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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1855 fasta sequence
[TTGCTGCTCCTCTTCTCCTCGCTTCGTCTTCTTCCTCCTCTCGCCTCTTCGTTGCGAGTAGAGAGATTTTTGTTGTGATTTTTGAGGGAATATTTTTGGATTTTTGGTTTATTTTTGTGTGGGTTTTTTTGGAGGTGTATTTATTTTGTTTTTTTGGTGGTGATTTATTTTTGAGAGGTTTTAAGGGATTAAGGGAGGTGTGTGAGGAAGATGGGGTTAGTGTGTGTGAGCTCCAATGGCGAGAGCTCGTGGCGGAAACCCTACTAGGTTGAGGAGGAGGAGGAGGTCGTCGTCGCGCTCGCGTGTGGACCATGGAGNCCAAGTCGGGGGAAGCGAGCGTTGCGCCGGTNGCCGTGGCGA-CCAAGGCAACGNCGGCGACGGTGAGC-TTCCAGCCGAAGGCCGGGTTGGCCCAGCAGGGTAGCTCGAGCGGTGGTGTGCTGGTGCCGCCGCCGCCTATGGCGGCGGGAGGAGGAGGAGTTGTGGTGGCGGCGGCGCCGGTGGCGGGGGTGGTGAAGGTGGGGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGACGGGAGCCTGATCCGGCCGCTGAACGCGACGCCGATCTCGGCGTCGGTACCCATGGCGGCCTCCGCGGTGGGGCCCTACACGCCGGCGTCGGCGGTGGGCGCCGCCATGAAGCGCGGGAGGGGTCGCCCCCTCGACTTCGCCTCCACGGCCAAGCTCCATCACCACCACCAACACCAGCACCATCACCAGCAGCAGCAGTTCGGCTTCCACTTCGACTCCATTGGTGAAATGGTGGCTTGTTCTGCTGGTGCGAATTTTACTCCTCACATCATCACTGTTGCTCCTGGAGAGGATGTGACTATGAAGGTCATATCATTTTCTCAACAAGGACCACGAGCTATCTGTATTCTATCTGCTAATGGTGTGATATCAAACGTTACACTGCGTCAACCTGATTCCTCGGGTGGCACATTAACTTACGAGGGACGTTTTGAGTTGCTATCTTTGTCTGGATCGTTTATGCCTACTGAAAACAGCGGAACACGGAGTCGGTCAGGTGGG-ATG-AGCGTTTC-TCTTGCCAGCCC-AGATGG-CCGTGTTGTCGGTGGTGG-AGTTGCTGGCCTTCTGGTGGCAGCAAGTCCTGTTCAGATTGTTGTCGGAAGCTTCCTACCAAGCTATCAAATGGAACAGAAGAATAAGAAGCCTAGGGTGGAAGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTGTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTGCTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCGATGTGAAGGTCACCGCCTCTGGAGCCTGAAACTGAGATGAACTGACCAGGATCCATGAAATTCCTGGTCTGTCACTGCTGCAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATCAGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTAGTTCTGTGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACTTAATTTGCTCCTGGTGTACCCCTTATTAAATTAGCATTAGAATTTTTTTTCACTCTAAAAAAAAAAAAAACAT]
[+] EMBL AU032101 [TTGCTGCTCCTCTTCTCCTCGCTTCGTCTTCTTCCTCCTCTCGCCTCTTCGTTGCGAGTAGAGAGATTTTTGTTGTGATTTTTGAGGGAATATTTTTGGATTTTTGGTTTATTTTTGTGTGGGTTTTTTTGGAGGTGTATTTATTTTGTTTTTTTGGTGGTGATTTATTTTTGAGAGGTTTTAAGGGATTAAGGGAGGTGTGTGAGGAAGATGGGGTTAGTGTGTGTGAGCTCCAATGGCGAGAGCTCGTGGCGGAAACCCTACTAGGTTGAGGAGGAGGAGGAGGTCGTCGTCGCGCTCGCGTGTGGACCATGGAGNCCAAGTCGGGGGAAGCGAGCGTTGCGCCGGTNGCCGTGGCGACCCAAGGCAACGNCGGCGACGGTGAGCTTTCCAGCCGAAGGCCGGGTTGGCCCAG ]
[+] EMBL AK068379 [ TGCTCCTCTTCTCCTCGCTTCGTCTTCTTCCTCCTCTCGCCTCTTCGTTGCGAGTAGAGAGATTTTTGTTGTGATTTTTGAGGGAATATTTTTGGATTTTTGGTTTATTTTTGTGTGGGTTTTTTTGGAGGTGTATTTATTTTGTTTTTTTGGTGGTGATTTATTTTTGAGAGGTTTTAAGGGATTAAGGGAGGTGTGTGAGGAAGATGGGGTTAGTGTGTGTGAGCTCCAATGGCGAGAGCTCGTGGCGGAAACCCTACTAGGTTGAGGAGGAGGAGGAGGTCGTCGTCGCGCTCGCGTGTGGACCATGGAGGCCAAGTCGGGGGAAGCGAGCGTTGCGCCGGTGGCCGTGGCGA CCGAGGCAACGGCGGCGACGGTGAGC TTCCAGCCGCAGGCGGCGGTGGCCGAGCAGGGTAGCTCGAGCGGTGGTGTGCTGGTGCCGCCGCCGCCTATGGCGGCGGGAGGAGGAGGAGTTGTGGTGGCGGCGGCGCCGGTGGCGGGGGTGGTGAAGGTGGGGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGACGGGAGCCTGATCCGGCCGCTGAACGCGACGCCGATCTCGGCGTCGGTACCCATGGCGGCCTCCGCGGTGGGGCCCTACACGCCGGCGTCGGCGGTGGGCGCCGCCATGAAGCGCGGGAGGGGTCGCCCCCTCGACTTCGCCTCCACGGCCAAGCTCCATCACCACCACCAACACCAGCACCATCACCAGCAGCAGCAGTTCGGCTTCCACTTCGACTCCATTGGTGAAATGGTGGCTTGTTCTGCTGGTGCGAATTTTACTCCTCACATCATCACTGTTGCTCCTGGAGAGGATGTGACTATGAAGGTCATATCATTTTCTCAACAAGGACCACGAGCTATCTGTATTCTATCTGCTAATGGTGTGATATCAAACGTTACACTGCGTCAACCTGATTCCTCGGGTGGCACATTAACTTACGAGGGACGTTTTGAGTTGCTATCTTTGTCTGGATCGTTTATGCCTACTGAAAACAGCGGAACACGGAGTCGGTCAGGTGGG ATG AGCGTTTC TCTTGCCAGCCC AGATGG CCGTGTTGTCGGTGGTGG AGTTGCTGGCCTTCTGGTGGCAGCAAGTCCTGTTCAGATTGTTGTCGGAAGCTTCCTACCAAGCTATCAAATGGAACAGAAGAATAAGAAGCCTAGGGTGGAAGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTGTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTGCTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCGATGTGAAGGTCACCGCCTCTGGAGCCTGAAACTGAGATGAACTGACCAGGATCCATGAAATTCCTGGTCTGTCACTGCTGCAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATCAGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTAGTTCTGTGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACTTAATTTGCTCCTGGTGTACCCCTTATTAAATTAGCATTAGAATTTTTTTT ]
[+] EMBL AU198263 [ tgggTCGCCTCCACGGCCAAGCTCCATCACCACCACCAACACCAGCACCATCACCAGCAGCAGCAGTTCGGCTTCCACTTCGACTCCATTGGTGAAATGGTGGCTTGTTCTGCTGGTGCGAATTTTACTCCTCACATCATCACTGTTGCTCCTGGAGAGGATGTGACTATGAAGGTCATATCATTTTCTCAACAAGGACCACGAGCTATCTGTATTCTATCTGCTAATGGTGTGATATCAAACGTTACACTGCGTCAACCTGATTCCTCGGGTGGCACATTAACTTACGAGGGACGTTTTGAGTTGCTATCTTTGNCTGGATCGNTTATGCCTACTGAAAACAGCGGAACACGGAGTCCGTCAGGGGGGAATGAAGCGGTTCTTTTTGCCAGCCCAAGAAGGCCCNTGTTGTCGGTGGNGGAATTTGCTGGCCc ]
[+] EMBL CA756700 [ AAGAACAACAAACATCGTAACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTGCTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCGATGTGAAGGTCACCGCCTCTGGAGCCTGAAACTGAGATGAACTGACCAGGATCCATGAAATTCCTGGTCTGTCACTGCTGCAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATCAGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTAGTTC TGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACTTAATTTGCTCCTGGTGTACCCCTTATTAAATTAGCATTAGAATTTTTTTTCACTCTAAAAAAAAAAAAAACAT]
[+] EMBL AU095519 [ ATGAAATTCCTGGTCTGTCACTGCTGCAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTNACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGNATCAGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTNGTTNCAAAAaaaaaaaa ]
consensusID : consensus_9384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence
[TGTTCCAGATTNGTTCGTCNGGAAGCTTCCTACCAAGCTATCCAAATCGGACACACGAAGANACTCACACGACACGCCCTCAGGGTCGGGCACACGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTGTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGCAACCACCCGCCGCCGCCGCCATGTCGGAGG]
[+] EMBL AU163143 [TGTTCCAGATTNGTTCGTCNGGAAGCTTCCTACCAAGCTATCCAAATCGGACACACGAAGANACTCACACGACACGCCCTCAGGGTCGGGCACACGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTGTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGCAACCACCCGCCGCCGCCGCCATGTCGGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9384#0 TTGCTGCTCCTCTTCTCCTCGCTTCGTCTTCTTCCTCCTCTCGCCTCTTCGTTGCGAGTA 60
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GAGAGATTTTTGTTGTGATTTTTGAGGGAATATTTTTGGATTTTTGGTTTATTTTTGTGT 120
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GGGTTTTTTTGGAGGTGTATTTATTTTGTTTTTTTGGTGGTGATTTATTTTTGAGAGGTT 180
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 TTAAGGGATTAAGGGAGGTGTGTGAGGAAGATGGGGTTAGTGTGTGTGAGCTCCAATGGC 240
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GAGAGCTCGTGGCGGAAACCCTACTAGGTTGAGGAGGAGGAGGAGGTCGTCGTCGCGCTC 300
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GCGTGTGGACCATGGAGNCCAAGTCGGGGGAAGCGAGCGTTGCGCCGGTNGCCGTGGCGA 360
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 CCAAGGCAACGNCGGCGACGGTGAGCTTCCAGCCGAAGGCCGGGTTGGCCCAGCAGGGTA 420
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GCTCGAGCGGTGGTGTGCTGGTGCCGCCGCCGCCTATGGCGGCGGGAGGAGGAGGAGTTG 480
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 TGGTGGCGGCGGCGCCGGTGGCGGGGGTGGTGAAGGTGGGGAAGAAGAGGGGGAGGCCGA 540
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GGAAGTATGGGCCGGACGGGAGCCTGATCCGGCCGCTGAACGCGACGCCGATCTCGGCGT 600
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 CGGTACCCATGGCGGCCTCCGCGGTGGGGCCCTACACGCCGGCGTCGGCGGTGGGCGCCG 660
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 CCATGAAGCGCGGGAGGGGTCGCCCCCTCGACTTCGCCTCCACGGCCAAGCTCCATCACC 720
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 ACCACCAACACCAGCACCATCACCAGCAGCAGCAGTTCGGCTTCCACTTCGACTCCATTG 780
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GTGAAATGGTGGCTTGTTCTGCTGGTGCGAATTTTACTCCTCACATCATCACTGTTGCTC 840
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 CTGGAGAGGATGTGACTATGAAGGTCATATCATTTTCTCAACAAGGACCACGAGCTATCT 900
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GTATTCTATCTGCTAATGGTGTGATATCAAACGTTACACTGCGTCAACCTGATTCCTCGG 960
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 GTGGCACATTAACTTACGAGGGACGTTTTGAGTTGCTATCTTTGTCTGGATCGTTTATGC 1020
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 CTACTGAAAACAGCGGAACACGGAGTCGGTCAGGTGGGATGAGCGTTTCTCTTGCCAGCC 1080
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 CAGATGGCCGTGTTGTCGGTGGTGGAGTTGCTGGCCTTCTGGTGGCAGCAAGTCCTGTTC 1140
consensus_9384#1 -------------------------------------------------TGTTCCAGATT 11
*** * *
consensus_9384#0 AGATTGTTGTCGGAAGCTTCCTACCAAGCTATC-AAATGGAACAGAAGAATAAG------ 1193
consensus_9384#1 NGTTCGTCN--GGAAGCTTCCTACCAAGCTATCCAAATCGGACACACGAAGANACTCACA 69
* * ** ********************** **** * *** * *** *
consensus_9384#0 ----AAGCC-------TAGGGTGGAAGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTG 1242
consensus_9384#1 CGACACGCCCTCAGGGTCGGGCACACGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTG 129
* *** * *** * **********************************
consensus_9384#0 TTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCC 1302
consensus_9384#1 TTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCC 189
************************************************************
consensus_9384#0 CAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTG 1362
consensus_9384#1 CAAGAACAACAAACATCGTAACCTCAGCATACAACCCAG-CAACCACCCGCCGCCGCC-G 247
*************************************** * * * * * * ** *
consensus_9384#0 CTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCGATGTGAAGGTCACCGCCTCTG 1422
consensus_9384#1 CCATGTCGGAGG------------------------------------------------ 259
* ****
consensus_9384#0 GAGCCTGAAACTGAGATGAACTGACCAGGATCCATGAAATTCCTGGTCTGTCACTGCTGC 1482
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 AGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTA 1542
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 AAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAAT 1602
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 TGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATCAGGCTACCCTGCTTCCTTGTA 1662
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 ACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTAG 1722
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 TTCTGTGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACT 1782
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 TAATTTGCTCCTGGTGTACCCCTTATTAAATTAGCATTAGAATTTTTTTTCACTCTAAAA 1842
consensus_9384#1 ------------------------------------------------------------
consensus_9384#0 AAAAAAAAAACAT 1855
consensus_9384#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||