These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1395 fasta sequence [TTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAGCCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGCTC-TGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGAG-AGATTAGGTTTTCCTCAAGGAACCAGCATGGATTGGCAGGGAGCACCACCAAGCCCTAGTTCTCATGTTGTAAAAAAGATTCTGCGTTTGGATGTCCCAGTTGATTCTTATCCAAATTTCAATTTTGTGGGACGCATTCTAGGTCCTAGAGGTAACTCTCTAAAGCGGGTGGAAGCATCCACTGGCTGTCGTGTTTTCATTAGAGGGAAGGGTTCCATCAAAGATCCAGGGAAGGAGGACAAACTCCGTGGAAAGCCAGGCTACGAACATCTGAGTGACCCACTGCACATTTTGATAGAAGCTGAGTTCCCAGCCAGTATCATTGATGCAAGATTGAGACATGCACAGGAGGTTATAGAAGAACTGCTAAAACCAGTGGATGAATCACAGGATTTCTACAAAAGGCAACAGCTCAGGGAGCTGGCAATGCTAAACTCAACCCTGAGGGAGGACAGCCCCCATCCTGGGAGTGTCTCTCCATTCAGTAATGGCGGTATGAAACGCGCGAAAACGGGCCAGTAGAGAAG-CAACTCTACCACCACCCATTTGAGGTGGTATCCAGGTGCCTTATG-CCCTTAAAAAGGATGGCATTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTAGATGGAGTTTGGTATCAGTCAGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTCGATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTTTTCTTCCATTTACCCCCCATTTAGGTGTTTAATTCACCTTGTATTATATCCTTTCACATTTATGGAGCTGTGAAAAATAAAAGAAGGATGAAGGGTCATCCTCTTTCTTCTGCCTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK065405 [TTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAGCCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGCTC TGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGAG AGATTAGGTTTTCCTCAAGGAACCAGCATGGATTGGCAGGGAGCACCACCAAGCCCTAGTTCTCATGTTGTAAAAAAGATTCTGCGTTTGGATGTCCCAGTTGATTCTTATCCAAATTTCAATTTTGTGGGACGCATTCTAGGTCCTAGAGGTAACTCTCTAAAGCGGGTGGAAGCATCCACTGGCTGTCGTGTTTTCATTAGAGGGAAGGGTTCCATCAAAGATCCAGGGAAGGAGGACAAACTCCGTGGAAAGCCAGGCTACGAACATCTGAGTGACCCACTGCACATTTTGATAGAAGCTGAGTTCCCAGCCAGTATCATTGATGCAAGATTGAGACATGCACAGGAGGTTATAGAAGAACTGCTAAAACCAGTGGATGAATCACAGGATTTCTACAAAAGGCAACAGCTCAGGGAGCTGGCAATGCTAAACTCAACCCTGAGGGAGGACAGCCCCCATCCTGGGAGTGTCTCTCCATTCAGTAATGGCGGTATGAAACGCGCGAAAACGGGCCAGTAGAGAAG CAACTCTACCACCACCCATTTGAGGTGGTATCCAGGTGCCTTATG CCCTTAAAAAGGATGGCATTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTAGATGGAGTTTGGTATCAGTCAGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTCGATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTTTTCTTCCATTTACCCCCCATTTAGGTGTTTAATTCACCTTGTATTATATCCTTTCACATTTATGGAGCTGTGAAAAATAAAAGAAGGATGAAGGGTCATC ] [+] EMBL OSC107291 [ GAGCCCGCGGCGACGCCATGTCGNGGCTGTACAGCCGGNGGTTCTCGCCAGCNAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCANCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGNCAAACCCAAGATCTAATCGCTCTTGGAAATGGGTTTAGNCCTTGGAATNGGCTACACCAAGAGAAGATTAGGTTTTCCTCAAGG ACCAGCATGGATTTGCAGGG GCACCACC AGGCCTAGTTCTCATGTgt ] [+] EMBL AU100624 [ CGCGAAAACGGGCCAGTAGAGAAGCCAACTTTACCACCACCCATTTGAGGTGGTATCCAGGTGCCTTATGCCCCTTAAAAAGGATGGCATTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCANTAGATGGAGTTTGGTANCAGTCAGATTTTCGCCTTCAGGCAGGGGNAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTCGATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTTTTCTTCCATTTACCCCCTNTTTAGGTGTTTAATTCACCTTGTATTATATCCTTTCACATTTATGGAGCTGTGAAAAATAAAAGAAGGATGAAGGGTCATCCTCTTTCTTCTGCCTAAAAAAAAAAAAAAAAAA ] [+] EMBL AU172583 [ TTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTANATGGAGTTTGGTATCAGTCAGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTCGATCCNCCTTTGGTTTGTTGTAAGGTNTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTANANAAGGCCTGGGATGTGAGCCTTTTTTTTTNTTCCATTTACCCCCCATTTAGGTGTTTAATTCNCCTTGTATTANATCCTTTCACATTTATGGAGCTGTGAAAAATAAAANAAGGATGAAGGGTCATCCTCTTTNTTCTGCCTAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [CCATCTCCTCTCCTCGGCTTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAGCCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGCTCTGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGNNNNNNNNNNTNNTNCTCAAGNNNN] [+] EMBL CF196866 [CCATCTCCTCTCCTCGGCTTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAGCCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGCTCTGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGNNNNNNNNNNTNNTNCTCAAGNNNN] consensusID : consensus_9312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [AATTNGTTATGGANGGGTAACCCTCCCTATGCGGTGCTAGGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTGTTTCTTCCATTTACCCCCCANAAAGGTGTTNAATTCACCTTGTATTATATCCTTTCACATTTATGGNNCTGTGAAAGGNTAAAAGAAGGATGAAGGGTCATCCTCTTTCTTCTGAANTATAGTATTCAAAAAANNAANAANGAGCAAAACCTCGAACCGGATCT] [-] EMBL AA753239 [AATTNGTTATGGANGGGTAACCCTCCCTATGCGGTGCTAGGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTGTTTCTTCCATTTACCCCCCANAAAGGTGTTNAATTCACCTTGTATTATATCCTTTCACATTTATGGNNCTGTGAAAGGNTAAAAGAAGGATGAAGGGTCATCCTCTTTCTTCTGAANTATAGTATTCAAAAAANNAANAANGAGCAAAACCTCGAACCGGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9312#0 ------------------TTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAG 42 consensus_9312#1 CCATCTCCTCTCCTCGGCTTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAG 60 consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 CCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCT 102 consensus_9312#1 CCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCT 120 consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 CCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCG 162 consensus_9312#1 CCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCG 180 consensus_9312#2 -----------------------------------AATTNGT-TATGGANGGGTAACCCT 24 * * ** * *** * ** * * consensus_9312#0 CCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGA 222 consensus_9312#1 CCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGA 240 consensus_9312#2 CC--CTATGCGGTGCTAGGGTAGGTTATCTCCAT---GACAAGCTAGAGAAGGC--CTGG 77 ** ** * *** *** * * ** * * * * * ** * ** *** consensus_9312#0 GCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACA 282 consensus_9312#1 GCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACA 300 consensus_9312#2 GATGTGAGCCTTTTTTG-TTTCTTCCATTTACCCC--CCANAAAGGTGTTNAATTCACCT 134 * ** * * * * ** **** ** * *** * ** * * ** * consensus_9312#0 GGCATCGG----TTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGC 338 consensus_9312#1 GGCATCGG----TTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGC 356 consensus_9312#2 TGTATTATATCCTTTCACATTTATGGNNCTGTGAAAGGNTAAAAG--AAGGATGAAGGGT 192 * ** *** * * * * ** ** *** *** ** * consensus_9312#0 TCTGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGAGAGATTAGGTTTTCCTCAA 398 consensus_9312#1 TCTGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGNNNNNNNNNNTNNTNCTCAA 416 consensus_9312#2 CATCCTCTTTCTTCTGAANTATAGTATTCAAAAAANNAANAANGAGCAAAACCTCGAACC 252 * * * * * * ** * * ** * consensus_9312#0 GGAACCAGCATGGATTGGCAGGGAGCACCACCAAGCCCTAGTTCTCATGTTGTAAAAAAG 458 consensus_9312#1 GNNNN------------------------------------------------------- 421 consensus_9312#2 GGATCT------------------------------------------------------ 258 * consensus_9312#0 ATTCTGCGTTTGGATGTCCCAGTTGATTCTTATCCAAATTTCAATTTTGTGGGACGCATT 518 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 CTAGGTCCTAGAGGTAACTCTCTAAAGCGGGTGGAAGCATCCACTGGCTGTCGTGTTTTC 578 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 ATTAGAGGGAAGGGTTCCATCAAAGATCCAGGGAAGGAGGACAAACTCCGTGGAAAGCCA 638 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 GGCTACGAACATCTGAGTGACCCACTGCACATTTTGATAGAAGCTGAGTTCCCAGCCAGT 698 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 ATCATTGATGCAAGATTGAGACATGCACAGGAGGTTATAGAAGAACTGCTAAAACCAGTG 758 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 GATGAATCACAGGATTTCTACAAAAGGCAACAGCTCAGGGAGCTGGCAATGCTAAACTCA 818 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 ACCCTGAGGGAGGACAGCCCCCATCCTGGGAGTGTCTCTCCATTCAGTAATGGCGGTATG 878 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 AAACGCGCGAAAACGGGCCAGTAGAGAAGCAACTCTACCACCACCCATTTGAGGTGGTAT 938 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 CCAGGTGCCTTATGCCCTTAAAAAGGATGGCATTGGCACACCTTCAGGCATTGTTTGCCA 998 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 TGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTAGATGGAGTTTGGTATCAGTC 1058 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 AGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTC 1118 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 CGGTCGATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTG 1178 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 ACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTAGAGAAGGC 1238 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 CTGGGATGTGAGCCTTTTTTTTTCTTCCATTTACCCCCCATTTAGGTGTTTAATTCACCT 1298 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 TGTATTATATCCTTTCACATTTATGGAGCTGTGAAAAATAAAAGAAGGATGAAGGGTCAT 1358 consensus_9312#1 ------------------------------------------------------------ consensus_9312#2 ------------------------------------------------------------ consensus_9312#0 CCTCTTTCTTCTGCCTAAAAAAAAAAAAAAAAAAAAA 1395 consensus_9312#1 ------------------------------------- consensus_9312#2 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||