cluster # 9313

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Oryza sativa
cluster # 9313 cluster # 9313 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9313#0 length = 705 sequences # 5

consensus_9313#1 length = 477 sequences # 1

consensusID : consensus_9313#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 705
fasta sequence

                              [GCCACGCACCCACCACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTNCTNTTCTCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGCTCGGCCGCAGC-GGCGGCGGCGACGACGA-AGCCGGCCACACCGCCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA-GGCGAACATCAAGACGATCTCGTACGACGAGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACAAGGTGTGCAAGAAGCTGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGGGCGGCAAGGACGCCGCCGGCGACAAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACGCCGCCGGCGGTGACNAGGCGGAGAAGAAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCGCCGCCGCTGCCGCGAAGCCGGAGAAGAAAGGTCAGTTCGACGTCGACGACGCGCCGCCGCCGGNCGCGGCGACNGCGAAAGCCGGCNAGGTGCAGCCTTCCCGGNCGGCATGACACAGGNCGACCTCGN]

[+] EMBL C27063               [GCCACGCACCCACCACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTNCTNTTCTCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGCTCGGCCGNAGC GGC GCGGCGACGACGA AGCCGGCCACACCGCCGCCATTNTAATGGCAGACAAGATCTCCACGGTTGTNCTCAACGTTNACCTCGAATGCAATCGATGCTACAAGAAGNTCAGANGAGTCCTTTGCAGGATCCAAGATAAGGGNGAACA                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C28432               [             CACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTTCTCTTCTCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGCTCGGCCGCAGC GGCGNCGGCGACGACGA AGCCGGCCACACCGNCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA GGCGAACATCAAGACGATCTCGTACGACGAGAAGAACAATGCGGTGATGGTGTCGTGGCCGTTCGACGTCGACAAGGTGTGCAAGAAGCTGTGTTGCAAGGCCGGCA GATCATCAAGGACATGNAGGTCAAGGGCAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C27214               [                                                          TCTCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTTCGGCGACCTCCTCCTCCGGCGTCCA NTCGGCCGCAGC  GCGGNCGTATCGACGANAGCCGGCCACACNNCCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA GGCGAACATCAAGACGATCTCGTACGACGAGAAGAACAATGCGGTGATGGTNTCGGGGCCGTTCGACGCCGACAAGGTGTNCAAGAAGCTGTGCTGCAAGGCCGGCA                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AU181672             [                                                           tttTTAACNCNTCCTTCNTTTCNTTTTCCTTTTTCGGCNACCTCNTCNTCCGGCGTCCAGTTCGGCCGNAGCGGGCGGCGGCNACNACAA AGCCGGCCACACCGCCGCCNTTNTNATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCNATCGATGCTACAAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA GGCGAACATCAAGACGATCTCGTNCGACGAGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACAAGGTGTGCAAGAAGCTGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGGGCGGCAAGGACGCCGCCGGCGACAAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACGCCGCCGGCGGTG                                                                                                                                                                                                   ]
[+] EMBL CA756340             [                                                                                               GCGACCTCCTCCTCCGGCGTCCAGCTCGGCCGCAGC GGCGGCGGCGACGACGA AGCCGGCCACACCGCCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACNAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA GGCGAACATCAAGACGATCTCGTACGACGAGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACNAGGTGTGCAAGAAGCTGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGGGCGGCNAGGACGCCGCCGGCGACNAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACGCCGCCGGCGGTGACNAGGCGGAGAAGAAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCGCCGCCGCTGCCGCGAAGCCGGAGAAGAAAGGTCAGTTCGACGTCGACGACGCGCCGCCGCCGGNCGCGGCGACNGCGAAAGCCGGCNAGGTGCAGCCTTCCCGGNCGGCATGACACAGGNCGACCTCGN]




>consensus_9313#0
GCCACGCACCCACCACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTNCTNTTC
TCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGC
TCGGCCGCAGCGGCGGCGGCGACGACGAAGCCGGCCACACCGCCGCCATTCTCATGGCAG
ACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGA
TCAGAAGAGTCCTTTGCAGGATCCAAGATAAGGCGAACATCAAGACGATCTCGTACGACG
AGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACAAGGTGTGCAAGAAGC
TGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGG
GCGGCAAGGACGCCGCCGGCGACAAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGA
AGGCGGAGAAGAAGGACGCCGCCGGCGGTGACNAGGCGGAGAAGAAGGACGGTGGTGGCA
AGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCGCCGCCGCTGCCGCGAAGCCGGAGA
AGAAAGGTCAGTTCGACGTCGACGACGCGCCGCCGCCGGNCGCGGCGACNGCGAAAGCCG
GCNAGGTGCAGCCTTCCCGGNCGGCATGACACAGGNCGACCTCGN

consensusID : consensus_9313#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [TGACTTGATGNAATGNNANANAGANATTAGAGGTTCTTTNGCAGATCNAGATAGGGAATTTCAAGANATTTTGTAGANGAGAAGACAATGCGGTGATGTNTNGGGCCTTTAGACNCAGACAAGGTGTGCAAGAAGNTGTGTTGCAAGCCCGGCAGNATTNTCAAGGACATGCANTTCAAGGGCAAGGAGAACAAGGGCGGCAAGGACCCCGCCGGAGACAAGGNGAANCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACCCCGCCGGCGGTGACAAGGCGGAGAAGAAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCNCCGCCGCTGCCGCGAAGCCGGAGAAGAAGNTCAANTTAGACGTTTANGACGCGCCGCCGCCGGCCGCGGCGACGGCGAAGCCCGGCAAGGTGCAGCCNTTCCCGGCCGGCATGACACAGGCCGAC]

[+] EMBL AA753565             [TGACTTGATGNAATGNNANANAGANATTAGAGGTTCTTTNGCAGATCNAGATAGGGAATTTCAAGANATTTTGTAGANGAGAAGACAATGCGGTGATGTNTNGGGCCTTTAGACNCAGACAAGGTGTGCAAGAAGNTGTGTTGCAAGCCCGGCAGNATTNTCAAGGACATGCANTTCAAGGGCAAGGAGAACAAGGGCGGCAAGGACCCCGCCGGAGACAAGGNGAANCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACCCCGCCGGCGGTGACAAGGCGGAGAAGAAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCNCCGCCGCTGCCGCGAAGCCGGAGAAGAAGNTCAANTTAGACGTTTANGACGCGCCGCCGCCGGCCGCGGCGACGGCGAAGCCCGGCAAGGTGCAGCCNTTCCCGGCCGGCATGACACAGGCCGAC]




>consensus_9313#1
TGACTTGATGNAATGNNANANAGANATTAGAGGTTCTTTNGCAGATCNAGATAGGGAATT
TCAAGANATTTTGTAGANGAGAAGACAATGCGGTGATGTNTNGGGCCTTTAGACNCAGAC
AAGGTGTGCAAGAAGNTGTGTTGCAAGCCCGGCAGNATTNTCAAGGACATGCANTTCAAG
GGCAAGGAGAACAAGGGCGGCAAGGACCCCGCCGGAGACAAGGNGAANCCGGCGGAGAAG
GACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACCCCGCCGGCGGTGACAAGGCGGAGAAG
AAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCNCCGCCGCT
GCCGCGAAGCCGGAGAAGAAGNTCAANTTAGACGTTTANGACGCGCCGCCGCCGGCCGCG
GCGACGGCGAAGCCCGGCAAGGTGCAGCCNTTCCCGGCCGGCATGACACAGGCCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9313#0      GCCACGCACCCACCACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTNCTNTTC 60
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      TCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGC 120
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      TCGGCCGCAGCGGCGGCGGCGACGACGAAGCCGGCCACACCGCCGCCATTCTCATGGCAG 180
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      ACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGA 240
consensus_9313#1      ----------------------------------TGACTTGATGNAATGNNANANAGANA 26
                                                         ** *       ***  * *   * *

consensus_9313#0      TCAGAAGAGTCCTTTGCAGGATCCAAGATAAGGCGAACATCAAGACGATCTCGTACGACG 300
consensus_9313#1      TTAGAGGT-TCTTTNGCAGA--TCNAGATAGGG--AATTTCAAGAN-ATTTTGTA-GANG 79
                      * *** *  ** ** ****    * ***** **  **  ******  ** * *** ** *

consensus_9313#0      AGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACAAGGTGTGCAAGAAGC 360
consensus_9313#1      AGAAGA-CAATGCGGTGATGTN--TNGGGCCTTTAGACNCAGACAAGGTGTGCAAGAAGN 136
                      ****** *************      ***** ** *** * ****************** 

consensus_9313#0      TGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGG 420
consensus_9313#1      TGTGTTGCAAGCCCGGCAGNATTNTCAAGGACATGCANTTCAAGGGCAAGGAGAACAAGG 196
                      **** ****** ******* **  *************  *********************

consensus_9313#0      GCGGCAAGGACGCCGCCGGCGACAAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGA 480
consensus_9313#1      GCGGCAAGGACCCCGCCGGAGACAAGGNGAANCCGGCGGAGAAGGACGGCGGCGGCGGGA 256
                      *********** ******* ******* *** ****************************

consensus_9313#0      AGGCGGAGAAGAAGGACGCCGCCGGCGGTGACNAGGCGGAGAAGAAGGACGGTGGTGGCA 540
consensus_9313#1      AGGCGGAGAAGAAGGACCCCGCCGGCGGTGACAAGGCGGAGAAGAAGGACGGTGGTGGCA 316
                      ***************** ************** ***************************

consensus_9313#0      AGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCGCCGCCGCTGCCGCGAAGCCGGAGA 600
consensus_9313#1      AGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCNCCGCCGCTGCCGCGAAGCCGGAGA 376
                      *********************************** ************************

consensus_9313#0      AGAAAGGTCAGTTCGACGTCGACGACGCGCCGCCGCCGGNCGCGGCGACNGCGAAAGCCG 660
consensus_9313#1      AGAAGNTCAANTTAGACGTTTANGACGCGCCGCCGCCGGCCGCGGCGACGGCGAAGCCCG 436
                      ****     * ** *****  * **************** ********* *****  ***

consensus_9313#0      GCNAGGTGCAGCCTT-CCCGGNCGGCATGACACAGGNCGACCTCGN 705
consensus_9313#1      GCAAGGTGCAGCCNTTCCCGGCCGGCATGACACAGGCCGAC----- 477
                      ** ********** * ***** ************** ****