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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence
[CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCCTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGAAACGCATCCCAAATCCCTTTCTGCCCCCATAATGTGGAACATGTCCCAAATTCCCCCCCCCCGTTTGAATTGTTTGTTGTAATGCTGAAAGTGCCCCCANGGCTGGGCTTTCCCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCTAATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCCAATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTTNCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAACGAACAANTTTNNCGGNGCNN]
[+] EMBL BE229290 [CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCCTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGAAACGCATCCCAAATCCCTTTCTGCCCCCATAATGTGGAACATGTCCCAAATTCCCCCCCCCCGTTTGAATTGTTTGTTGTAATGCTGAAAGTGCCCCCANGGCTGGGCTTTCCCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCTAATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCCAATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTTNCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAACGAACAANTTTNNCGGNGCNN]
consensusID : consensus_9373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 702 fasta sequence
[GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC-TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG-TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCTGGCGTGTGGATTGGCGGCTGCGGGTTCGGGGGAGAGGACGATGCGAGAGAAAAAGCGGTGGATTAAAAGGGGGGATTTCTACTCCTTCAGTCCA]
[-] EMBL CF196045 [GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATANCNTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCT ]
[-] EMBL CF299011 [ TCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCTGGCGTGTGGATTGGCGGCTGCGGGTTCGGGGGAGAGGACGATGCGAGAGAAAAAGCGGTGGATTAAAAGGGGGGATTTCTACTCCTTCAGTCCA]
[-] EMBL BI795175 [ tttttTTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAA TTG TGGCTCACTCAGAACATAC TTGGTAATTCATATTTGGCACCTCGTTTCATCGTAGCAAA TGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCG TTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTAGTTA TGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGG CGGTCAGACGCTCATGAGTGAGAGCGA CTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCG ]
[-] EMBL AU031685 [ tttttttTTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGNACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGNCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGNTTGAGTT ]
[-] EMBL OSR05301A [ AATTGNCATGTCAGAATTTGATACAATGATTCCGGCACTGNGCTACTAGCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCANCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGNCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAA NTGGCGCGGCTTCTGGCGTGTGGATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9373#0 CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGT 60
consensus_9373#1 --GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGT 58
* ***************** ************* ********************
consensus_9373#0 CAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAG 120
consensus_9373#1 CAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAG 118
************************************************************
consensus_9373#0 CAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCA 180
consensus_9373#1 CAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCA 178
************************************************************
consensus_9373#0 AATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGT 240
consensus_9373#1 AATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGT 238
************************************************************
consensus_9373#0 AATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATG 300
consensus_9373#1 AATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATG 298
************************************************************
consensus_9373#0 ATTCCGGC-CTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGA 359
consensus_9373#1 ATTCCGGCACTGTCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGA 358
******** ************************ **************************
consensus_9373#0 AACGCATCCCAAATCCCTTTCTGCCC-CCATAATGTGGAACA-TGTCCCAAATTCCCCCC 417
consensus_9373#1 AGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCA 418
* ************* ********** ************ ** ******* * * * *
consensus_9373#0 C---CCCGTTTGAATTGT-TTGTTGTAATG--CTGAAAGTGCCCCCANGGCTGGGCTTTC 471
consensus_9373#1 CGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTT 478
* * ****** **** ******* ** *** **** *** **** ** **
consensus_9373#0 CCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCT 531
consensus_9373#1 TTCAGCTTC--TTGCTGTTATCATCGGTTTTAGGT----GTGGATCCGGCGCAA------ 526
* ** * * *** * ** * * **** ****
consensus_9373#0 AATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCC 591
consensus_9373#1 ------------CCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCC 574
*** ** ** *** * * ** ** * *** * * ** * **
consensus_9373#0 AATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTT 651
consensus_9373#1 CCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCT-------GGCGTGTGGA------TTG 621
* * ** * * * * ** *** ** ** **
consensus_9373#0 NCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAAC 711
consensus_9373#1 GCGGCTGCGGGTTCGGGGGAGAGGACG-ATGCGAGAGAAAAAGCGGTGGATTAAAAGGGG 680
* * * *** ** * * * * ** * * *
consensus_9373#0 GAA---CAANTTTNNCGGNGCNN 731
consensus_9373#1 GGATTTCTACTCCTTCAGTCCA- 702
* * * * * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||