These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 871 fasta sequence [GAGAACAAGGCGGGAGAGAAGATGACACCGGAGCAGTTGATATGGTTGTACTCGATCATGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATA-CGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTA-CAGC-TTTGGAGCT-CTCTACTTTGT-CGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTGGATTTTGAGAGCACTCATAAGCCGGAGCA-CAGGGTTCGGAGCAGATTGCCCTCTACTGAGCCTTGAGCCCTTGACAGCTCCAGTTTTACTCTTGTGCAGTGTACTGAAATTCCGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAG-GCAGCAGAAGGCTTATGGTTACACGTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCCTTTTGGCTGGCCTGCCNTCTTGCTTCGTAACTTGACCAAAAAAA] [+] EMBL AK110750 [GAGAACAAGGCGGGAGAGAAGATGACACCGGAGCAGTTGATATGGTTGTACTCGATCATGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATA CGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTA CAGC TTTGGAGCT CTCTACTTTGT CGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTGGATTTTGAGAGCACTCATAAGCCGGAGCA CAGGGTTCGGAGCAGATTGCCCTCTACTGAGCCTTGAGCCCTTGACAGCTCCAGTTTTACTCTTGTGCAGTGTACTGAAATTCCGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAG GCAGCAGAAGGCTTATGGTTACACGTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTT ] [+] EMBL AU031216 [ TGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATA CGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTACCAGCTTTTGGAGCTCCTCTANTTTGTCCGAGGTTGANATCG ] [+] EMBL BI118802 [ TGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACCGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAna ] [+] EMBL BI118775 [ TGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTANTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATA CGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGA ] [+] EMBL BM419342 [ tcCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTA CAGC TTTGGAGCT CTCTACTTTGT CGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTGGATTTTGAGAGCACTCATAAGCCGGAGCACCAGGGTTCGGAGCAGATTGCCCTCTACTGAGCCTTGAGCCCTTGACAGCTCCAGTTTTACCCTTGTGCAGTGTACTGAAATTCTGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGNGCAGCAGAAGGCTTATGGTTACACGTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCCTTTTGGCTGGCCTGCCNTCTTGCTTCGTAACTTGACCAAAAAAA] consensusID : consensus_9371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [AGATCGNGAAGCTTCCNGAAGTTGAGCTTGCTTTTGTTCATGTGGATTTTGAGNGCACTCATANGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTANTGAGCCTTGAGCCCTTGACAGCNCCAGTTTTACTCTTGTGCAGTNTACTGAAATTCTGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACACGTACACGGTNACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031217 [AGATCGNGAAGCTTCCNGAAGTTGAGCTTGCTTTTGTTCATGTGGATTTTGAGNGCACTCATANGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTANTGAGCCTTGAGCCCTTGACAGCNCCAGTTTTACTCTTGTGCAGTNTACTGAAATTCTGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACACGTACACGGTNACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9371#0 GAGAACAAGGCGGGAGAGAAGATGACACCGGAGCAGTTGATATGGTTGTACTCGATCATG 60 consensus_9371#1 ------------------------------------------------------------ consensus_9371#0 CTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGC 120 consensus_9371#1 ------------------------------------------------------------ consensus_9371#0 ATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTA 180 consensus_9371#1 ------------------------------------------------------------ consensus_9371#0 GTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTA 240 consensus_9371#1 ------------------------------------------------------------ consensus_9371#0 CTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGTTACACTG 300 consensus_9371#1 ------------------------------------------------------------ consensus_9371#0 GTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCAC 360 consensus_9371#1 ------------------------------------------------------------ consensus_9371#0 GATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTT 420 consensus_9371#1 ------------------------------------------------------------ consensus_9371#0 GTCGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGT 480 consensus_9371#1 ------------------------------------------------------------ consensus_9371#0 GAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTG 540 consensus_9371#1 ----------------AGATCGNGAAGCTTCCNGAAGTTGAGCTTGCTTTTGTTCATGTG 44 ****** ********* ********** **************** consensus_9371#0 GATTTTGAGAGCACTCATAAGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTACTGAG 600 consensus_9371#1 GATTTTGAGNGCACTCATANGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTANTGAG 104 ********* ********* *********************************** **** consensus_9371#0 CCTTGAGCCCTTGACAGCTCCAGTTTTACTCTTGTGCAGTGTACTGAAATTCCGGTACTG 660 consensus_9371#1 CCTTGAGCCCTTGACAGCNCCAGTTTTACTCTTGTGCAGTNTACTGAAATTCTGGTACTG 164 ****************** ********************* *********** ******* consensus_9371#0 TAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACAC 720 consensus_9371#1 TAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACAC 224 ************************************************************ consensus_9371#0 GTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGT 780 consensus_9371#1 GTACACGGTNACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGT 284 ********* ************************************************** consensus_9371#0 GAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCCTTTTGGCTGGCCT 840 consensus_9371#1 GAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCA----AAAAAAAAA 340 ********************************************** consensus_9371#0 GCCNTCTTGCTTCGTAACTTGACCAAAAAAA 871 consensus_9371#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 371 ** * ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||