** * ** *** **** ** *** * * ******
consensus_9293#0 CATCGCCACGGAGACCGCGGTCGCCGTCGTCGACNACNGCGGCCACCTCGTCGGCGANAT 415
consensus_9293#1 CATCGCCACGGAGACCGCG-TCGCCGTCGTCGACGACGC--GCCACCTCGTCGGCGAGAT 331
consensus_9293#2 CGACGCCA-AGAAAGAGTTCTTTTTTTTTTTTCTGTTGC--GGCGATCGATCGATGGATC 262
* ***** ** * * * * * * * *** *
consensus_9293#0 CTCCCCCGCGCTCCTCGCGTTCTGCGACGAGACGGCGGCCGCGGCCATCGCGACGCTGTC 475
consensus_9293#1 CTCCCCCGCGCTCCTCGCGTCCT-CGACGAGC--GCGCCCAAGCTTATTCCCTTATGA-- 386
consensus_9293#2 GTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAAAAAAA 322
* * ** * * * * * * *
consensus_9293#0 GGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCGGAGCACATCCTTCG 535
consensus_9293#1 GGTA-------------------------------------------------------- 390
consensus_9293#2 AAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------- 347
consensus_9293#0 CGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAA 595
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 CGAGGCGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGA 655
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 GGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTC 715
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 GACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGC 775
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 GCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGC 835
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 CGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCC 895
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 GCTGCCGCGGCGACGCCAAGAAAGAGTTCTTTTTTTTTTTCTGTTGCGGCGATCGATCGA 955
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 TGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAA 1015
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 GCGTTTTGAACTCTGAACTCTGAAGTATTTGTCTCTGCCTTGGCCTGGTGCTGATGAACA 1075
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 AACTGAGACTTTTTGGATATGCCTTTCAAATAAAAAAAATAAAAAGATATTCTAGTTGCC 1135
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 CTCTCTAAACTAAAAAGGACTACACTCTTCCCTCCTCTGCGTTGGTTTGTGTTTTGGTTT 1195
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 TTCTTTGGGGGGGGGCCTGACCACTCTGCCTTATTTGTGGTGTTTTCGCGCCTTAGTGCT 1255
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 GGATGTTGCAAAAGGGAGTGGAAAATTGTGTTCACACTATCACTTTATAAAGCGCTTTTC 1315
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 CCATTTGATTACAGAAGTTTATTTGTCCTTGAATGTGTGCTGTTATGGTTGAATGCTGTT 1375
consensus_9293#1 ------------------------------------------------------------
consensus_9293#2 ------------------------------------------------------------
consensus_9293#0 GCCTTTAGAACGATTGTTAGATTGGTACTTGCTTGGTCTGAGCGCTC 1422
consensus_9293#1 -----------------------------------------------
consensus_9293#2 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||