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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1395 fasta sequence
[TTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAGCCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGCTC-TGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGAG-AGATTAGGTTTTCCTCAAGGAACCAGCATGGATTGGCAGGGAGCACCACCAAGCCCTAGTTCTCATGTTGTAAAAAAGATTCTGCGTTTGGATGTCCCAGTTGATTCTTATCCAAATTTCAATTTTGTGGGACGCATTCTAGGTCCTAGAGGTAACTCTCTAAAGCGGGTGGAAGCATCCACTGGCTGTCGTGTTTTCATTAGAGGGAAGGGTTCCATCAAAGATCCAGGGAAGGAGGACAAACTCCGTGGAAAGCCAGGCTACGAACATCTGAGTGACCCACTGCACATTTTGATAGAAGCTGAGTTCCCAGCCAGTATCATTGATGCAAGATTGAGACATGCACAGGAGGTTATAGAAGAACTGCTAAAACCAGTGGATGAATCACAGGATTTCTACAAAAGGCAACAGCTCAGGGAGCTGGCAATGCTAAACTCAACCCTGAGGGAGGACAGCCCCCATCCTGGGAGTGTCTCTCCATTCAGTAATGGCGGTATGAAACGCGCGAAAACGGGCCAGTAGAGAAG-CAACTCTACCACCACCCATTTGAGGTGGTATCCAGGTGCCTTATG-CCCTTAAAAAGGATGGCATTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTAGATGGAGTTTGGTATCAGTCAGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTCGATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTTTTCTTCCATTTACCCCCCATTTAGGTGTTTAATTCACCTTGTATTATATCCTTTCACATTTATGGAGCTGTGAAAAATAAAAGAAGGATGAAGGGTCATCCTCTTTCTTCTGCCTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK065405 [TTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAGCCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGCTC TGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGAG AGATTAGGTTTTCCTCAAGGAACCAGCATGGATTGGCAGGGAGCACCACCAAGCCCTAGTTCTCATGTTGTAAAAAAGATTCTGCGTTTGGATGTCCCAGTTGATTCTTATCCAAATTTCAATTTTGTGGGACGCATTCTAGGTCCTAGAGGTAACTCTCTAAAGCGGGTGGAAGCATCCACTGGCTGTCGTGTTTTCATTAGAGGGAAGGGTTCCATCAAAGATCCAGGGAAGGAGGACAAACTCCGTGGAAAGCCAGGCTACGAACATCTGAGTGACCCACTGCACATTTTGATAGAAGCTGAGTTCCCAGCCAGTATCATTGATGCAAGATTGAGACATGCACAGGAGGTTATAGAAGAACTGCTAAAACCAGTGGATGAATCACAGGATTTCTACAAAAGGCAACAGCTCAGGGAGCTGGCAATGCTAAACTCAACCCTGAGGGAGGACAGCCCCCATCCTGGGAGTGTCTCTCCATTCAGTAATGGCGGTATGAAACGCGCGAAAACGGGCCAGTAGAGAAG CAACTCTACCACCACCCATTTGAGGTGGTATCCAGGTGCCTTATG CCCTTAAAAAGGATGGCATTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTAGATGGAGTTTGGTATCAGTCAGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTCGATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTTTTCTTCCATTTACCCCCCATTTAGGTGTTTAATTCACCTTGTATTATATCCTTTCACATTTATGGAGCTGTGAAAAATAAAAGAAGGATGAAGGGTCATC ]
[+] EMBL OSC107291 [ GAGCCCGCGGCGACGCCATGTCGNGGCTGTACAGCCGGNGGTTCTCGCCAGCNAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCANCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGNCAAACCCAAGATCTAATCGCTCTTGGAAATGGGTTTAGNCCTTGGAATNGGCTACACCAAGAGAAGATTAGGTTTTCCTCAAGG ACCAGCATGGATTTGCAGGG GCACCACC AGGCCTAGTTCTCATGTgt ]
[+] EMBL AU100624 [ CGCGAAAACGGGCCAGTAGAGAAGCCAACTTTACCACCACCCATTTGAGGTGGTATCCAGGTGCCTTATGCCCCTTAAAAAGGATGGCATTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCANTAGATGGAGTTTGGTANCAGTCAGATTTTCGCCTTCAGGCAGGGGNAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTCGATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTTTTCTTCCATTTACCCCCTNTTTAGGTGTTTAATTCACCTTGTATTATATCCTTTCACATTTATGGAGCTGTGAAAAATAAAAGAAGGATGAAGGGTCATCCTCTTTCTTCTGCCTAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU172583 [ TTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTANATGGAGTTTGGTATCAGTCAGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTCGATCCNCCTTTGGTTTGTTGTAAGGTNTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTANANAAGGCCTGGGATGTGAGCCTTTTTTTTTNTTCCATTTACCCCCCATTTAGGTGTTTAATTCNCCTTGTATTANATCCTTTCACATTTATGGAGCTGTGAAAAATAAAANAAGGATGAAGGGTCATCCTCTTTNTTCTGCCTAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[CCATCTCCTCTCCTCGGCTTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAGCCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGCTCTGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGNNNNNNNNNNTNNTNCTCAAGNNNN]
[+] EMBL CF196866 [CCATCTCCTCTCCTCGGCTTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAGCCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCTCCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCGCCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGAGCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACAGGCATCGGTTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGCTCTGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGNNNNNNNNNNTNNTNCTCAAGNNNN]
consensusID : consensus_9312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence
[AATTNGTTATGGANGGGTAACCCTCCCTATGCGGTGCTAGGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTGTTTCTTCCATTTACCCCCCANAAAGGTGTTNAATTCACCTTGTATTATATCCTTTCACATTTATGGNNCTGTGAAAGGNTAAAAGAAGGATGAAGGGTCATCCTCTTTCTTCTGAANTATAGTATTCAAAAAANNAANAANGAGCAAAACCTCGAACCGGATCT]
[-] EMBL AA753239 [AATTNGTTATGGANGGGTAACCCTCCCTATGCGGTGCTAGGGTAGGTTATCTCCATGACAAGCTAGAGAAGGCCTGGGATGTGAGCCTTTTTTGTTTCTTCCATTTACCCCCCANAAAGGTGTTNAATTCACCTTGTATTATATCCTTTCACATTTATGGNNCTGTGAAAGGNTAAAAGAAGGATGAAGGGTCATCCTCTTTCTTCTGAANTATAGTATTCAAAAAANNAANAANGAGCAAAACCTCGAACCGGATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9312#0 ------------------TTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAG 42
consensus_9312#1 CCATCTCCTCTCCTCGGCTTCACTTCTCGCCTCTCCTTGTTGGCACGGGCGGCGATTGAG 60
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 CCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCT 102
consensus_9312#1 CCCGCGGCGGCGCCATGTCGGGGCTGTACAGCCCGGGGTTCTCGCCAGCGAGGAACCTCT 120
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 CCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCG 162
consensus_9312#1 CCCCCCAGATTAGGAGCAACCCGACGGATGTTGATAGTCAGTATCTGGCCGAGTTGCTCG 180
consensus_9312#2 -----------------------------------AATTNGT-TATGGANGGGTAACCCT 24
* * ** * *** * ** * *
consensus_9312#0 CCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGA 222
consensus_9312#1 CCGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTGCCCATATGCAGCAAGCTGCTGA 240
consensus_9312#2 CC--CTATGCGGTGCTAGGGTAGGTTATCTCCAT---GACAAGCTAGAGAAGGC--CTGG 77
** ** * *** *** * * ** * * * * * ** * ** ***
consensus_9312#0 GCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACA 282
consensus_9312#1 GCCAAGAAATTATGCGGGTATCAAGCATTGTCCACAACCATGGATTTGGTGATTTTGACA 300
consensus_9312#2 GATGTGAGCCTTTTTTG-TTTCTTCCATTTACCCC--CCANAAAGGTGTTNAATTCACCT 134
* ** * * * * ** **** ** * *** * ** * * ** *
consensus_9312#0 GGCATCGG----TTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGC 338
consensus_9312#1 GGCATCGG----TTTAGAAGTCCTAGCCCTATGTCTTCGCCAAACCCAAGATCTAATCGC 356
consensus_9312#2 TGTATTATATCCTTTCACATTTATGGNNCTGTGAAAGGNTAAAAG--AAGGATGAAGGGT 192
* ** *** * * * * ** ** *** *** ** *
consensus_9312#0 TCTGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGAGAGATTAGGTTTTCCTCAA 398
consensus_9312#1 TCTGGAAATGGGTTTAGTCCTTGGAATGGGCTACACCAAGNNNNNNNNNNTNNTNCTCAA 416
consensus_9312#2 CATCCTCTTTCTTCTGAANTATAGTATTCAAAAAANNAANAANGAGCAAAACCTCGAACC 252
* * * * * * ** * * ** *
consensus_9312#0 GGAACCAGCATGGATTGGCAGGGAGCACCACCAAGCCCTAGTTCTCATGTTGTAAAAAAG 458
consensus_9312#1 GNNNN------------------------------------------------------- 421
consensus_9312#2 GGATCT------------------------------------------------------ 258
*
consensus_9312#0 ATTCTGCGTTTGGATGTCCCAGTTGATTCTTATCCAAATTTCAATTTTGTGGGACGCATT 518
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 CTAGGTCCTAGAGGTAACTCTCTAAAGCGGGTGGAAGCATCCACTGGCTGTCGTGTTTTC 578
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 ATTAGAGGGAAGGGTTCCATCAAAGATCCAGGGAAGGAGGACAAACTCCGTGGAAAGCCA 638
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 GGCTACGAACATCTGAGTGACCCACTGCACATTTTGATAGAAGCTGAGTTCCCAGCCAGT 698
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 ATCATTGATGCAAGATTGAGACATGCACAGGAGGTTATAGAAGAACTGCTAAAACCAGTG 758
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 GATGAATCACAGGATTTCTACAAAAGGCAACAGCTCAGGGAGCTGGCAATGCTAAACTCA 818
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 ACCCTGAGGGAGGACAGCCCCCATCCTGGGAGTGTCTCTCCATTCAGTAATGGCGGTATG 878
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 AAACGCGCGAAAACGGGCCAGTAGAGAAGCAACTCTACCACCACCCATTTGAGGTGGTAT 938
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 CCAGGTGCCTTATGCCCTTAAAAAGGATGGCATTGGCACACCTTCAGGCATTGTTTGCCA 998
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 TGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTAGATGGAGTTTGGTATCAGTC 1058
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 AGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTC 1118
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 CGGTCGATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTG 1178
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 ACTGTTAACCCTAGTATGTGGTGCTATGGTAGGTTATCTCCATGACAAGCTAGAGAAGGC 1238
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 CTGGGATGTGAGCCTTTTTTTTTCTTCCATTTACCCCCCATTTAGGTGTTTAATTCACCT 1298
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 TGTATTATATCCTTTCACATTTATGGAGCTGTGAAAAATAAAAGAAGGATGAAGGGTCAT 1358
consensus_9312#1 ------------------------------------------------------------
consensus_9312#2 ------------------------------------------------------------
consensus_9312#0 CCTCTTTCTTCTGCCTAAAAAAAAAAAAAAAAAAAAA 1395
consensus_9312#1 -------------------------------------
consensus_9312#2 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||