These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9396#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1275 fasta sequence [AGAGGCGGCCACGCGGCGGCGGCTGCTGGGGTAAGCTCTGGGTCCGAGGATGACGACGAGGAGGCCGGCTTCTCCAGGAGCTACTTCCTGGCCAAGGAGAAGGAGCCCTCCTCCGGCAAGAAGCGCGCCCGCGCCGCCGGCAAGCTCTCCGACCTCAACCTCGTCGACGAGCAGGTGCTGCGAGCATCCCTCGCTGAGATCCCCCCGAAGCACGAGAGAGAGGTGGAGGCTCTGACGAGAAGCTACAAGGAGCAGTACCGTAACTGGCTGTTCGAGCTCAGGTGCGGATTTGGGCTCCTGATGTATGGATTTGGATCTAAGAAGATGTTGCTTGAGGATTTTGCGTCCACGACCTTGAGCGATTTCACCGTCATTGTGGTTAATGGCTATCTCCCTTCCATCAACTTGAAGCAAGTCATAGTGACAGTAGCTGAAATATTTTGGGAACAAACAAAACTTAAGAGAAAACGCCAGACAGCAACAAGGTCCCAGTTGCAGCCATTTGCATCCCAATCAATAGATGATATTATCTCCTTTCTAAATGACCAGACATCTGACAATGGGGATGACAATGTATGCCTTCTTATTCACAACATCGACGGACCTGCCTTGCGTGACGCTGAATCACAGCAGTACCTAGCTCAAGTTTCGTGCTGCCCGCAAGTCCATGTTGTCGCATCAGTAGATCATGTTAATGCACCTTTGTTATGGGACAAGAAGTTGGTGCACACACAGTTCAAGTGGAGCTGGTATCACGTCCCAACGTTTGCACCTTACAAAGTTGAAGGTGTGTTCTACCCCTTGATTCTTGCCAGCGGCGGTCATGCCCAAACCATGAAAACCGCCCTCGTTGTTCTGCAAAGCCTGACACCAAATGCGCAAAGTGT-CTTCAGAG-TTCTTGCT-GAATATC-AGTTGGCACACGAG-AAGGAGGAAGGTATGCATTTCAGTAGCTTGTATACC-AAATGCCGTGAGCGTTTTCTTGTAAGCAGTCAAGTGACGCTGAACTCCCACCTGACGGAGTTTAAAGACCATGATCTGGTGAAGATCAGAAAGCACTCTGATGGCCAAGATTGCCTCCACATTCCTCTTGTTTCTGATGCGCTGGAGAAATTGCTTCAGGAATTGACCTGACCAGCTGGGTTTGGAATTTTTTTTTAATTGATCGANCGGTCAGTGATCACCATGGAAACAGCTCAGTTGTGTATTCCAATCTGTAGTTGTATATGGATTANTCACCATTTCAGTTTATCAAATAGCTGCTTGTGTCAAAAAAAA] [+] EMBL AB104466 [AGAGGCGGCCACGCGGCGGCGGCTGCTGGGGTAAGCTCTGGGTCCGAGGATGACGACGAGGAGGCCGGCTTCTCCAGGAGCTACTTCCTGGCCAAGGAGAAGGAGCCCTCCTCCGGCAAGAAGCGCGCCCGCGCCGCCGGCAAGCTCTCCGACCTCAACCTCGTCGACGAGCAGGTGCTGCGAGCATCCCTCGCTGAGATCCCCCCGAAGCACGAGAGAGAGGTGGAGGCTCTGACGAGAAGCTACAAGGAGCAGTACCGTAACTGGCTGTTCGAGCTCAGGTGCGGATTTGGGCTCCTGATGTATGGATTTGGATCTAAGAAGATGTTGCTTGAGGATTTTGCGTCCACGACCTTGAGCGATTTCACCGTCATTGTGGTTAATGGCTATCTCCCTTCCATCAACTTGAAGCAAGTCATAGTGACAGTAGCTGAAATATTTTGGGAACAAACAAAACTTAAGAGAAAACGCCAGACAGCAACAAGGTCCCAGTTGCAGCCATTTGCATCCCAATCAATAGATGATATTATCTCCTTTCTAAATGACCAGACATCTGACAATGGGGATGACAATGTATGCCTTCTTATTCACAACATCGACGGACCTGCCTTGCGTGACGCTGAATCACAGCAGTACCTAGCTCAAGTTTCGTGCTGCCCGCAAGTCCATGTTGTCGCATCAGTAGATCATGTTAATGCACCTTTGTTATGGGACAAGAAGTTGGTGCACACACAGTTCAAGTGGAGCTGGTATCACGTCCCAACGTTTGCACCTTACAAAGTTGAAGGTGTGTTCTACCCCTTGATTCTTGCCAGCGGCGGTCATGCCCAAACCATGAAAACCGCCCTCGTTGTTCTGCAAAGCCTGACACCAAATGCGCAAAGTGT CTTCAGAG TTCTTGCT GAATATC AGTTGGCACACGAG AAGGAGGAAGGTATGCATTTCAGTAGCTTGTATACC AAATGCCGTGAGCGCTTTCTTGTAAGCAGTCAAGTGACGCTGAATTCCCACCTGACGGAGTTTAAAGACCATGATCTGGTGAAGATCAGAAAGCACTCTGATGGCCAAGATTGCCTCCACATTCCTCTTGTTTCTGATGCGCTGGAGAAATTGCTTCAGGA ] [+] EMBL AF140487 [ GGCTGTTCGAGCTCAGGTGCGGATTTGGGCTCCTGATGTATGGATTTGGATCTAAGAAGATGTTGCTTGAGGATTTTGCGTCCACGACCTTGAGCGATTTCACCGTCATTGTGGTTAATGGCTATCTCCCTTCCATCAACTTGAAGCAAGTCATAGTGACAATAGCTGAAATATTTTGGGAACAAACAAAACTTAAGAGAAAACGCCAGACAGCAACAAGGTCCCAGTTGCAGCCATTTGCATCCCAATCAATAGATGATATTATCTCCTTTCTAAATAACCAGACATCTGACAATGGGGATGACAATGTATGCCTTCTTATTCACAACATCGACGGACCTGCCTTGCGTGACGCTGAA ] [+] EMBL AU032949 [ gAAACCNCCCNCG TGTTCTGCAAA CCTG CNNCNAATGCGCAAAGTGTCCTAAANAGNTCCTTGCTGGAATATCAAGTTGGCACACGAGAAAGGAGGAAGGTATGCATTTCAGTAGCTTGTATACCAAAATGCCGTGAGCGTTTTCTTGTAAGCAGTCAAGTGACGCTGAACTCCCACCTGACGGAGTTTAAAGACCATGATCTGGTGAAGATCAGAAAGCACTCTGATGGCCAAGATTGCCTCCACATTCCTCTTGTTTCTGATGCGCTGGAGAAATTGCTTCAGGAATTGACCTGACCAGCTGGGTTTGGAATTTTTTTTTAATTGATCGANCGGTCAGTGATCACCATGGAAACAGCTCAGTTGTGTATTCCAATCTGTAGTTGTATATGGATTANTCACCATTTCAGTTTATCAAATAGCTGCTTGTGTCAAAAAAAA] [+] EMBL CB000646 [ TTGTTCTGCAAAGCCTGACACCAAATGCGCAAAGTGT CTTCAGAG TTCTTGCT GAATATC AGTTGGCACACGAG AAGGAGGAAGGTATGCATTTCAGTAGCTTGTATACC AAATGCCGTGAGCGTTTTCTTGTAAGCAGTCAAGTGACGCTGAACTCCCACCTGACGGAGTTTAAAGACCATGATCTGGTGAAGATCAGAAAGCACTCTGATGGCCAAGATTGCCTCCACATTCCTCTTGTTTCTGATGCGCTGGAGAAATTGCTTCAGGAATTGACCTGACCAGCTGGGTTTGGAATTTTTTTTTAATTGATCGAGCGGTCAGTGATCACCATGGAAACAGCTCAGTTGTGTATTCCAATCTGTAGTTGTATATGGATTATTCACCATTTCAGTTTATCAAATA ] consensusID : consensus_9396#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [CCTAGCTCAAGTTTCGTGCTGCCCGCAAGTCCATGTTGTCGCATCAGTAGATCATGTTAATGCACCTTTGTTATGGGACAAGAAGATGGTGCACACACAGTTCAAGTGGAGCTGGTATCACGTCCCAACGTTTGCCCCTTTCAAAATTGAAGGTGCGTTTTTCCCCTTGATTTTTGCCAACGGCGGTCATGCCCCAACCATGAAAACCGCCCTTGTTGTTTTGCAAAGCCTGACCCCAAATGCGCAAAGTGTTTTTAGAGTTTTTGCTGAATATCAGTTGGCCCCCCAGAAGGAGGAAGGTATGCCTTTCAGTAGCTTGTATACCAAATGCCGTGAGCGTTTTTTTGTAAACAGTCAAGTGACCCTGAACTCCCCCCTGGCGGAGTTTAAAGACCCTGATTTGGTGAAGATCAGAAAGCCCTTTGATGGCCAAAATTGCCTCCCCCTTCCTCTTGTTTTTGATGCGCTGGAGAAATTGCTTCAGGAATTGACCTGACCAACTGGGTTTGGATTTTTTTTTTTAATTGATCGAACGGTCAGTGATCCCCATGGAAACAGCTCAGTTGTGTATTCCCATCTGTAGTTGTATATGGATTATTCCCCCTTTCAGTTTATCAAAAAACTGCTTGTGTCCTGAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759483 [CCTAGCTCAAGTTTCGTGCTGCCCGCAAGTCCATGTTGTCGCATCAGTAGATCATGTTAATGCACCTTTGTTATGGGACAAGAAGATGGTGCACACACAGTTCAAGTGGAGCTGGTATCACGTCCCAACGTTTGCCCCTTTCAAAATTGAAGGTGCGTTTTTCCCCTTGATTTTTGCCAACGGCGGTCATGCCCCAACCATGAAAACCGCCCTTGTTGTTTTGCAAAGCCTGACCCCAAATGCGCAAAGTGTTTTTAGAGTTTTTGCTGAATATCAGTTGGCCCCCCAGAAGGAGGAAGGTATGCCTTTCAGTAGCTTGTATACCAAATGCCGTGAGCGTTTTTTTGTAAACAGTCAAGTGACCCTGAACTCCCCCCTGGCGGAGTTTAAAGACCCTGATTTGGTGAAGATCAGAAAGCCCTTTGATGGCCAAAATTGCCTCCCCCTTCCTCTTGTTTTTGATGCGCTGGAGAAATTGCTTCAGGAATTGACCTGACCAACTGGGTTTGGATTTTTTTTTTTAATTGATCGAACGGTCAGTGATCCCCATGGAAACAGCTCAGTTGTGTATTCCCATCTGTAGTTGTATATGGATTATTCCCCCTTTCAGTTTATCAAAAAACTGCTTGTGTCCTGAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9396#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TCTGGCAAGAAGCGCGCCCGGCGCCGGCAAGCTCTCCGACCTCAACCTCGTCGACGAGCAGGTGCTGCGAGCATCCCTCGCTGAGATCCCCCCGAAGCACGAGAGAGAGGTGGAGGCTCTGNCGAGAAGCTACAAGGAGCAGTACCGCAACTGGCTGTTCGAGCTCAGGTGCGGATTTGGGCTCCTGATGTATGGATTTGGATCTAAGAAGATGTTGCTTGAGGATTTTGCGTCCACGACCTTGAGCGATTTCACCGTCATTGTGGTTAATGGCTATCTCCCTTNCATCAACTTGAAGCAAGTCATAGTGACAATAGCTGAAATATTTTTGGGACAAACAAAACTTAAGNGAAAACGCCAGACAGCAACANGTACCTTAG] [+] EMBL AU066036 [TCTGGCAAGAAGCGCGCCCGGCGCCGGCAAGCTCTCCGACCTCAACCTCGTCGACGAGCAGGTGCTGCGAGCATCCCTCGCTGAGATCCCCCCGAAGCACGAGAGAGAGGTGGAGGCTCTGNCGAGAAGCTACAAGGAGCAGTACCGCAACTGGCTGTTCGAGCTCAGGTGCGGATTTGGGCTCCTGATGTATGGATTTGGATCTAAGAAGATGTTGCTTGAGGATTTTGCGTCCACGACCTTGAGCGATTTCACCGTCATTGTGGTTAATGGCTATCTCCCTTNCATCAACTTGAAGCAAGTCATAGTGACAATAGCTGAAATATTTTTGGGACAAACAAAACTTAAGNGAAAACGCCAGACAGCAACANGTACCTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9396#0 ------------------------------------------------------------ consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 CCTAGCTCAAGTTTCGTGCTGCCCGCAAGTCCATGTTGTCGCATCAGTAGATCATGTTAA 60 consensus_9396#0 ---------------AGAGGCGGCCACGCGGCGGCGGCTGCTGGGGTAAGCTCTGGGTCC 45 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 TGCACCTTTGTTATGGGACAAGAAGATGGTGCACACACAGTTCAAGTGGAGCTGGTATCA 120 consensus_9396#0 GAGGATGACGACGAGGAGGCCGGCTTCTCCAGGAGCTACTTCCTGGCCAAGGAGAAGGAG 105 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 CGTCCCAACGTTTGCCCCTTTCAAAATTGAAGGTGCGTTTTTCCCCTTGATTTTTGCCAA 180 consensus_9396#0 CCCTCCTCCGGCAAGAAGCGCGCCCGCGCCGCCGGCAAGCTCTCCGACCTCAACCTCGTC 165 consensus_9396#2 ------TCTGGCAAGAAGCGCGCCCGG--CGCCGGCAAGCTCTCCGACCTCAACCTCGTC 52 consensus_9396#1 CGGCGGTCATGCCCCAACCATGAAAACCGCCCTTGTTGTTTTGCAAAGCCTGACCCCAAA 240 ** ** ** * * * * * * * * * *** * consensus_9396#0 GACGAGCAGGTGCTGCGAGCATCCCTCGCTGAGATCCCCCCGAAGCACGAGAGAGAGGTG 225 consensus_9396#2 GACGAGCAGGTGCTGCGAGCATCCCTCGCTGAGATCCCCCCGAAGCACGAGAGAGAGGTG 112 consensus_9396#1 TGCGCA-AAGTGTTTTTAGAGTTTTT-GCTGAATATCAGTTGGCCCCCCAGAAGGAGGAA 298 ** * *** * ** * * ***** * * * * *** **** consensus_9396#0 GAGGCTCTGACGAGAAGCTACAAGGAGCAGTACCGTAACTGGCTGTTCGAGCTCAGGT-- 283 consensus_9396#2 GAGGCTCTGNCGAGAAGCTACAAGGAGCAGTACCGCAACTGGCTGTTCGAGCTCAGGT-- 170 consensus_9396#1 GGTATGCCTTTCAGTAGCTTGTATACCAAATGCCGTGAGCGTTTTTTTGTAAACAGTCAA 358 * * ** **** * * * *** * * * ** * *** consensus_9396#0 GCGGATTTGGGCTCCTGATGTATGGATTTGGA----TCTAAGAAGATGTTGCTTGAGGA- 338 consensus_9396#2 GCGGATTTGGGCTCCTGATGTATGGATTTGGA----TCTAAGAAGATGTTGCTTGAGGA- 225 consensus_9396#1 GTGACCCTGAACTCCCCCCTGGCGGAGTTTAAAGACCCTGATTTGGTGAAGATCAGAAAG 418 * * ** **** *** ** * ** * * ** * * * consensus_9396#0 ---TTTTGCGTCCACGACCTTGAGCGATTTCACCGTCATTGTGGT-TAATGGCTATCTCC 394 consensus_9396#2 ---TTTTGCGTCCACGACCTTGAGCGATTTCACCGTCATTGTGGT-TAATGGCTATCTCC 281 consensus_9396#1 CCCTTTGATGGCCAAAATTGCCTCCCCCTTCCTCTTGTTTTTGATGCGCTGGAGAAATTG 478 *** * *** * * *** * * ** ** * *** * * consensus_9396#0 CTTCC---ATCAACTTGA--AGCAAGTCATAGTGACAGTAGCTGAAATATTTTGGGAACA 449 consensus_9396#2 CTTNC---ATCAACTTGA--AGCAAGTCATAGTGACAATAGCTGAAATATTTTTGGGACA 336 consensus_9396#1 CTTCAGGAATTGACCTGACCAACTGGGTTTGGATTTTTTTTTTTAATTGATCGAACGGTC 538 *** ** ** *** * * * * * * * ** * * consensus_9396#0 AACAAAACTTAAGAGAAAACGCCAGACAGCAACAAG-GTCC-CAGTTGCAGCCATTTGCA 507 consensus_9396#2 AACAAAACTTAAGNGAAAACGCCAGACAGCAACANGTACCT-TAG--------------- 380 consensus_9396#1 AGTGATCCCCATGGAAACAGCTCAGTTGTGTATTCCCATCTGTAGTTGTATATGGATTAT 598 * * * * * ** * *** * * ** consensus_9396#0 TCCCAATCAATAGATGATATTATCTCCTTTCTAAATGACCAGACATCTGACAATGGGGAT 567 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 TCCCCCTTTCAGTTTATCAAAAAACTGCTTGTGTCCTGAAAAAAAAAAAAAAAAAAAAAA 658 consensus_9396#0 GACAATGTATGCCTTCTTATTCACAACATCGACGGACCTGCCTTGCGTGACGCTGAATCA 627 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 CAGCAGTACCTAGCTCAAGTTTCGTGCTGCCCGCAAGTCCATGTTGTCGCATCAGTAGAT 687 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 CATGTTAATGCACCTTTGTTATGGGACAAGAAGTTGGTGCACACACAGTTCAAGTGGAGC 747 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 TGGTATCACGTCCCAACGTTTGCACCTTACAAAGTTGAAGGTGTGTTCTACCCCTTGATT 807 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 CTTGCCAGCGGCGGTCATGCCCAAACCATGAAAACCGCCCTCGTTGTTCTGCAAAGCCTG 867 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 ACACCAAATGCGCAAAGTGTCTTCAGAGTTCTTGCTGAATATCAGTTGGCACACGAGAAG 927 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 GAGGAAGGTATGCATTTCAGTAGCTTGTATACCAAATGCCGTGAGCGTTTTCTTGTAAGC 987 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 AGTCAAGTGACGCTGAACTCCCACCTGACGGAGTTTAAAGACCATGATCTGGTGAAGATC 1047 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 AGAAAGCACTCTGATGGCCAAGATTGCCTCCACATTCCTCTTGTTTCTGATGCGCTGGAG 1107 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 AAATTGCTTCAGGAATTGACCTGACCAGCTGGGTTTGGAATTTTTTTTTAATTGATCGAN 1167 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 CGGTCAGTGATCACCATGGAAACAGCTCAGTTGTGTATTCCAATCTGTAGTTGTATATGG 1227 consensus_9396#2 ------------------------------------------------------------ consensus_9396#1 ------------------------------------------------------------ consensus_9396#0 ATTANTCACCATTTCAGTTTATCAAATAGCTGCTTGTGTCAAAAAAAA 1275 consensus_9396#2 ------------------------------------------------ consensus_9396#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||