cluster # 9340

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Oryza sativa
cluster # 9340 cluster # 9340 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9340#0 length = 1239 sequences # 4

consensus_9340#1 length = 794 sequences # 1
consensus_9340#2 length = 236 sequences # 1

consensusID : consensus_9340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1239
fasta sequence

                              [CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG-AAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG-AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA-CTTCTAGTTTCAAATGATTCTT-GGAATGCCTGTGCACCATTTT-GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCACG]

[+] EMBL AK067584             [CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG AAGATGAAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA CTTCTAGTTTCAAATGATTCTT GGAATGCCTGTGCACCATTTT GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCACG]
[+] EMBL AU029510             [                   TCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGA GTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGC GAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK060165             [                                                                                                                          CAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG AAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA CTTCTAGTTTCAAATGATTCTT GGAATGCCTGTGCACCATTTT GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATG                                                ]
[+] EMBL CA767314             [                                                                                                                                                                                                                                         CAAGTTGCTTCTCGACATCGGGTGTGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCNTCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAGCCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGNAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGANAA GCGANGACGGGAAGGGNCCCGCGGACACCAAATACACAGGGCGGGAGCGGAAAAGCTACCTTCTAGNTTCAAAAGATTCTTNGGAANGCCTGNGCACATTTTTGGCCGGTTGGCATACTAGNAGCTCATTATT                                                                                                                                                                                                             ]




>consensus_9340#0
CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGG
AGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTC
TACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCG
AGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTG
CTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCAT
CACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCG
GAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATT
GATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCAC
AACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGA
GCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACT
GCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAA
GCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCG
AAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGT
GGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGG
CAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTG
AGAAGGCGAGGACGGGAGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGC
TACTTCTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACT
AGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCT
CTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGA
CAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATGTTTGTTGCT
TAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCACG

consensusID : consensus_9340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence

                              [TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTTTGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACAGTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTTTGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACAGGCCGGAGCCGAAAGCTAC]

[+] EMBL BE040378             [TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTTTGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACAGTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTTTGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACAGGCCGGAGCCGAAAGCTAC]




>consensus_9340#1
TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTTTGCTT
CGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACAGTTGA
CAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTC
TGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGC
GGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTG
ACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGAT
GCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTG
AAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGC
CTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAA
ATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGA
GCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATA
GGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTTTGACA
AAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACAGGCCG
GAGCCGAAAGCTAC

consensusID : consensus_9340#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [AAAAGCTACTTTTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTTTACACCAAAGAGCCGCTCATGTTCTGTAACCTTCTAGCAATTTTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGAAAAAAAAAAAAAAA]

[-] EMBL CA763620             [AAAAGCTACTTTTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTTTACACCAAAGAGCCGCTCATGTTCTGTAACCTTCTAGCAATTTTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGAAAAAAAAAAAAAAA]




>consensus_9340#2
AAAAGCTACTTTTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGT
CATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATG
CGCTCTCTCTCTTTACACCAAAGAGCCGCTCATGTTCTGTAACCTTCTAGCAATTTTGAG
TTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9340#0      CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGG 60
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      AGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTC 120
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      TACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCG 180
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      AGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTG 240
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      CTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCAT 300
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      CACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCG 360
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATT 420
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCAC 480
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      AACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGA 540
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACT 600
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAA 660
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCG 720
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      AAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGT 780
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGG 840
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      -----TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTT 55
                                                                                  

consensus_9340#0      CAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTG 900
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      TGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACA 115
                                                                                  

consensus_9340#0      AGAAGGCGAGGACGGGAGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGC 960
consensus_9340#2      ------------------------------------------------------AAAAGC 6
consensus_9340#1      GTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGT 175
                                                                              * * 

consensus_9340#0      TACTTCT-AGTTTCAAATGATTCTTGGAATGCCTGT-GCACCATTTTGCCGTTTGTCATA 1018
consensus_9340#2      TACTTTT-AGTTTCAAATGATTCTTGGAATGCCTGT-GCACCATTTTGCCGTTTGTCATA 64
consensus_9340#1      TGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGG 235
                      * **    **  * **  *     **   * * * * ***    *  ***     * *  

consensus_9340#0      CTAGTAGCTCA---TTATTAGTAGTACGAGAAAGGTT----CAGTTGAAGAGTTGGGTGA 1071
consensus_9340#2      CTAGTAGCTCA---TTATTAGTAGTACGAGAAAGGTT----CAGTTGAAGAGTTGGGTGA 117
consensus_9340#1      CTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAA 295
                      ** *  **      *****  * *  * *  *   **    ***** *   ***  *  *

consensus_9340#0      ATGCGCTCTCTCTCTCTACA-CCATAGA--GCCGTTCATG-----TTCTGTAACCTTCTA 1123
consensus_9340#2      ATGCGCTCTCTCTCTTTACA-CCAAAGA--GCCGCTCATG-----TTCTGTAACCTTCTA 169
consensus_9340#1      TGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATA 355
                          *     ***    *** **  ***  ** * * * *      * ** * * ** **

consensus_9340#0      GCAATTCTGAGTTTTGA---CAAATGCTGT---GCAAATCTATGTCCTACTTTTGAAGGA 1177
consensus_9340#2      GCAATTTTGAGTTTTGA---CAAATGCTGT---GCAAATCTATGTCCTACTTTTGAAGAA 223
consensus_9340#1      TAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCA 415
                         **    **    *    ***  ** **   **** * ****       * ***** *

consensus_9340#0      TCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCA 1237
consensus_9340#2      AAAAAAAAAAAAA----------------------------------------------- 236
consensus_9340#1      GAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGA 475
                            *                                                     

consensus_9340#0      CG---------------------------------------------------------- 1239
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      CTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTC 535
                                                                                  

consensus_9340#0      ------------------------------------------------------------
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      TCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGA 595
                                                                                  

consensus_9340#0      ------------------------------------------------------------
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      TGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAG 655
                                                                                  

consensus_9340#0      ------------------------------------------------------------
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      AAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTT 715
                                                                                  

consensus_9340#0      ------------------------------------------------------------
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      TGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACA 775
                                                                                  

consensus_9340#0      -------------------
consensus_9340#2      -------------------
consensus_9340#1      GGCCGGAGCCGAAAGCTAC 794