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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 785 fasta sequence
[AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT-CCATGCCAATGCCAAGAGTCAGTG-TTTCATCGGTAGAGCTAGAG-AAGAAGATAGGTTTT-CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAACGTGCAAAGAAACTAAAAAA]
[+] EMBL CA764215 [AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTT GTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGNGATGATACTAAATATATCTATATTTTCAGGTAATTTTGGTGTAAAAANTAGCTATCTTTTGGTGCTGAATGAACAAGGCCGGCGNTTAATTT ]
[+] EMBL AU031230 [ CCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTGTTTTCATCGGTAGAGCTAGAGNAGGAAGATAGGTTTTCCGAATCAATGT ]
[+] EMBL AU095353 [ AAATAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTT CGGAG AAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATNAGAAGAAAGCAACNACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAA TGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGG GTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCT ACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCT ]
[+] EMBL AU031231 [ cCAAGGTATCTCAGGANCCTGAACAGCTGGGCNGCACTAGCAGTTCCCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAA ]
[+] EMBL AU031410 [ TCAGGAGCNTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCNCGACGTCCTTGATGCT ACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAATATTCGTGCAAAGAAACTAAAAAA]
consensusID : consensus_9372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[AGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCCCAGAGAGAGATCTAGGGAGAGATGTCAGGGAAAGATCAAAAGAAAGCAGCAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCATGCCAATGCCAAGAAGTGAAGCTGCAGAGAGAAGCGTGGATGAGCAAATGGTTCGGCATGCAGTGCTGCAAGCCATCAAGAAATGCATGGACGGATCATCAATTTGATCCAGAATGAACTACTTTATGTTTAGTTCTAAAAAAAGTACTTTATGTTTCGACTTAATACTCATCTGCCGTAGCGCAAGCTTATTGTGAGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCATCTCTTGGTGCTGAATGAACAAGAACGGCGTTTTGTCGTTTAAATATTCGTGCAAAGAATCTAAATTGTA]
[+] EMBL AK062951 [AGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCCCAGAGAGAGATCTAGGGAGAGATGTCAGGGAAAGATCAAAAGAAAGCAGCAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCATGCCAATGCCAAGAAGTGAAGCTGCAGAGAGAAGCGTGGATGAGCAAATGGTTCGGCATGCAGTGCTGCAAGCCATCAAGAAATGCATGGACGGATCATCAATTTGATCCAGAATGAACTACTTTATGTTTAGTTCTAAAAAAAGTACTTTATGTTTCGACTTAATACTCATCTGCCGTAGCGCAAGCTTATTGTGAGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCATCTCTTGGTGCTGAATGAACAAGAACGGCGTTTTGTCGTTTAAATATTCGTGCAAAGAATCTAAATTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9372#0 AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTC 60
consensus_9372#1 -------------------------------------------AGCAGCTGGTCTCTCTC 17
*****************
consensus_9372#0 TTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAG 120
consensus_9372#1 TTGATTTGTGTTTCCCCAGAGAGAGA----------------TCTAGGGAGAGATGTCAG 61
*************** *** ***** ** ***************
consensus_9372#0 GGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATG 180
consensus_9372#1 GGAAAGATCAAAAGAAAGCAGCA---GCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTG 118
**** ***** ********* ** ****************************** **
consensus_9372#0 TTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCA 240
consensus_9372#1 TTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCA 178
************************************* **********************
consensus_9372#0 AAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCA 300
consensus_9372#1 AAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCA 238
************************************************************
consensus_9372#0 TGCCAATGCCAAGAGTCAGTGTTTCATCGGTAGAGCTAGAGAAGAAGATAGGTTTTCGAA 360
consensus_9372#1 TGCCAATGCCAAGAA--------------GTGAAGCTGCAGA------------------ 266
************** ** **** ***
consensus_9372#0 TCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCG 420
consensus_9372#1 -----------------------------------------------------------G 267
*
consensus_9372#0 AGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTC 480
consensus_9372#1 AGAAGCGTGG---------------------------ATGAGCAAATGG--------TTC 292
** *** *** ** *** * * ***
consensus_9372#0 GTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAA 540
consensus_9372#1 GGCATGCAGTGCT--------GC-------AAGCCATCAAGAAATGCATGGACGGATCAT 337
* * ** ** *** ** **** *** * ** **** * *
consensus_9372#0 TGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGAT 600
consensus_9372#1 CAATTTG---------------ATCCAGAATGAACTACTTT-----ATGTTTAGTTCTA- 376
** * * *** * *** * * ** ** * * ** *
consensus_9372#0 CCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTG 660
consensus_9372#1 -AAAAAAGTACTTTATGTTTCGACTTAA-TACTCATCTGCCGTAGCGCAAGCTTATTGTG 434
* ** * * ***************** * ******************* *********
consensus_9372#0 ATGATACTAAATA------TATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCT-A 713
consensus_9372#1 AGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCA 494
* *********** *********************************** *** *
consensus_9372#0 TCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAACGTGCAAA 773
consensus_9372#1 TCTCTTGGTGCTGAATGAACAAGAACGGCGT----TTTGTCGTTTAAATATTCGTGCAAA 550
*** ******************* ****** ************* * ********
consensus_9372#0 GAAACTAAAAAA-- 785
consensus_9372#1 GAATCTAAATTGTA 564
*** *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||