cluster # 9330

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Oryza sativa
cluster # 9330 cluster # 9330 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9330#0 length = 931 sequences # 5

consensus_9330#1 length = 354 sequences # 1

consensusID : consensus_9330#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 931
fasta sequence

                              [TTGGAAGAAGGGTTTCATTGCAATTTTGCGATCCCCACCTCTCTCTCTCTCGTCTATCGCTCTCATGGCCGAGCCGCCGTCGCAGTCGCCGGCGCAGACGCCGCCGCAGGCGGCGCAGCAGCAGCAGCAGGGGCCCGGGGAGAGCGCGCGCGACGACATGATGGCCTGCGTGGCGGCGCTGGAGGCGGCGCTGCTGCCCTGCCTCCCCGCGCGCGAGCTCCAGGCCGTCGACCGCT-CCCTCCAATCCTCCCACCAGATTGATGTTGAGAGGCACGCGA-GGGATTTCATGGAGGCTGCGAAGAAGCTCCAGTCTTACTTCAT-CAGCCTGCAGCGCGAGGACCGACCGTCG-ACAGAAGAAATGCTTCGAAAGGATATTGCTATAATGGAGGAAGAGCTGAAGACCAAGTCCGAGCTCATCGACAAACATAA-GAAGCTCATCGAAGGGTGGCAGAAA-GAGCTG-AAGGACCAGCT-GGGAAAGCATGTT-ACT-GAACT-CGAAAGAGTGTGACACCACTGTCTT-CCATGAAATGTCCCAGGCTCCTTCCGATGATCAACCTGAGTA--G-CCAGTGCTGGGCTATGCCTTGGAGATTTTGAGTACGCCAGCCAGGAAAAAAAAAACACCACAACAATGTTTTAGGATCTGACCAGTTTGCCGAAGACGAACAAATTGCGCTGTATTAATGTTCGTTGCTATGTTCGGTTTATCATAATATTATTGTTCGTAGTTTCTCGTGTGCTCTCCATCTCATCGTGTTAGGCATGCCTAACATGTTAAACTTTTAGATTTTTCGGAGCAACATCTTTTTCCCGATTATAGGAGTGTATGATAACATGTGTGTTCAATGGAATTGTCTAATTGCCTCAAAAAAAAATTTAGATGTTTCTTTCAACATATTAATGATTTAATGGTAATTGAATCCAAAAAAAAAAAAAA]

[+] EMBL AK070869             [TTGGAAGAAGGGTTTCATTGCAATTTTGCGATCCCCACCTCTCTCTCTCTCGTCTATCGCTCTCATGGCCGAGCCGCCGTCGCAGTCGCCGGCGCAGACGCCGCCGCAGGCGGCGCAGCAGCAGCAGCAGGGGCCCGGGGAGAGCGCGCGCGACGACATGATGGCCTGCGTGGCGGCGCTGGAGGCGGCGCTGCTGCCCTGCCTCCCCGCGCGCGAGCTCCAGGCCGTCGACCGCT CCCTCCAATCCTCCCACCAGATTGATGTTGAGAGGCACGCGA GGGATTTCATGGAGGCTGCGAAGAAGCTCCAGTCTTACTTCAT CAGCCTGCAGCGCGAGGACCGACCGTCG ACAGAAGAAATGCTTCGAAAGGATATTGCTATAATGGAGGAAGAGCTGAAGACCAAGTCCGAGCTCATCGACAAACATAA GAAGCTCATCGAAGGGTGGCAGAAA GAGCTG AAGGACCAGCT GGGAAAGCATGTT ACT GAACT CGAAAGAGTGTGACACCACTGTCTT CCATGAAATGTCCCAGGCTCCTTCCGATGATCAACCTGAGTA  G CCAGTGCTGGGCTATGCCTTGGAGATTTTGAGTACGCCAGCCAGGAAAAAAAAAACACCACAACAATGTTTTAGGATCTGACCAGTTTGCCGAAGACGAACAAATTGCGCTGTATTAATGTTCGTTGCTATGTTCGGTTTATCATAATATTATTGTTCGTAGTTTCTCGTGTGCTCTCCATCTCATCGTGTTAGGCATGCCTAACATGTTAAACTTTTAGATTTTTCGGAGCAACATCTTTTTCCCGATTATAGGAGTGTATGATAACATGTGTGTTCAATGGAATTGTCTAATTGC                                                                          ]
[+] EMBL AU071052             [                                                           CTCTCATGGCCGAGCCGCCGTCGCAGTCGCCGGCGCAGA GCCGCCGCAGG AANG  NCAGCAGCAGCAGGGGCCCGGGGAGAGCGCGCGCGACGACATGATGGCCTGCGTGGCGGCGCTGGAGGCGGCGCTGCTGCCCTGCCTCCCCGCGCGCGAGCTCCAGGCCGTCGACCGCT CCCTCCAATCCTCCCACCAGATTGATGTTGAGAGGCACGCGA GGGATTTCATGGAGGCTGCGAAGAAGCTCCAGTCTTACTTCAT CAGCCTGCAGCGCGAGGACCGACCGTCG ACAGAAGAAATGCTTCGAAAGGATATTGCTATAATGGAGGAAGAGCTGAAGACCAAGTCCGAGCTCATCGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU101704             [                                                                                                                                                                                                    CCNTGCCTCCCCGCGCGCGAGCTCCAGGCCGTCGACCGNTCCCCTCCAATCCTCCCACCAGATTGATGTTGAGAGGCACGCGAGGGGATTTCATGGAGGCTNCGAAG ANCTCCAGTCTTACTTCATCCAGCCTGCAGCGCGAGGACCGACCGTCGNCCAGAAGAAATGCTTCGAAAGGATATTGCTATNATGGAGGAAGAGCTGAAGACCAAGTCCGAGCTCATCGACAAACATAAGGAAGCTCATCGAAGGGTGGCAGAAAGGAGCTGAAAGGACCAGCTGGGGAAAGCATGTTAACTGGAACTCCGAAAGAGTGTGACACCACTNTCTTCCCATGAAATGTCCCAGGCTCCTTCCGATGATCAACCTGAGTA  GCCCAGTGCTGGGCTATGCCTTGGAGATTTTGAGTACGCCAGCCAGGAAAAAAAAAACACCACAACAATGTTTTAGGATCTGACCAGTTTGCCGAAGACGAACAAATTGCGCTGTATTAATGTTCGTTGCTATGTTCGGTTTATCATAATATTATTGTTCGTAGTTTCTCGTGTGCTCTCCATCTCATCGTGTTAGGCATGCCTAACATGTTAAACTTTTAGATTTTTCGGAGCAACATCTTTTTCCCGATTATAGGAGTGTATGATAACATGTGTGTTCAATGGAATTGTCTAATTGCCTCAAAAAAAAA                                                              ]
[+] EMBL AF522006             [                                                                                                                                                                                                                                                                                                                                                          CCGTCG ACAGAAGAAATGCTTCGAAAGGATATTGCTATAATGGAGGAAGAGCTGAAGACCAAGTCCGAGCTCATCGACAAACATAA GAAGCTCATCGAAGGGTGGCAGAAA GAGCTG AAGGACTAGCT GGGAAAGCATGTT ACT GAACT CGAAAGAGTGTGACACCACTGTCTT CCATGAAATGTCCCAGGCTCCTTCCGATGATCAACCTGAGTA  GCCCAGTGCTGGGCTATGCCTTGGAGATTTCGAGTACGCCAGCCAGGAAA                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU094359             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     n CGAAAGAGTGTGACACCACTGTCTT CCATGAAATGTCCCAGGCTCCTTCCGATGATCAACCTGAGTANCC CCAGTGCTGGGCTATGCCTTGGAGATTTTGAGTACGCCAGCCAGGAAAAAAAAAACACCACAACAATGTTTTAGGATCTGACCAGTTTGCCGAAGACGAACAAATTGCGCTGTATTAATGTTCGTTGCTATGTTCGGTTTATCATAATATTATTGTTCGTAGTTTCTCGTGTGCTCTCCATCTCATCGTGTTAGGCATGCCTAACATGTTAAACTTTTAGATTTTTCGGAGCAACATCTTTTTCCCGATTATAGGAGTGTATGATAACATGTGTGTTCAATGGAATTGTCTAATTGCCTCACTTGTCATTTTAGATGTTTCTTTCAACATATTAATGATTTAATGGTAATTGAATCCAAAAAAAAAAAAAA]




>consensus_9330#0
TTGGAAGAAGGGTTTCATTGCAATTTTGCGATCCCCACCTCTCTCTCTCTCGTCTATCGC
TCTCATGGCCGAGCCGCCGTCGCAGTCGCCGGCGCAGACGCCGCCGCAGGCGGCGCAGCA
GCAGCAGCAGGGGCCCGGGGAGAGCGCGCGCGACGACATGATGGCCTGCGTGGCGGCGCT
GGAGGCGGCGCTGCTGCCCTGCCTCCCCGCGCGCGAGCTCCAGGCCGTCGACCGCTCCCT
CCAATCCTCCCACCAGATTGATGTTGAGAGGCACGCGAGGGATTTCATGGAGGCTGCGAA
GAAGCTCCAGTCTTACTTCATCAGCCTGCAGCGCGAGGACCGACCGTCGACAGAAGAAAT
GCTTCGAAAGGATATTGCTATAATGGAGGAAGAGCTGAAGACCAAGTCCGAGCTCATCGA
CAAACATAAGAAGCTCATCGAAGGGTGGCAGAAAGAGCTGAAGGACCAGCTGGGAAAGCA
TGTTACTGAACTCGAAAGAGTGTGACACCACTGTCTTCCATGAAATGTCCCAGGCTCCTT
CCGATGATCAACCTGAGTAGCCAGTGCTGGGCTATGCCTTGGAGATTTTGAGTACGCCAG
CCAGGAAAAAAAAAACACCACAACAATGTTTTAGGATCTGACCAGTTTGCCGAAGACGAA
CAAATTGCGCTGTATTAATGTTCGTTGCTATGTTCGGTTTATCATAATATTATTGTTCGT
AGTTTCTCGTGTGCTCTCCATCTCATCGTGTTAGGCATGCCTAACATGTTAAACTTTTAG
ATTTTTCGGAGCAACATCTTTTTCCCGATTATAGGAGTGTATGATAACATGTGTGTTCAA
TGGAATTGTCTAATTGCCTCAAAAAAAAATTTAGATGTTTCTTTCAACATATTAATGATT
TAATGGTAATTGAATCCAAAAAAAAAAAAAA

consensusID : consensus_9330#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [CTCTCTCTCTCTCGTCTCTNGCTCTCATNGCCGAGCCGCCGTCGCANTCGCCNGCGCAGACNCCCGCATGCAGNCATGCAGCAGCAGGGNCCCGGGGAGAGCGCGCGCNNCGACATGATGGCCTGCGTNGCGGCGCTGGAGGCGCGTTNCTGCCCTGCCTCCCCGCGCGCGANTCCAGGCCGTCGACCGCTCCCTCCAATCCTCCCACCAGATTNATGTTGAGAGGCACGCGAGGGATTTCATGGAGGCTGCGAAGAAGCTCCAGTCTTACTTCATCAGNCTNCAGCGCGAGGACCNGACCGTCGACAGAAGGANAATTCTTTCGAAAGGATATTTGCTATAATTGAGGGAAGA]

[+] EMBL OSC174               [CTCTCTCTCTCTCGTCTCTNGCTCTCATNGCCGAGCCGCCGTCGCANTCGCCNGCGCAGACNCCCGCATGCAGNCATGCAGCAGCAGGGNCCCGGGGAGAGCGCGCGCNNCGACATGATGGCCTGCGTNGCGGCGCTGGAGGCGCGTTNCTGCCCTGCCTCCCCGCGCGCGANTCCAGGCCGTCGACCGCTCCCTCCAATCCTCCCACCAGATTNATGTTGAGAGGCACGCGAGGGATTTCATGGAGGCTGCGAAGAAGCTCCAGTCTTACTTCATCAGNCTNCAGCGCGAGGACCNGACCGTCGACAGAAGGANAATTCTTTCGAAAGGATATTTGCTATAATTGAGGGAAGA]




>consensus_9330#1
CTCTCTCTCTCTCGTCTCTNGCTCTCATNGCCGAGCCGCCGTCGCANTCGCCNGCGCAGA
CNCCCGCATGCAGNCATGCAGCAGCAGGGNCCCGGGGAGAGCGCGCGCNNCGACATGATG
GCCTGCGTNGCGGCGCTGGAGGCGCGTTNCTGCCCTGCCTCCCCGCGCGCGANTCCAGGC
CGTCGACCGCTCCCTCCAATCCTCCCACCAGATTNATGTTGAGAGGCACGCGAGGGATTT
CATGGAGGCTGCGAAGAAGCTCCAGTCTTACTTCATCAGNCTNCAGCGCGAGGACCNGAC
CGTCGACAGAAGGANAATTCTTTCGAAAGGATATTTGCTATAATTGAGGGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9330#0      TTGGAAGAAGGGTTTCATTGCAATTTTGCGATCCCCACCTCTCTCTCTCTCGTCTATCGC 60
consensus_9330#1      --------------------------------------CTCTCTCTCTCTCGTCTCTNGC 22
                                                            ***************** * **

consensus_9330#0      TCTCATGGCCGAGCCGCCGTCGCAGTCGCCGGCGCAGACGCCGCCGCAGGCGGCGCAGCA 120
consensus_9330#1      TCTCATNGCCGAGCCGCCGTCGCANTCGCCNGCGCAGACNCC--CGCATGCAGN-CA--T 77
                      ****** ***************** ***** ******** **  **** ** *  **   

consensus_9330#0      GCAGCAGCAGGGGCCCGGGGAGAGCGCGCGCGACGACATGATGGCCTGCGTGGCGGCGCT 180
consensus_9330#1      GCAGCAGCAGGGNCCCGGGGAGAGCGCGCGCNNCGACATGATGGCCTGCGTNGCGGCGCT 137
                      ************ ******************  ****************** ********

consensus_9330#0      GGAGGCGGCGCTGCTGCCCTGCCTCCCCGCGCGCGAGCTCCAGGCCGTCGACCGCTCCCT 240
consensus_9330#1      GGAGGCG-CGTTNCTGCCCTGCCTCCCCGCGCGCGAN-TCCAGGCCGTCGACCGCTCCCT 195
                      ******* ** * ***********************  **********************

consensus_9330#0      CCAATCCTCCCACCAGATTGATGTTGAGAGGCACGCGAGGGATTTCATGGAGGCTGCGAA 300
consensus_9330#1      CCAATCCTCCCACCAGATTNATGTTGAGAGGCACGCGAGGGATTTCATGGAGGCTGCGAA 255
                      ******************* ****************************************

consensus_9330#0      GAAGCTCCAGTCTTACTTCATCAGCCTGCAGCGCGAGGACCG-ACCGTCGACAGAAGAAA 359
consensus_9330#1      GAAGCTCCAGTCTTACTTCATCAGNCTNCAGCGCGAGGACCNGACCGTCGACAGAAGGAN 315
                      ************************ ** *************  ************** * 

consensus_9330#0      ---TGCTTCGAAAGGATATT-GCTATAATGGAGGAAGAGCTGAAGACCAAGTCCGAGCTC 415
consensus_9330#1      AATTCTTTCGAAAGGATATTTGCTATAATTGAGGGAAGA--------------------- 354
                         *  ************** ******** **** *                        

consensus_9330#0      ATCGACAAACATAAGAAGCTCATCGAAGGGTGGCAGAAAGAGCTGAAGGACCAGCTGGGA 475
consensus_9330#1      ------------------------------------------------------------
                                                                                  

consensus_9330#0      AAGCATGTTACTGAACTCGAAAGAGTGTGACACCACTGTCTTCCATGAAATGTCCCAGGC 535
consensus_9330#1      ------------------------------------------------------------
                                                                                  

consensus_9330#0      TCCTTCCGATGATCAACCTGAGTAGCCAGTGCTGGGCTATGCCTTGGAGATTTTGAGTAC 595
consensus_9330#1      ------------------------------------------------------------
                                                                                  

consensus_9330#0      GCCAGCCAGGAAAAAAAAAACACCACAACAATGTTTTAGGATCTGACCAGTTTGCCGAAG 655
consensus_9330#1      ------------------------------------------------------------
                                                                                  

consensus_9330#0      ACGAACAAATTGCGCTGTATTAATGTTCGTTGCTATGTTCGGTTTATCATAATATTATTG 715
consensus_9330#1      ------------------------------------------------------------
                                                                                  

consensus_9330#0      TTCGTAGTTTCTCGTGTGCTCTCCATCTCATCGTGTTAGGCATGCCTAACATGTTAAACT 775
consensus_9330#1      ------------------------------------------------------------
                                                                                  

consensus_9330#0      TTTAGATTTTTCGGAGCAACATCTTTTTCCCGATTATAGGAGTGTATGATAACATGTGTG 835
consensus_9330#1      ------------------------------------------------------------
                                                                                  

consensus_9330#0      TTCAATGGAATTGTCTAATTGCCTCAAAAAAAAATTTAGATGTTTCTTTCAACATATTAA 895
consensus_9330#1      ------------------------------------------------------------
                                                                                  

consensus_9330#0      TGATTTAATGGTAATTGAATCCAAAAAAAAAAAAAA 931
consensus_9330#1      ------------------------------------