cluster # 9337

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Oryza sativa
cluster # 9337 cluster # 9337 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9337#0 length = 907 sequences # 3
consensus_9337#1 length = 324 sequences # 1

consensus_9337#2 length = 250 sequences # 1
consensus_9337#3 length = 249 sequences # 1

consensusID : consensus_9337#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 907
fasta sequence

                              [TTGTCACACATATATCCTTTTATACTACTCCTCTGTCCCTCCTCTCCCTAACCAATATATCTCCACCCCTCTTCTCCCCTCACTCACCATTTGCTCTCTTCTCTCTTCTCTCTTCTCCACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGGAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCGGCCCGTCCCGGCAGCACAACGCCATTG-GAGCCGAGGACCAAGGCAACCCATGAATTCGATACATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTA-GCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAACACTGGGTGCTCTG]

[+] EMBL AK101654             [TTGTCACACATATATCCTTTTATACTACTCCTCTGTCCCTCCTCTCCCTAACCAATATATCTCCACCCCTCTTCTCCCCTCACTCACCATTTGCTCTCTTCTCTCTTCTCTCTTCTCCACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGGAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCGGCCCGTCCCGGCAGCACAACGCCATTG GAGCCGAGGACCAAGGCAACCCATGAATTCGATACATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTA GCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAACACTGGGTGCTCTG]
[+] EMBL AU029338             [                                                                                                          TCTCTCTTCTCCACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGGAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGNGCCGCCGTCCGGCCCGTCCCGGCAGCACAACGCCATTGNGAGCCGAGGACCAAGGCAACCCATGAATTCGATANATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTAGAGTTGCATAGAT TCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTANGCAGTATATACAnt                                                                                                                                                                                         ]
[+] EMBL CB678944             [                                                                                                                      ACATCCCCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGGAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCGGCCCGTCCCGGCAGCACAACGCCATTG GAGCCGAGGACCAAGGCAACCCATGAATTCGATACATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTA GCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCT                                        ]




>consensus_9337#0
TTGTCACACATATATCCTTTTATACTACTCCTCTGTCCCTCCTCTCCCTAACCAATATAT
CTCCACCCCTCTTCTCCCCTCACTCACCATTTGCTCTCTTCTCTCTTCTCTCTTCTCCAC
ATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATC
TTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTG
GTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGG
AGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAG
GCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGA
GGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCGGCCCG
TCCCGGCAGCACAACGCCATTGGAGCCGAGGACCAAGGCAACCCATGAATTCGATACATG
TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGC
TAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACA
CTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGA
TGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAA
ATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAACACTGGG
TGCTCTG

consensusID : consensus_9337#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [GAGAGAGAGAGATCAGAGTTNCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCNCATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029339             [GAGAGAGAGAGATCAGAGTTNCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCNCATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9337#1
GAGAGAGAGAGATCAGAGTTNCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAAT
TGTAGCTAGCACTAGCAGTAGCNCATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTA
TATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGAT
CAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTC
TGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9337#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTACAAAAAAAAAAA]

[+] EMBL AU092676             [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTACAAAAAAAAAAA]




>consensus_9337#2
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATT
AATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGT
AGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCG
CAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTACA
AAAAAAAAAA

consensusID : consensus_9337#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [ACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCC]

[+] EMBL C27777               [ACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCC]




>consensus_9337#3
ACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCA
TCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGC
TGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAG
GCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGT
TCTTGCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9337#0      TTGTCACACATATATCCTTTTATACTACTCCTCTGTCCCTCCTCTCCCTAACCAATATAT 60
consensus_9337#3      ------------------------------------------------------------
consensus_9337#1      ------------------------------------------------------------
consensus_9337#2      ------------------------------------------------------------
                                                                                  

consensus_9337#0      CTCCACCCCTCTTCTCCCCTCACTCACCATTTGCTCTCTTCTCTCTTCTCTCTTCTCCAC 120
consensus_9337#3      ----------------------------------------------------------AC 2
consensus_9337#1      ------------------------------------------------------------
consensus_9337#2      -----------------------------------------------------------G 1
                                                                                  

consensus_9337#0      ATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATC 180
consensus_9337#3      ATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATC 62
consensus_9337#1      -------------------GAGAGAGAGAGATCAGAGTTN-CATAGATATCATCGAAATT 40
consensus_9337#2      AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTG-CATAGATATCATCGAAATT 60
                                            **  ** * ***   *   ***    ******   ** 

consensus_9337#0      T-TCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCT 239
consensus_9337#3      T-TCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCT 121
consensus_9337#1      AATCTTCTTGGTTAATTAATTGTAGCTAGC--------ACTAGCAGTAGCNCATGTAG-T 91
consensus_9337#2      AATCTTCTTGGTTAATTAATTGTAGCTAGC--------ACTAGCAGTAGCACATGTAG-T 111
                        *******  *    *  ** *  ** **         *****   * *   * *** *

consensus_9337#0      GGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAG 299
consensus_9337#3      GGT--------------------------------------------------------- 124
consensus_9337#1      AGT--------------------------------------------------------- 94
consensus_9337#2      AGT--------------------------------------------------------- 114
                       **                                                         

consensus_9337#0      GAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGC-TGC 358
consensus_9337#3      ------------------------------GGTAGCGGCGCTGCTGCTGCTGCTGC-TGC 153
consensus_9337#1      ------------------------------AGTAGTAGTAC-GTAGCAGTAGCAGTATAT 123
consensus_9337#2      ------------------------------AGTAGTAGTAC-GTAGCAGTAGCAGTATAT 143
                                                     ****  *  * *  ** *  ** *  *  

consensus_9337#0      AGGCGTCG--AGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGA 416
consensus_9337#3      AGGCGTCG--AGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGA 211
consensus_9337#1      ACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAA 183
consensus_9337#2      ACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAA 203
                      *  * ***  *      **  ** *      * ** ** * *  **   **   * *  *

consensus_9337#0      GAGAGGCGT-CTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCG 475
consensus_9337#3      GAGAGGCGT-CTCCAACAACTTCTTCGGGTTCTTGCCCC--------------------- 249
consensus_9337#1      GGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGT 243
consensus_9337#2      GGATGATGTACATGAAGAAGCTTTTTTTTCTTTTACAAAAAAAAAAA------------- 250
                      *   *  ** *   ** **  * **     * ** *                        

consensus_9337#0      GCCCGTCCCGGCAGCACAACGCCATTGGAGCCGAGGACCAAGGCAACCCATGAATTCGAT 535
consensus_9337#3      ------------------------------------------------------------
consensus_9337#1      CAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAAAAAA 303
consensus_9337#2      ------------------------------------------------------------
                                                                                  

consensus_9337#0      ACATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 595
consensus_9337#3      ------------------------------------------------------------
consensus_9337#1      AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 324
consensus_9337#2      ------------------------------------------------------------
                                                                                  

consensus_9337#0      AGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATT 655
consensus_9337#3      ------------------------------------------------------------
consensus_9337#1      ------------------------------------------------------------
consensus_9337#2      ------------------------------------------------------------
                                                                                  

consensus_9337#0      GTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTAT 715
consensus_9337#3      ------------------------------------------------------------
consensus_9337#1      ------------------------------------------------------------
consensus_9337#2      ------------------------------------------------------------
                                                                                  

consensus_9337#0      ATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATC 775
consensus_9337#3      ------------------------------------------------------------
consensus_9337#1      ------------------------------------------------------------
consensus_9337#2      ------------------------------------------------------------
                                                                                  

consensus_9337#0      AAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCT 835
consensus_9337#3      ------------------------------------------------------------
consensus_9337#1      ------------------------------------------------------------
consensus_9337#2      ------------------------------------------------------------
                                                                                  

consensus_9337#0      GTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAACA 895
consensus_9337#3      ------------------------------------------------------------
consensus_9337#1      ------------------------------------------------------------
consensus_9337#2      ------------------------------------------------------------
                                                                                  

consensus_9337#0      CTGGGTGCTCTG 907
consensus_9337#3      ------------
consensus_9337#1      ------------
consensus_9337#2      ------------