These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 995 fasta sequence [GAGCAAAGAGAGACCCGTCGCTTTCCCGGCGGCAAAATGGATTGCCACCTTCTTCCTCCTCCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACCTAGCTAAGCGAGGCGAAAACCAGCAGAAGAGCCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGTCGCTGTCGGCGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGAGGGGCTCAAGACCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGATGTCCATGATAAAGGGTAGATACTTGAGATGCTGTGAAGAACTACTGGTCTACTACTGCAGCCAGTTTTCTTTATGGTGTTCGATTTCAGTTACGGAGTTATAAGAAGGTACGCATACGAGGAACCAAAAAAAAAAAAAAAA] [+] EMBL AK101359 [GAGCAAAGAGAGACCCGTCGCTTTCCCGGCGGCAAAATGGATTGCCACCTTCTTCCTCCTCCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACCTAGCTAAGCGAGGCGAAAACCAGCAGAAGAGCCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGTCGCTGTCGGCGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGAGGGGCTCAAGACCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTG ] [+] EMBL AK064307 [ GAAAACCAGCAGAAGAGCCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGTGACGACATCGAGTCGCTGTCGACGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGAGGGGCTCAAGACCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGA ] [-] EMBL CB640498 [ CCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGAGGGGCTCAAGACCAAGGTGCTCGTTTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTTTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGAT ] [+] EMBL AU070931 [ GGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATNCGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGATGTCCATGATAAAGGGTAGATACTTGAGATGCTGTGAAGAACTACTGGTCTACTACTGCAGCCAGTTTTCTTTATGGTGTTCGATTTCAGTTACGGAGTTATAAGAAGGTACGCATACGAGGAACCAAAAAAAAAAAAAAAA] consensusID : consensus_9306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [AGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTCCTGATGATGATCGCCGGCGGCGACGGCGACGGCGGCGGCGGCGGGTGGTGGTGCAGTCGCTGTCGACGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGANGCTGGCGGAGGTGGAAGGGGCTCAAGAACAAGGTGCTCGTCTGGGGCCAGGGTCACCGCCGTCAAGGCCGACGCCGCCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGNGCANCGTGACGCCTACGAAGGTTCGTCAAGGGGCGGCATCATTCGTCGAG] [+] EMBL AU082262 [AGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTCCTGATGATGATCGCCGGCGGCGACGGCGACGGCGGCGGCGGCGGGTGGTGGTGCAGTCGCTGTCGACGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGANGCTGGCGGAGGTGGAAGGGGCTCAAGAACAAGGTGCTCGTCTGGGGCCAGGGTCACCGCCGTCAAGGCCGACGCCGCCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGNGCANCGTGACGCCTACGAAGGTTCGTCAAGGGGCGGCATCATTCGTCGAG] consensusID : consensus_9306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [GGATTCGGNACGAGTTCCTCCTCCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACTANCTAAGCGAGGCGAAAACCAGCAGAAGAGCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAAGCCACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTCCTGATGATGATCGCCGGCGGCGACNGCNACNGCNGNNGCNGCNGGTGGTGGTTCANTCCCTGTCNACNAACGTCNGGGANGGGGCNAANTGGNTGGTNAACNNNCTNA] [+] EMBL AA752825 [GGATTCGGNACGAGTTCCTCCTCCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACTANCTAAGCGAGGCGAAAACCAGCAGAAGAGCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAAGCCACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTCCTGATGATGATCGCCGGCGGCGACNGCNACNGCNGNNGCNGCNGGTGGTGGTTCANTCCCTGTCNACNAACGTCNGGGANGGGGCNAANTGGNTGGTNAACNNNCTNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9306#0 GAGCAAAGAGAGACCCGTCGCTTTCCCGGCGGCAAAATGGATTGCCACCTTCTTCCTCCT 60 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 --------------------------------------GGATTCGGNACGAGTTCCTCCT 22 consensus_9306#0 CCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACCTAGCTAAGCGAGGCGA-AAACCAG 119 consensus_9306#1 ---------------AGCGAGAG--GAGAAAGATCAAAGATGGACGATATCATGAACAAG 43 consensus_9306#2 CCGCTTCCTGCTTTGATCCGGTCTCGACCAACGAC-TANCTAAGCGAGGCGA-AAACCAG 80 * * * ** ** * * * *** * *** ** consensus_9306#0 CAGAAGAGCCTCTCCTCTTCTTCGATCGTCG-CAAGAAGATACTACCAGAGAAGCAGATC 178 consensus_9306#1 CTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGAT-CTCCTCCGCCGGC-GACG 101 consensus_9306#2 CAGAAGAGCT-CTCCTCTTCTTCGATCGTCG-CAAGAAGATACTACCAGAGAAGCAGATC 138 * * * ** ** ** * * **** **** ** * ** ** consensus_9306#0 GCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGG 238 consensus_9306#1 ACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTC 161 consensus_9306#2 GCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGG 198 ** **** ** * * *** * * * * * consensus_9306#0 CTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGAC-----ATCGAGTCGC 293 consensus_9306#1 CTGATGATGATCGCCGGCGGCGACGGCGACGGCGGCGGCGGCGGGTGGTGGTGCAGTCGC 221 consensus_9306#2 CTCGGGCAGAAAGCCA-CAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTT 257 ** * ** *** * ** * * ** ***** ** ** consensus_9306#0 TGTCGGCGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGAT-- 351 consensus_9306#1 TGTCGACGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGAT-- 279 consensus_9306#2 TTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGA-TGTCCTGATGATGATCGCCG 316 * * * * * * * * ** ** **** * ** consensus_9306#0 GCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCG 411 consensus_9306#1 GCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCG 339 consensus_9306#2 GCGGCGACNGCNACNGCNGNNGCNGCNGGTGGTGGTTCANTCCCTGTCNACNAACGTCNG 376 ** * * ** * * * ** * ** * * * * * * * consensus_9306#0 GGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGC 471 consensus_9306#1 GGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGC 399 consensus_9306#2 GGANGGGGCNAANTGGNTGGTNAACNNNCTNA---------------------------- 408 *** * * * ** * * * * consensus_9306#0 GGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGG 531 consensus_9306#1 GGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGG 459 consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGA-GGGGCTCAAGACCAAGGTGCTCGTCT 590 consensus_9306#1 GACGCTGGAGAAGGGGANGCTGGCGGAGGTGGAAGGGGCTCAAGAACAAGGTGCTCGTCT 519 consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GGG-CCAGGGTCACCGCCGTCAGGGCCGACGCCGCC-AAGGTGCACTTCACCGCCGGCAT 648 consensus_9306#1 GGGGCCAGGGTCACCGCCGTCAAGGCCGACGCCGCCCAAGGTGCACTTCACCGCCGGCAT 579 consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 CAGGAAGTCGCGCAGCCGTGACGCCTACGAGG--TCGTCA-GGGGCGGCATCAT-CGTCG 704 consensus_9306#1 CAGGAAGTCGNGCANC-GTGACGCCTACGAAGGTTCGTCAAGGGGCGGCATCATTCGTCG 638 consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 AGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATAC 764 consensus_9306#1 AG---------------------------------------------------------- 640 consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATA 824 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 ACTGATTATTAGTAATTATAAAAGCTGGATGTCCATGATAAAGGGTAGATACTTGAGATG 884 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 CTGTGAAGAACTACTGGTCTACTACTGCAGCCAGTTTTCTTTATGGTGTTCGATTTCAGT 944 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 TACGGAGTTATAAGAAGGTACGCATACGAGGAACCAAAAAAAAAAAAAAAA 995 consensus_9306#1 --------------------------------------------------- consensus_9306#2 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||