These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1855 fasta sequence [TTGCTGCTCCTCTTCTCCTCGCTTCGTCTTCTTCCTCCTCTCGCCTCTTCGTTGCGAGTAGAGAGATTTTTGTTGTGATTTTTGAGGGAATATTTTTGGATTTTTGGTTTATTTTTGTGTGGGTTTTTTTGGAGGTGTATTTATTTTGTTTTTTTGGTGGTGATTTATTTTTGAGAGGTTTTAAGGGATTAAGGGAGGTGTGTGAGGAAGATGGGGTTAGTGTGTGTGAGCTCCAATGGCGAGAGCTCGTGGCGGAAACCCTACTAGGTTGAGGAGGAGGAGGAGGTCGTCGTCGCGCTCGCGTGTGGACCATGGAGNCCAAGTCGGGGGAAGCGAGCGTTGCGCCGGTNGCCGTGGCGA-CCAAGGCAACGNCGGCGACGGTGAGC-TTCCAGCCGAAGGCCGGGTTGGCCCAGCAGGGTAGCTCGAGCGGTGGTGTGCTGGTGCCGCCGCCGCCTATGGCGGCGGGAGGAGGAGGAGTTGTGGTGGCGGCGGCGCCGGTGGCGGGGGTGGTGAAGGTGGGGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGACGGGAGCCTGATCCGGCCGCTGAACGCGACGCCGATCTCGGCGTCGGTACCCATGGCGGCCTCCGCGGTGGGGCCCTACACGCCGGCGTCGGCGGTGGGCGCCGCCATGAAGCGCGGGAGGGGTCGCCCCCTCGACTTCGCCTCCACGGCCAAGCTCCATCACCACCACCAACACCAGCACCATCACCAGCAGCAGCAGTTCGGCTTCCACTTCGACTCCATTGGTGAAATGGTGGCTTGTTCTGCTGGTGCGAATTTTACTCCTCACATCATCACTGTTGCTCCTGGAGAGGATGTGACTATGAAGGTCATATCATTTTCTCAACAAGGACCACGAGCTATCTGTATTCTATCTGCTAATGGTGTGATATCAAACGTTACACTGCGTCAACCTGATTCCTCGGGTGGCACATTAACTTACGAGGGACGTTTTGAGTTGCTATCTTTGTCTGGATCGTTTATGCCTACTGAAAACAGCGGAACACGGAGTCGGTCAGGTGGG-ATG-AGCGTTTC-TCTTGCCAGCCC-AGATGG-CCGTGTTGTCGGTGGTGG-AGTTGCTGGCCTTCTGGTGGCAGCAAGTCCTGTTCAGATTGTTGTCGGAAGCTTCCTACCAAGCTATCAAATGGAACAGAAGAATAAGAAGCCTAGGGTGGAAGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTGTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTGCTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCGATGTGAAGGTCACCGCCTCTGGAGCCTGAAACTGAGATGAACTGACCAGGATCCATGAAATTCCTGGTCTGTCACTGCTGCAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATCAGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTAGTTCTGTGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACTTAATTTGCTCCTGGTGTACCCCTTATTAAATTAGCATTAGAATTTTTTTTCACTCTAAAAAAAAAAAAAACAT] [+] EMBL AU032101 [TTGCTGCTCCTCTTCTCCTCGCTTCGTCTTCTTCCTCCTCTCGCCTCTTCGTTGCGAGTAGAGAGATTTTTGTTGTGATTTTTGAGGGAATATTTTTGGATTTTTGGTTTATTTTTGTGTGGGTTTTTTTGGAGGTGTATTTATTTTGTTTTTTTGGTGGTGATTTATTTTTGAGAGGTTTTAAGGGATTAAGGGAGGTGTGTGAGGAAGATGGGGTTAGTGTGTGTGAGCTCCAATGGCGAGAGCTCGTGGCGGAAACCCTACTAGGTTGAGGAGGAGGAGGAGGTCGTCGTCGCGCTCGCGTGTGGACCATGGAGNCCAAGTCGGGGGAAGCGAGCGTTGCGCCGGTNGCCGTGGCGACCCAAGGCAACGNCGGCGACGGTGAGCTTTCCAGCCGAAGGCCGGGTTGGCCCAG ] [+] EMBL AK068379 [ TGCTCCTCTTCTCCTCGCTTCGTCTTCTTCCTCCTCTCGCCTCTTCGTTGCGAGTAGAGAGATTTTTGTTGTGATTTTTGAGGGAATATTTTTGGATTTTTGGTTTATTTTTGTGTGGGTTTTTTTGGAGGTGTATTTATTTTGTTTTTTTGGTGGTGATTTATTTTTGAGAGGTTTTAAGGGATTAAGGGAGGTGTGTGAGGAAGATGGGGTTAGTGTGTGTGAGCTCCAATGGCGAGAGCTCGTGGCGGAAACCCTACTAGGTTGAGGAGGAGGAGGAGGTCGTCGTCGCGCTCGCGTGTGGACCATGGAGGCCAAGTCGGGGGAAGCGAGCGTTGCGCCGGTGGCCGTGGCGA CCGAGGCAACGGCGGCGACGGTGAGC TTCCAGCCGCAGGCGGCGGTGGCCGAGCAGGGTAGCTCGAGCGGTGGTGTGCTGGTGCCGCCGCCGCCTATGGCGGCGGGAGGAGGAGGAGTTGTGGTGGCGGCGGCGCCGGTGGCGGGGGTGGTGAAGGTGGGGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGACGGGAGCCTGATCCGGCCGCTGAACGCGACGCCGATCTCGGCGTCGGTACCCATGGCGGCCTCCGCGGTGGGGCCCTACACGCCGGCGTCGGCGGTGGGCGCCGCCATGAAGCGCGGGAGGGGTCGCCCCCTCGACTTCGCCTCCACGGCCAAGCTCCATCACCACCACCAACACCAGCACCATCACCAGCAGCAGCAGTTCGGCTTCCACTTCGACTCCATTGGTGAAATGGTGGCTTGTTCTGCTGGTGCGAATTTTACTCCTCACATCATCACTGTTGCTCCTGGAGAGGATGTGACTATGAAGGTCATATCATTTTCTCAACAAGGACCACGAGCTATCTGTATTCTATCTGCTAATGGTGTGATATCAAACGTTACACTGCGTCAACCTGATTCCTCGGGTGGCACATTAACTTACGAGGGACGTTTTGAGTTGCTATCTTTGTCTGGATCGTTTATGCCTACTGAAAACAGCGGAACACGGAGTCGGTCAGGTGGG ATG AGCGTTTC TCTTGCCAGCCC AGATGG CCGTGTTGTCGGTGGTGG AGTTGCTGGCCTTCTGGTGGCAGCAAGTCCTGTTCAGATTGTTGTCGGAAGCTTCCTACCAAGCTATCAAATGGAACAGAAGAATAAGAAGCCTAGGGTGGAAGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTGTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTGCTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCGATGTGAAGGTCACCGCCTCTGGAGCCTGAAACTGAGATGAACTGACCAGGATCCATGAAATTCCTGGTCTGTCACTGCTGCAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATCAGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTAGTTCTGTGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACTTAATTTGCTCCTGGTGTACCCCTTATTAAATTAGCATTAGAATTTTTTTT ] [+] EMBL AU198263 [ tgggTCGCCTCCACGGCCAAGCTCCATCACCACCACCAACACCAGCACCATCACCAGCAGCAGCAGTTCGGCTTCCACTTCGACTCCATTGGTGAAATGGTGGCTTGTTCTGCTGGTGCGAATTTTACTCCTCACATCATCACTGTTGCTCCTGGAGAGGATGTGACTATGAAGGTCATATCATTTTCTCAACAAGGACCACGAGCTATCTGTATTCTATCTGCTAATGGTGTGATATCAAACGTTACACTGCGTCAACCTGATTCCTCGGGTGGCACATTAACTTACGAGGGACGTTTTGAGTTGCTATCTTTGNCTGGATCGNTTATGCCTACTGAAAACAGCGGAACACGGAGTCCGTCAGGGGGGAATGAAGCGGTTCTTTTTGCCAGCCCAAGAAGGCCCNTGTTGTCGGTGGNGGAATTTGCTGGCCc ] [+] EMBL CA756700 [ AAGAACAACAAACATCGTAACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTGCTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCGATGTGAAGGTCACCGCCTCTGGAGCCTGAAACTGAGATGAACTGACCAGGATCCATGAAATTCCTGGTCTGTCACTGCTGCAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATCAGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTAGTTC TGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACTTAATTTGCTCCTGGTGTACCCCTTATTAAATTAGCATTAGAATTTTTTTTCACTCTAAAAAAAAAAAAAACAT] [+] EMBL AU095519 [ ATGAAATTCCTGGTCTGTCACTGCTGCAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTNACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGNATCAGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTNGTTNCAAAAaaaaaaaa ] consensusID : consensus_9384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [TGTTCCAGATTNGTTCGTCNGGAAGCTTCCTACCAAGCTATCCAAATCGGACACACGAAGANACTCACACGACACGCCCTCAGGGTCGGGCACACGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTGTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGCAACCACCCGCCGCCGCCGCCATGTCGGAGG] [+] EMBL AU163143 [TGTTCCAGATTNGTTCGTCNGGAAGCTTCCTACCAAGCTATCCAAATCGGACACACGAAGANACTCACACGACACGCCCTCAGGGTCGGGCACACGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTGTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGCAACCACCCGCCGCCGCCGCCATGTCGGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9384#0 TTGCTGCTCCTCTTCTCCTCGCTTCGTCTTCTTCCTCCTCTCGCCTCTTCGTTGCGAGTA 60 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GAGAGATTTTTGTTGTGATTTTTGAGGGAATATTTTTGGATTTTTGGTTTATTTTTGTGT 120 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GGGTTTTTTTGGAGGTGTATTTATTTTGTTTTTTTGGTGGTGATTTATTTTTGAGAGGTT 180 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 TTAAGGGATTAAGGGAGGTGTGTGAGGAAGATGGGGTTAGTGTGTGTGAGCTCCAATGGC 240 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GAGAGCTCGTGGCGGAAACCCTACTAGGTTGAGGAGGAGGAGGAGGTCGTCGTCGCGCTC 300 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GCGTGTGGACCATGGAGNCCAAGTCGGGGGAAGCGAGCGTTGCGCCGGTNGCCGTGGCGA 360 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 CCAAGGCAACGNCGGCGACGGTGAGCTTCCAGCCGAAGGCCGGGTTGGCCCAGCAGGGTA 420 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GCTCGAGCGGTGGTGTGCTGGTGCCGCCGCCGCCTATGGCGGCGGGAGGAGGAGGAGTTG 480 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 TGGTGGCGGCGGCGCCGGTGGCGGGGGTGGTGAAGGTGGGGAAGAAGAGGGGGAGGCCGA 540 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GGAAGTATGGGCCGGACGGGAGCCTGATCCGGCCGCTGAACGCGACGCCGATCTCGGCGT 600 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 CGGTACCCATGGCGGCCTCCGCGGTGGGGCCCTACACGCCGGCGTCGGCGGTGGGCGCCG 660 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 CCATGAAGCGCGGGAGGGGTCGCCCCCTCGACTTCGCCTCCACGGCCAAGCTCCATCACC 720 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 ACCACCAACACCAGCACCATCACCAGCAGCAGCAGTTCGGCTTCCACTTCGACTCCATTG 780 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GTGAAATGGTGGCTTGTTCTGCTGGTGCGAATTTTACTCCTCACATCATCACTGTTGCTC 840 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 CTGGAGAGGATGTGACTATGAAGGTCATATCATTTTCTCAACAAGGACCACGAGCTATCT 900 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GTATTCTATCTGCTAATGGTGTGATATCAAACGTTACACTGCGTCAACCTGATTCCTCGG 960 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 GTGGCACATTAACTTACGAGGGACGTTTTGAGTTGCTATCTTTGTCTGGATCGTTTATGC 1020 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 CTACTGAAAACAGCGGAACACGGAGTCGGTCAGGTGGGATGAGCGTTTCTCTTGCCAGCC 1080 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 CAGATGGCCGTGTTGTCGGTGGTGGAGTTGCTGGCCTTCTGGTGGCAGCAAGTCCTGTTC 1140 consensus_9384#1 -------------------------------------------------TGTTCCAGATT 11 *** * * consensus_9384#0 AGATTGTTGTCGGAAGCTTCCTACCAAGCTATC-AAATGGAACAGAAGAATAAG------ 1193 consensus_9384#1 NGTTCGTCN--GGAAGCTTCCTACCAAGCTATCCAAATCGGACACACGAAGANACTCACA 69 * * ** ********************** **** * *** * *** * consensus_9384#0 ----AAGCC-------TAGGGTGGAAGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTG 1242 consensus_9384#1 CGACACGCCCTCAGGGTCGGGCACACGCGGCACCCGCCCTTGCACAGACTCCTCCTGCTG 129 * *** * *** * ********************************** consensus_9384#0 TTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCC 1302 consensus_9384#1 TTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCC 189 ************************************************************ consensus_9384#0 CAAGAACAACAAACATCGTAACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTG 1362 consensus_9384#1 CAAGAACAACAAACATCGTAACCTCAGCATACAACCCAG-CAACCACCCGCCGCCGCC-G 247 *************************************** * * * * * * ** * consensus_9384#0 CTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCGATGTGAAGGTCACCGCCTCTG 1422 consensus_9384#1 CCATGTCGGAGG------------------------------------------------ 259 * **** consensus_9384#0 GAGCCTGAAACTGAGATGAACTGACCAGGATCCATGAAATTCCTGGTCTGTCACTGCTGC 1482 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 AGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTA 1542 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 AAAGATGTATCTGAGTTCCAGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAAT 1602 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 TGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATCAGGCTACCCTGCTTCCTTGTA 1662 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 ACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTAG 1722 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 TTCTGTGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACT 1782 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 TAATTTGCTCCTGGTGTACCCCTTATTAAATTAGCATTAGAATTTTTTTTCACTCTAAAA 1842 consensus_9384#1 ------------------------------------------------------------ consensus_9384#0 AAAAAAAAAACAT 1855 consensus_9384#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||