cluster # 9344

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Oryza sativa
cluster # 9344 cluster # 9344 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9344#0 length = 2617 sequences # 2

consensus_9344#1 length = 1833 sequences # 4

consensusID : consensus_9344#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2617
fasta sequence

                              [AAATCGGAATTTGAAGTTTGGAGTCACCGCCGCCGTTGAGGTCCGTCGTCTCGTCCGAGTCCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGGGACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTNCAGAACAAGAAGGTGTGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGNCGGCCTTCG-CAAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGNATCCGGGCCTNCTTCGCCCTCAACTGCACCCTCCTCTTCGTCACCGATGGGGCTATACCTTCACTTAAGTTGGCCACTTACCGCCGTCGCCTCGGATCCATTTCTCATGTCTCTGCCACTCACTCTCTACTTCTGCACTGCAAACAACCTTTTGCTTAATTACTTGTACTACATTGCTTGCTTCCCCTGTTGTTTAGGCTGCTAAAGAATCAGATCAGCCCAATTCACACCCATCCATTTCACTGCGTCGCAACAAGGGTTCCGAGTTCTCCTGCATGATTAAAGAGGCCAAGCGTCTCGGCATGGCCCTCGGCATCCCTTGCTTGGACGGATTGGAGGAGGCTGAAGCACAGTGTGCATCCCTAGATCTAGAGTCACTCTGTGATGGCTGTTTCACTTCAGACTCGGATGCTTTTCTTTTTGGCGCTAGGACTGTTTATAGAGATGTTTTCATAGGGGAGGGTGGCTATGTCATTTGCTATGAAATGGAAGACATAGAGAAAACTCTTGGCTTTGGCAGGAACTCGCTGGTAAGTTGCAATGAATTTGTTCTGCCCGAGTTTCAGCTTATGGGATCTCTTCTGAACAAATGTTTTGACTGCTTGTGACATATCACAAAGATGTAAAATAAACTTACTTAAATATGCCCCTTATGCTCCTAGAAAGATCACTTAGACTTTTGTCAGTTAATGGCTTAACACGGTCAAAGCAACTAATAGATAAAGACCTTTAAGAGTAGACTGCACTGCAGGCACAACAGCTTAGTAAGTGAATGCAATGTGCTGATTTAAAACAAGAACTTGCAAGTTGTATGCATAGAGCAACACCATTTTCTCAACTCTGATATCACAAGAAAATGTCTCAGCGCACTCTTAAAAATCCTTTGGGTAATTATCATGTATTAGTCAGAGATTACGGGATGTTGCATGTAATTGCTGATGACTTGTATGACAATATGATGCAATAACAATATTACATCTCCCACCAATGACTTTTTTTTGGGCTTCTGATTCTCAGGATTTTTTTTTTGTGTGATAATGCGTAAATTCTTATTGTCCTGACTTGACAACCTTTCCAGATATCACTTGCAGTGCTCCTTGGTAGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCAGTAAGTACAAAAAAAACTGTCATTTTCATTGTCTTAGTATAACATGCATCTGTTCTTATATGTTTCTATATGAAATCTGACACTCGACGACAAGATGGGAATCATGGAGCTTATCATTATATTTGTAATGGTGCTCTTTTAATGTTCCAGGAAACAGCATGCCGGCTTGTTAAGTCTGTAGGCGACAATTTAATTCTTGATCAGATTTTGTCTAATGGAGTTAAAGCTACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAAGGTGGACGACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGATGGTCAATTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTCGGAAGCTGTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAATATGCGAGGAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGATTGCTGAGAGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAATAAAACCTTTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAGAGGAAAGTTCATGGGAATGAATGTTATGAGGTTTCATGGAGAAATATAGAAGGGCTCCAAGTTTCAGTAGTCCCTGGGGATCTTGTTAAAAGTGCGTGCCCGGAGAAAATAACAGAATTTTTGGAGAAGAAGGGTGAGGAGAAGAAGCAGAAGAGGAGAGCAAGTAAAGAAATCAGGGCAGGCTGCAGTGAAAGATGTTGATGAACAGCTCCAAGAGTTGCTGCTTGGTATTGAAGCTGATAGTGGTGGCATATTGGGTGCTACAGCCAGTGTGTGTCAGACTCTGACAGCAGCCTACACTGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTCCAAGTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAAGATGGAGTCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGCCCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG]

[+] EMBL C91751               [AAATCGGAATTTGAAGTTTGGAGTCACCGCCGCCGTTGAGGTCCGTCGTCTCGTCCGAGTCCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGGGACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTNCAGAACAAGAAGGTGTGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGNCGGCCTTCG CAAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGNATCCGGGCCTNCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK102542             [                                       GGTCCGTCGTCTCGTCCGAGTCCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGGGACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTCCAGAACAAGAAGGTGTGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGCCGGCCTTCGCCAAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGCATCCGCGCCCTCCTCGCCCTCAACTGCACCCTCCTCTTCGTCACCGATGGGGCTATACCTTCACTTAAGTTGGCCACTTACCGCCGTCGCCTCGGATCCATTTCTCATGTCTCTGCCACTCACTCTCTACTTCTGCACTGCAAACAACCTTTTGCTTAATTACTTGTACTACATTGCTTGCTTCCCCTGTTGTTTAGGCTGCTAAAGAATCAGATCAGCCCAATTCACACCCATCCATTTCACTGCGTCGCAACAAGGGTTCCGAGTTCTCCTGCATGATTAAAGAGGCCAAGCGTCTCGGCATGGCCCTCGGCATCCCTTGCTTGGACGGATTGGAGGAGGCTGAAGCACAGTGTGCATCCCTAGATCTAGAGTCACTCTGTGATGGCTGTTTCACTTCAGACTCGGATGCTTTTCTTTTTGGCGCTAGGACTGTTTATAGAGATGTTTTCATAGGGGAGGGTGGCTATGTCATTTGCTATGAAATGGAAGACATAGAGAAAACTCTTGGCTTTGGCAGGAACTCGCTGGTAAGTTGCAATGAATTTGTTCTGCCCGAGTTTCAGCTTATGGGATCTCTTCTGAACAAATGTTTTGACTGCTTGTGACATATCACAAAGATGTAAAATAAACTTACTTAAATATGCCCCTTATGCTCCTAGAAAGATCACTTAGACTTTTGTCAGTTAATGGCTTAACACGGTCAAAGCAACTAATAGATAAAGACCTTTAAGAGTAGACTGCACTGCAGGCACAACAGCTTAGTAAGTGAATGCAATGTGCTGATTTAAAACAAGAACTTGCAAGTTGTATGCATAGAGCAACACCATTTTCTCAACTCTGATATCACAAGAAAATGTCTCAGCGCACTCTTAAAAATCCTTTGGGTAATTATCATGTATTAGTCAGAGATTACGGGATGTTGCATGTAATTGCTGATGACTTGTATGACAATATGATGCAATAACAATATTACATCTCCCACCAATGACTTTTTTTTGGGCTTCTGATTCTCAGGATTTTTTTTTTGTGTGATAATGCGTAAATTCTTATTGTCCTGACTTGACAACCTTTCCAGATATCACTTGCAGTGCTCCTTGGTAGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCAGTAAGTACAAAAAAAACTGTCATTTTCATTGTCTTAGTATAACATGCATCTGTTCTTATATGTTTCTATATGAAATCTGACACTCGACGACAAGATGGGAATCATGGAGCTTATCATTATATTTGTAATGGTGCTCTTTTAATGTTCCAGGAAACAGCATGCCGGCTTGTTAAGTCTGTAGGCGACAATTTAATTCTTGATCAGATTTTGTCTAATGGAGTTAAAGCTACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAAGGTGGACGACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGATGGTCAATTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTCGGAAGCTGTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAATATGCGAGGAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGATTGCTGAGAGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAATAAAACCTTTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAGAGGAAAGTTCATGGGAATGAATGTTATGAGGTTTCATGGAGAAATATAGAAGGGCTCCAAGTTTCAGTAGTCCCTGGGGATCTTGTTAAAAGTGCGTGCCCGGAGAAAATAACAGAATTTTTGGAGAAGAAGGGTGAGGAGAAGAAGCAGAAGAGGAGAGCAAGTAAAGAAATCAGGGCAGGCTGCAGTGAAAGATGTTGATGAACAGCTCCAAGAGTTGCTGCTTGGTATTGAAGCTGATAGTGGTGGCATATTGGGTGCTACAGCCAGTGTGTGTCAGACTCTGACAGCAGCCTACACTGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTCCAAGTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAAGATGGAGTCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGCCCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG]




>consensus_9344#0
AAATCGGAATTTGAAGTTTGGAGTCACCGCCGCCGTTGAGGTCCGTCGTCTCGTCCGAGT
CCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGG
GACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTNCAGAACAAGAAGGTG
TGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGNCGGCCTTC
GCAAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGNATCCGGGCCTNCTTCGCCCTCA
ACTGCACCCTCCTCTTCGTCACCGATGGGGCTATACCTTCACTTAAGTTGGCCACTTACC
GCCGTCGCCTCGGATCCATTTCTCATGTCTCTGCCACTCACTCTCTACTTCTGCACTGCA
AACAACCTTTTGCTTAATTACTTGTACTACATTGCTTGCTTCCCCTGTTGTTTAGGCTGC
TAAAGAATCAGATCAGCCCAATTCACACCCATCCATTTCACTGCGTCGCAACAAGGGTTC
CGAGTTCTCCTGCATGATTAAAGAGGCCAAGCGTCTCGGCATGGCCCTCGGCATCCCTTG
CTTGGACGGATTGGAGGAGGCTGAAGCACAGTGTGCATCCCTAGATCTAGAGTCACTCTG
TGATGGCTGTTTCACTTCAGACTCGGATGCTTTTCTTTTTGGCGCTAGGACTGTTTATAG
AGATGTTTTCATAGGGGAGGGTGGCTATGTCATTTGCTATGAAATGGAAGACATAGAGAA
AACTCTTGGCTTTGGCAGGAACTCGCTGGTAAGTTGCAATGAATTTGTTCTGCCCGAGTT
TCAGCTTATGGGATCTCTTCTGAACAAATGTTTTGACTGCTTGTGACATATCACAAAGAT
GTAAAATAAACTTACTTAAATATGCCCCTTATGCTCCTAGAAAGATCACTTAGACTTTTG
TCAGTTAATGGCTTAACACGGTCAAAGCAACTAATAGATAAAGACCTTTAAGAGTAGACT
GCACTGCAGGCACAACAGCTTAGTAAGTGAATGCAATGTGCTGATTTAAAACAAGAACTT
GCAAGTTGTATGCATAGAGCAACACCATTTTCTCAACTCTGATATCACAAGAAAATGTCT
CAGCGCACTCTTAAAAATCCTTTGGGTAATTATCATGTATTAGTCAGAGATTACGGGATG
TTGCATGTAATTGCTGATGACTTGTATGACAATATGATGCAATAACAATATTACATCTCC
CACCAATGACTTTTTTTTGGGCTTCTGATTCTCAGGATTTTTTTTTTGTGTGATAATGCG
TAAATTCTTATTGTCCTGACTTGACAACCTTTCCAGATATCACTTGCAGTGCTCCTTGGT
AGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCAGTAAGTACAAAAAAAACTGTCATT
TTCATTGTCTTAGTATAACATGCATCTGTTCTTATATGTTTCTATATGAAATCTGACACT
CGACGACAAGATGGGAATCATGGAGCTTATCATTATATTTGTAATGGTGCTCTTTTAATG
TTCCAGGAAACAGCATGCCGGCTTGTTAAGTCTGTAGGCGACAATTTAATTCTTGATCAG
ATTTTGTCTAATGGAGTTAAAGCTACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAAG
GTGGACGACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGAT
GGTCAATTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTCG
GAAGCTGTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAATA
TGCGAGGAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGATT
GCTGAGAGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAATA
AAACCTTTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAGAGG
AAAGTTCATGGGAATGAATGTTATGAGGTTTCATGGAGAAATATAGAAGGGCTCCAAGTT
TCAGTAGTCCCTGGGGATCTTGTTAAAAGTGCGTGCCCGGAGAAAATAACAGAATTTTTG
GAGAAGAAGGGTGAGGAGAAGAAGCAGAAGAGGAGAGCAAGTAAAGAAATCAGGGCAGGC
TGCAGTGAAAGATGTTGATGAACAGCTCCAAGAGTTGCTGCTTGGTATTGAAGCTGATAG
TGGTGGCATATTGGGTGCTACAGCCAGTGTGTGTCAGACTCTGACAGCAGCCTACACTGT
GGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTCCAA
GTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAAGAT
GGAGTCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGAT
TGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGCCCT
GGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG

consensusID : consensus_9344#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1833
fasta sequence

                              [AAATCGGAATTTGAAGTTTGGAGTCACCGCCGCCGTTGAGGTCCGTCGTCTCGTCCGAGTCCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGGGACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTCCAGAACAAGAAGGTGTGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGCCGGCCTTCGCCAAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGCATCCGCGCCCTCCTCGCCCTCAACTGCACCCTCCTCTTCGTCACCGATGGGGCTATACCTTCACTTAAGTTGGCCACTTACCGCCGTCGCCTCGGATCCATTTCTCATGCTGCTAAAGAATCAGATCAGCCCAATTCACACCCATCCATTTCACTGCGTCGCAACAAGGGTTCCGAGTTCTCCTGCATGATTAAAGAGGCCAAGCGTCTCGGCATGGCCCTCGGCATCCCTTGCTTGGACGGATTGGAGGAGGCTGAAGCACAGTGTGCATCCCTAGATCTAGAGTCACTCTGTGATGGCTGTTTCACTTCAGACTCGGATGCTTTTCTTTTTGGCGCTAGGACTGTTTATAGAGATGTTTTCATAGGGGAGGGTGGCTATGTCATTTGCTATGAAATGGAAGACATAGAGAAAACTCTTGGCTTTGGCAGGAACTCGCTGATATCACTTGCAGTGCTCCTTGGTAGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCAGAAACAGCATGCCGGCTTGTTAAGTCTGTAGGCGACAATTTAATTCTTGATCAGATTTTGTCTAATGGAGTTAAAGCTACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAAGGTGGACGACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGATGGTCAATTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTCGGAAGCTGTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAATATGCGAGGAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGATTGCTGAGAGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAATAAAACCTTTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAG-AGGAAAGTTCATGGGAAT-GAATGTTATGAGGTTTCATGGAGAAATATAGAAGGGCTCCAAGTTTCAGTAGTCCCTGGGGATCTTGTTAAAAGTGCGTGCCCGGAGAAAATAACAGAATTTTTGGAGAAGAAGGGTGAAGAGAAGAAGCAGAAGAGGAGAGCAAGGCCAAAGAAATCAGGGCAGGCTGCAGTGAAAGATGTTGATGAACAGCTCCAAGAGTTGCTGCTTGGTATTG-AAGCTGATAGTGGTGGCATATTGGGTGCTACAGCCAGTGTGTGTCAGACTCTGACAGCAGCCTACACTGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTCCAAGTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAAGATGGAGTCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGCCCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG]

[+] EMBL AB074260             [AAATCGGAATTTGAAGTTTGGAGTCACCGCCGCCGTTGAGGTCCGTCGTCTCGTCCGAGTCCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGGGACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTCCAGAACAAGAAGGTGTGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGCCGGCCTTCGCCAAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGCATCCGCGCCCTCCTCGCCCTCAACTGCACCCTCCTCTTCGTCACCGATGGGGCTATACCTTCACTTAAGTTGGCCACTTACCGCCGTCGCCTCGGATCCATTTCTCATGCTGCTAAAGAATCAGATCAGCCCAATTCACACCCATCCATTTCACTGCGTCGCAACAAGGGTTCCGAGTTCTCCTGCATGATTAAAGAGGCCAAGCGTCTCGGCATGGCCCTCGGCATCCCTTGCTTGGACGGATTGGAGGAGGCTGAAGCACAGTGTGCATCCCTAGATCTAGAGTCACTCTGTGATGGCTGTTTCACTTCAGACTCGGATGCTTTTCTTTTTGGCGCTAGGACTGTTTATAGAGATGTTTTCATAGGGGAGGGTGGCTATGTCATTTGCTATGAAATGGAAGACATAGAGAAAACTCTTGGCTTTGGCAGGAACTCGCTGATATCACTTGCAGTGCTCCTTGGTAGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCAGAAACAGCATGCCGGCTTGTTAAGTCTGTAGGCGACAATTTAATTCTTGATCAGATTTTGTCTAATGGAGTTAAAGCTACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAAGGTGGACGACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGATGGTCAATTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTCGGAAGCTGTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAATATGCGAGGAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGATTGCTGAGAGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAATAAAACCTTTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAG AGGAAAGTTCATGGGAAT GAATGTTATGAGGTTTCATGGAGAAATATAGAAGGGCTCCAAGTTTCAGTAGTCCCTGGGGATCTTGTTAAAAGTGCGTGCCCGGAGAAAATAACAGAATTTTTGGAGAAGAAGGGTGAAGAGAAGAAGCAGAAGAGGAGAGCAAGGCCAAAGAAATCAGGGCAGGCTGCAGTGAAAGATGTTGATGAACAGCTCCAAGAGTTGCTGCTTGGTATTG AAGCTGATAGTGGTGGCATATTGGGTGCTACAGCCAGTGTGTGTCAGACTCTGACAGCAGCCTACACTGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTCCAAGTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAAGATGGAGTCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGCCCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG]
[+] EMBL AU165869             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAAGGTGGACGACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGATGGTCAATTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTCGGAAGCTGTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAATATGCGAGGAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGATTGCTGAGAGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAATAAAACCTTTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAGAAGGAAAGTTCATGGGAATGGAATGTTATGAGGGTTCATGGAGAAATATAGANGGG TCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU030712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTGCTGCTTGGTATTGAAAGCTGATAGTGGTGGCATATTGGGTGCTACAGCCANTGTGTGTCAGACTCTGACAGCAGCCTACACTGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTCCAAGTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAAGATGGAGTCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGCCCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG]
[+] EMBL AU029757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGACAGCAGCCTACACTGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTCCAAGTCCCAAAAGAAGATGATGGCCGNGGATGTCAATGTGGCTGGTATGAACATGAACAAGATGGAGTCAGAAANTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGCCCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG]




>consensus_9344#1
AAATCGGAATTTGAAGTTTGGAGTCACCGCCGCCGTTGAGGTCCGTCGTCTCGTCCGAGT
CCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGG
GACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTCCAGAACAAGAAGGTG
TGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGCCGGCCTTC
GCCAAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGCATCCGCGCCCTCCTCGCCCTC
AACTGCACCCTCCTCTTCGTCACCGATGGGGCTATACCTTCACTTAAGTTGGCCACTTAC
CGCCGTCGCCTCGGATCCATTTCTCATGCTGCTAAAGAATCAGATCAGCCCAATTCACAC
CCATCCATTTCACTGCGTCGCAACAAGGGTTCCGAGTTCTCCTGCATGATTAAAGAGGCC
AAGCGTCTCGGCATGGCCCTCGGCATCCCTTGCTTGGACGGATTGGAGGAGGCTGAAGCA
CAGTGTGCATCCCTAGATCTAGAGTCACTCTGTGATGGCTGTTTCACTTCAGACTCGGAT
GCTTTTCTTTTTGGCGCTAGGACTGTTTATAGAGATGTTTTCATAGGGGAGGGTGGCTAT
GTCATTTGCTATGAAATGGAAGACATAGAGAAAACTCTTGGCTTTGGCAGGAACTCGCTG
ATATCACTTGCAGTGCTCCTTGGTAGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCA
GAAACAGCATGCCGGCTTGTTAAGTCTGTAGGCGACAATTTAATTCTTGATCAGATTTTG
TCTAATGGAGTTAAAGCTACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAAGGTGGAC
GACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGATGGTCAA
TTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTCGGAAGCT
GTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAATATGCGAG
GAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGATTGCTGAG
AGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAATAAAACCT
TTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAGAGGAAAGTT
CATGGGAATGAATGTTATGAGGTTTCATGGAGAAATATAGAAGGGCTCCAAGTTTCAGTA
GTCCCTGGGGATCTTGTTAAAAGTGCGTGCCCGGAGAAAATAACAGAATTTTTGGAGAAG
AAGGGTGAAGAGAAGAAGCAGAAGAGGAGAGCAAGGCCAAAGAAATCAGGGCAGGCTGCA
GTGAAAGATGTTGATGAACAGCTCCAAGAGTTGCTGCTTGGTATTGAAGCTGATAGTGGT
GGCATATTGGGTGCTACAGCCAGTGTGTGTCAGACTCTGACAGCAGCCTACACTGTGGCT
GTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTCCAAGTCC
CAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAAGATGGAG
TCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGATTGAT
CTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGCCCTGGCA
GACATAAGCAATGTTGGTTCACACAGCACTGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9344#0      AAATCGGAATTTGAAGTTTGGAGTCACCGCCGCCGTTGAGGTCCGTCGTCTCGTCCGAGT 60
consensus_9344#1      AAATCGGAATTTGAAGTTTGGAGTCACCGCCGCCGTTGAGGTCCGTCGTCTCGTCCGAGT 60
                      ************************************************************

consensus_9344#0      CCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGG 120
consensus_9344#1      CCGGTCCGGCGGAAGTAGGGGCGGAAGTGCGGGCGGGAGATGGGGGTGAAGAACCTGTGG 120
                      ************************************************************

consensus_9344#0      GACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTNCAGAACAAGAAGGTG 180
consensus_9344#1      GACATCCTGGAGTCGTGCAAGAAGAAGCTCCCGCTCCACCACCTCCAGAACAAGAAGGTG 180
                      ******************************************** ***************

consensus_9344#0      TGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGNCGGCCTTC 240
consensus_9344#1      TGCGTGGACCTGTCGTGCTGGCTGGTCCAGATGTACAGCGCCAACCGCTCGCCGGCCTTC 240
                      *************************************************** ********

consensus_9344#0      GC-AAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGNATCCGGGCCTNCTTCGCCCTC 299
consensus_9344#1      GCCAAGGACAAGGTCTACCTCAAGAACCTCTTCCACCGCATCCGCGCCCTCCTCGCCCTC 300
                      ** *********************************** ***** ***  * ********

consensus_9344#0      AACTGCACCCTCCTCTTCGTCACCGATGGGGCTATACCTTCACTTAAGTTGGCCACTTAC 359
consensus_9344#1      AACTGCACCCTCCTCTTCGTCACCGATGGGGCTATACCTTCACTTAAGTTGGCCACTTAC 360
                      ************************************************************

consensus_9344#0      CGCCGTCGCCTCGGATCCATTTCTCATGTCTCTGCCACTCACTCTCTACTTCTGCACTGC 419
consensus_9344#1      CGCCGTCGCCTCGGATCCATTTCTCATG-------------------------------- 388
                      ****************************                                

consensus_9344#0      AAACAACCTTTTGCTTAATTACTTGTACTACATTGCTTGCTTCCCCTGTTGTTTAGGCTG 479
consensus_9344#1      ---------------------------------------------------------CTG 391
                                                                               ***

consensus_9344#0      CTAAAGAATCAGATCAGCCCAATTCACACCCATCCATTTCACTGCGTCGCAACAAGGGTT 539
consensus_9344#1      CTAAAGAATCAGATCAGCCCAATTCACACCCATCCATTTCACTGCGTCGCAACAAGGGTT 451
                      ************************************************************

consensus_9344#0      CCGAGTTCTCCTGCATGATTAAAGAGGCCAAGCGTCTCGGCATGGCCCTCGGCATCCCTT 599
consensus_9344#1      CCGAGTTCTCCTGCATGATTAAAGAGGCCAAGCGTCTCGGCATGGCCCTCGGCATCCCTT 511
                      ************************************************************

consensus_9344#0      GCTTGGACGGATTGGAGGAGGCTGAAGCACAGTGTGCATCCCTAGATCTAGAGTCACTCT 659
consensus_9344#1      GCTTGGACGGATTGGAGGAGGCTGAAGCACAGTGTGCATCCCTAGATCTAGAGTCACTCT 571
                      ************************************************************

consensus_9344#0      GTGATGGCTGTTTCACTTCAGACTCGGATGCTTTTCTTTTTGGCGCTAGGACTGTTTATA 719
consensus_9344#1      GTGATGGCTGTTTCACTTCAGACTCGGATGCTTTTCTTTTTGGCGCTAGGACTGTTTATA 631
                      ************************************************************

consensus_9344#0      GAGATGTTTTCATAGGGGAGGGTGGCTATGTCATTTGCTATGAAATGGAAGACATAGAGA 779
consensus_9344#1      GAGATGTTTTCATAGGGGAGGGTGGCTATGTCATTTGCTATGAAATGGAAGACATAGAGA 691
                      ************************************************************

consensus_9344#0      AAACTCTTGGCTTTGGCAGGAACTCGCTGGTAAGTTGCAATGAATTTGTTCTGCCCGAGT 839
consensus_9344#1      AAACTCTTGGCTTTGGCAGGAACTCGCTG------------------------------- 720
                      *****************************                               

consensus_9344#0      TTCAGCTTATGGGATCTCTTCTGAACAAATGTTTTGACTGCTTGTGACATATCACAAAGA 899
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      TGTAAAATAAACTTACTTAAATATGCCCCTTATGCTCCTAGAAAGATCACTTAGACTTTT 959
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      GTCAGTTAATGGCTTAACACGGTCAAAGCAACTAATAGATAAAGACCTTTAAGAGTAGAC 1019
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      TGCACTGCAGGCACAACAGCTTAGTAAGTGAATGCAATGTGCTGATTTAAAACAAGAACT 1079
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      TGCAAGTTGTATGCATAGAGCAACACCATTTTCTCAACTCTGATATCACAAGAAAATGTC 1139
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      TCAGCGCACTCTTAAAAATCCTTTGGGTAATTATCATGTATTAGTCAGAGATTACGGGAT 1199
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      GTTGCATGTAATTGCTGATGACTTGTATGACAATATGATGCAATAACAATATTACATCTC 1259
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      CCACCAATGACTTTTTTTTGGGCTTCTGATTCTCAGGATTTTTTTTTTGTGTGATAATGC 1319
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      GTAAATTCTTATTGTCCTGACTTGACAACCTTTCCAGATATCACTTGCAGTGCTCCTTGG 1379
consensus_9344#1      -------------------------------------ATATCACTTGCAGTGCTCCTTGG 743
                                                           ***********************

consensus_9344#0      TAGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCAGTAAGTACAAAAAAAACTGTCAT 1439
consensus_9344#1      TAGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCAG---------------------- 781
                      **************************************                      

consensus_9344#0      TTTCATTGTCTTAGTATAACATGCATCTGTTCTTATATGTTTCTATATGAAATCTGACAC 1499
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      TCGACGACAAGATGGGAATCATGGAGCTTATCATTATATTTGTAATGGTGCTCTTTTAAT 1559
consensus_9344#1      ------------------------------------------------------------
                                                                                  

consensus_9344#0      GTTCCAGGAAACAGCATGCCGGCTTGTTAAGTCTGTAGGCGACAATTTAATTCTTGATCA 1619
consensus_9344#1      --------AAACAGCATGCCGGCTTGTTAAGTCTGTAGGCGACAATTTAATTCTTGATCA 833
                              ****************************************************

consensus_9344#0      GATTTTGTCTAATGGAGTTAAAGCTACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAA 1679
consensus_9344#1      GATTTTGTCTAATGGAGTTAAAGCTACTAGAAAATGTAAAGGGAAAAATAGTGGAAACAA 893
                      ************************************************************

consensus_9344#0      GGTGGACGACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGA 1739
consensus_9344#1      GGTGGACGACATGTGCCCCAAAGCAAGTTCCTGCGAGGTTGGCATGACTCAAGACTCTGA 953
                      ************************************************************

consensus_9344#0      TGGTCAATTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTC 1799
consensus_9344#1      TGGTCAATTTCGTGACGTCATAAATGCATATCTGGAGCCAAAATGTCACTCACCTGATTC 1013
                      ************************************************************

consensus_9344#0      GGAAGCTGTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAAT 1859
consensus_9344#1      GGAAGCTGTGCAGAGGGTATGCGGACAGCACCCATTTCTTCGGCCACAGCTTCAAAAAAT 1073
                      ************************************************************

consensus_9344#0      ATGCGAGGAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGAT 1919
consensus_9344#1      ATGCGAGGAATATTTTGATTGGAGTCCAGAGAAAACTGATCAATATATACTTCCGAAGAT 1133
                      ************************************************************

consensus_9344#0      TGCTGAGAGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAAT 1979
consensus_9344#1      TGCTGAGAGAGAACTTCGGAGGTTTTCAGACCTTCGCTCTGCGTCTTCAGCACTAGGAAT 1193
                      ************************************************************

consensus_9344#0      AAAACCTTTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAGAG 2039
consensus_9344#1      AAAACCTTTGTTGAGTGAGATACCAGTACCATGCCCTGTACTGGCGATTGTGAAGCAGAG 1253
                      ************************************************************

consensus_9344#0      GAAAGTTCATGGGAATGAATGTTATGAGGTTTCATGGAGAAATATAGAAGGGCTCCAAGT 2099
consensus_9344#1      GAAAGTTCATGGGAATGAATGTTATGAGGTTTCATGGAGAAATATAGAAGGGCTCCAAGT 1313
                      ************************************************************

consensus_9344#0      TTCAGTAGTCCCTGGGGATCTTGTTAAAAGTGCGTGCCCGGAGAAAATAACAGAATTTTT 2159
consensus_9344#1      TTCAGTAGTCCCTGGGGATCTTGTTAAAAGTGCGTGCCCGGAGAAAATAACAGAATTTTT 1373
                      ************************************************************

consensus_9344#0      GGAGAAGAAGGGTGAGGAGAAGAAGCAGAAGAGGAGAGCAAG--TAAAGAAATCAGGGCA 2217
consensus_9344#1      GGAGAAGAAGGGTGAAGAGAAGAAGCAGAAGAGGAGAGCAAGGCCAAAGAAATCAGGGCA 1433
                      *************** **************************   ***************

consensus_9344#0      GGCTGCAGTGAAAGATGTTGATGAACAGCTCCAAGAGTTGCTGCTTGGTATTGAAGCTGA 2277
consensus_9344#1      GGCTGCAGTGAAAGATGTTGATGAACAGCTCCAAGAGTTGCTGCTTGGTATTGAAGCTGA 1493
                      ************************************************************

consensus_9344#0      TAGTGGTGGCATATTGGGTGCTACAGCCAGTGTGTGTCAGACTCTGACAGCAGCCTACAC 2337
consensus_9344#1      TAGTGGTGGCATATTGGGTGCTACAGCCAGTGTGTGTCAGACTCTGACAGCAGCCTACAC 1553
                      ************************************************************

consensus_9344#0      TGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTC 2397
consensus_9344#1      TGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTCTC 1613
                      ************************************************************

consensus_9344#0      CAAGTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAA 2457
consensus_9344#1      CAAGTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAA 1673
                      ************************************************************

consensus_9344#0      GATGGAGTCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCT 2517
consensus_9344#1      GATGGAGTCAGAAAGTAGTTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCT 1733
                      ************************************************************

consensus_9344#0      GATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGC 2577
consensus_9344#1      GATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATGGTATGAAAGGTGGAAGAAGAGC 1793
                      ************************************************************

consensus_9344#0      CCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG 2617
consensus_9344#1      CCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAG 1833
                      ****************************************