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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 995 fasta sequence
[GAGCAAAGAGAGACCCGTCGCTTTCCCGGCGGCAAAATGGATTGCCACCTTCTTCCTCCTCCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACCTAGCTAAGCGAGGCGAAAACCAGCAGAAGAGCCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGTCGCTGTCGGCGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGAGGGGCTCAAGACCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGATGTCCATGATAAAGGGTAGATACTTGAGATGCTGTGAAGAACTACTGGTCTACTACTGCAGCCAGTTTTCTTTATGGTGTTCGATTTCAGTTACGGAGTTATAAGAAGGTACGCATACGAGGAACCAAAAAAAAAAAAAAAA]
[+] EMBL AK101359 [GAGCAAAGAGAGACCCGTCGCTTTCCCGGCGGCAAAATGGATTGCCACCTTCTTCCTCCTCCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACCTAGCTAAGCGAGGCGAAAACCAGCAGAAGAGCCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGTCGCTGTCGGCGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGAGGGGCTCAAGACCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTG ]
[+] EMBL AK064307 [ GAAAACCAGCAGAAGAGCCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGTGACGACATCGAGTCGCTGTCGACGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGAGGGGCTCAAGACCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGA ]
[-] EMBL CB640498 [ CCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGAGGGGCTCAAGACCAAGGTGCTCGTTTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTTTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGAT ]
[+] EMBL AU070931 [ GGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATNCGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGATGTCCATGATAAAGGGTAGATACTTGAGATGCTGTGAAGAACTACTGGTCTACTACTGCAGCCAGTTTTCTTTATGGTGTTCGATTTCAGTTACGGAGTTATAAGAAGGTACGCATACGAGGAACCAAAAAAAAAAAAAAAA]
consensusID : consensus_9306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[AGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTCCTGATGATGATCGCCGGCGGCGACGGCGACGGCGGCGGCGGCGGGTGGTGGTGCAGTCGCTGTCGACGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGANGCTGGCGGAGGTGGAAGGGGCTCAAGAACAAGGTGCTCGTCTGGGGCCAGGGTCACCGCCGTCAAGGCCGACGCCGCCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGNGCANCGTGACGCCTACGAAGGTTCGTCAAGGGGCGGCATCATTCGTCGAG]
[+] EMBL AU082262 [AGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTCCTGATGATGATCGCCGGCGGCGACGGCGACGGCGGCGGCGGCGGGTGGTGGTGCAGTCGCTGTCGACGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGATGCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGANGCTGGCGGAGGTGGAAGGGGCTCAAGAACAAGGTGCTCGTCTGGGGCCAGGGTCACCGCCGTCAAGGCCGACGCCGCCCAAGGTGCACTTCACCGCCGGCATCAGGAAGTCGNGCANCGTGACGCCTACGAAGGTTCGTCAAGGGGCGGCATCATTCGTCGAG]
consensusID : consensus_9306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[GGATTCGGNACGAGTTCCTCCTCCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACTANCTAAGCGAGGCGAAAACCAGCAGAAGAGCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAAGCCACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTCCTGATGATGATCGCCGGCGGCGACNGCNACNGCNGNNGCNGCNGGTGGTGGTTCANTCCCTGTCNACNAACGTCNGGGANGGGGCNAANTGGNTGGTNAACNNNCTNA]
[+] EMBL AA752825 [GGATTCGGNACGAGTTCCTCCTCCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACTANCTAAGCGAGGCGAAAACCAGCAGAAGAGCTCTCCTCTTCTTCGATCGTCGCAAGAAGATACTACCAGAGAAGCAGATCGCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGGCTCGGGCAGAAAGCCACAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTCCTGATGATGATCGCCGGCGGCGACNGCNACNGCNGNNGCNGCNGGTGGTGGTTCANTCCCTGTCNACNAACGTCNGGGANGGGGCNAANTGGNTGGTNAACNNNCTNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9306#0 GAGCAAAGAGAGACCCGTCGCTTTCCCGGCGGCAAAATGGATTGCCACCTTCTTCCTCCT 60
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 --------------------------------------GGATTCGGNACGAGTTCCTCCT 22
consensus_9306#0 CCGCTTCCTGCTTTGATCCGGTCTCGACCAACGACCTAGCTAAGCGAGGCGA-AAACCAG 119
consensus_9306#1 ---------------AGCGAGAG--GAGAAAGATCAAAGATGGACGATATCATGAACAAG 43
consensus_9306#2 CCGCTTCCTGCTTTGATCCGGTCTCGACCAACGAC-TANCTAAGCGAGGCGA-AAACCAG 80
* * * ** ** * * * *** * *** **
consensus_9306#0 CAGAAGAGCCTCTCCTCTTCTTCGATCGTCG-CAAGAAGATACTACCAGAGAAGCAGATC 178
consensus_9306#1 CTGGGGGGCTACTGGCTCGGGCAGAAGGCCAACAAGGAGAT-CTCCTCCGCCGGC-GACG 101
consensus_9306#2 CAGAAGAGCT-CTCCTCTTCTTCGATCGTCG-CAAGAAGATACTACCAGAGAAGCAGATC 138
* * * ** ** ** * * **** **** ** * ** **
consensus_9306#0 GCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGG 238
consensus_9306#1 ACATCGAGGTAAGGTTTTTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGATGTC 161
consensus_9306#2 GCAGCGAGAGGAGAAAGATCAAAGATGGACGATATCATGAACAAGCTGGGGGGCTACTGG 198
** **** ** * * *** * * * * *
consensus_9306#0 CTCGGGCAGAAGGCCAACAAGGAGATCTCCTCCGCCGGCGACGAC-----ATCGAGTCGC 293
consensus_9306#1 CTGATGATGATCGCCGGCGGCGACGGCGACGGCGGCGGCGGCGGGTGGTGGTGCAGTCGC 221
consensus_9306#2 CTCGGGCAGAAAGCCA-CAAGGAGATCTCCTCCGCCGGCGACGACATCGAGGTAAGGTTT 257
** * ** *** * ** * * ** ***** ** **
consensus_9306#0 TGTCGGCGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGAT-- 351
consensus_9306#1 TGTCGACGAGCGTCGGGGAGGGGGCAAAGTGGCTGGTGAACAAGCTGAAGGGGAAGAT-- 279
consensus_9306#2 TTTTTCCTTTCCTTCGATCGAATTCTTTTCTTGTGCCGA-TGTCCTGATGATGATCGCCG 316
* * * * * * * * ** ** **** * **
consensus_9306#0 GCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCG 411
consensus_9306#1 GCAGAAGCCGCTGCAGGAGCTGCTCCGGGAGCACGACCTGCCGGAGGGCTTGTTCCCGCG 339
consensus_9306#2 GCGGCGACNGCNACNGCNGNNGCNGCNGGTGGTGGTTCANTCCCTGTCNACNAACGTCNG 376
** * * ** * * * ** * ** * * * * * * *
consensus_9306#0 GGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGC 471
consensus_9306#1 GGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGC 399
consensus_9306#2 GGANGGGGCNAANTGGNTGGTNAACNNNCTNA---------------------------- 408
*** * * * ** * * * *
consensus_9306#0 GGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGG 531
consensus_9306#1 GGCGTGCGAGGTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGG 459
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GACGCTGGAGAAGGGGAGGCTGGCGGAGGTGGA-GGGGCTCAAGACCAAGGTGCTCGTCT 590
consensus_9306#1 GACGCTGGAGAAGGGGANGCTGGCGGAGGTGGAAGGGGCTCAAGAACAAGGTGCTCGTCT 519
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GGG-CCAGGGTCACCGCCGTCAGGGCCGACGCCGCC-AAGGTGCACTTCACCGCCGGCAT 648
consensus_9306#1 GGGGCCAGGGTCACCGCCGTCAAGGCCGACGCCGCCCAAGGTGCACTTCACCGCCGGCAT 579
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 CAGGAAGTCGCGCAGCCGTGACGCCTACGAGG--TCGTCA-GGGGCGGCATCAT-CGTCG 704
consensus_9306#1 CAGGAAGTCGNGCANC-GTGACGCCTACGAAGGTTCGTCAAGGGGCGGCATCATTCGTCG 638
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 AGGAGTTCTAGCATCGCGCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATAC 764
consensus_9306#1 AG---------------------------------------------------------- 640
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTACCGCGAATGACCTTTGTGATTATA 824
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 ACTGATTATTAGTAATTATAAAAGCTGGATGTCCATGATAAAGGGTAGATACTTGAGATG 884
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 CTGTGAAGAACTACTGGTCTACTACTGCAGCCAGTTTTCTTTATGGTGTTCGATTTCAGT 944
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 TACGGAGTTATAAGAAGGTACGCATACGAGGAACCAAAAAAAAAAAAAAAA 995
consensus_9306#1 ---------------------------------------------------
consensus_9306#2 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||