cluster # 9398

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Oryza sativa
cluster # 9398 cluster # 9398 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9398#0 length = 664 sequences # 4

consensus_9398#1 length = 658 sequences # 1
consensus_9398#2 length = 293 sequences # 1

consensusID : consensus_9398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 664
fasta sequence

                              [TTCACTATTTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGATATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCTGCAAAATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCCATGAGTTTAAGTTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTNATGACGGTATAAGTACAACAGTTTACTCATTTGAATAGCTGTCGGCGAAGTCTTTAATNCTTCTCTTGATAGTCTGCAACTCTTCGNGAAGCAGTGAAAAGACCTTCTTCAT]

[-] EMBL AK060541             [  CACTATCCCTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGATATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL C98199               [tttttttTTTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTACTGCAGANATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGCAAAAGCATCTACAAAGGGNACCACCTGGTCACATTGCCAATCTACCTGCAAAATTGTGTTGNAACGCCGAATCGAATATTACCTCTGn                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AU108624             [        TTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGATATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGANGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCTGCAAAATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCCATGAGTTTAAGTTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTNATGACGGTATAAGTACAACAGTTTACTCATTTGAATAGCTGTCGGCGAAGTCTTTAATNCTTCTCTTGATAGTCTGCAACTCTTCGNGAAGCAGTGAAAAGACCTTCTTCAT]
[-] EMBL AU032959             [        TTTTT  TTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGATATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCTGCAAAATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCCATGAGTTTAAGTTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAAT                                                                                                                                                                                                                                                                          ]




>consensus_9398#0
TTCACTATTTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGA
TATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAA
AGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAAC
GGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCTGCAA
AATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCCATGAGTTTAAGTTTTCGCCA
GCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCAT
GATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTA
GTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAA
TGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGC
AAATGCCATGTNATGACGGTATAAGTACAACAGTTTACTCATTTGAATAGCTGTCGGCGA
AGTCTTTAATNCTTCTCTTGATAGTCTGCAACTCTTCGNGAAGCAGTGAAAAGACCTTCT
TCAT

consensusID : consensus_9398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [AAAGCGTTTCCCCCCCTCCCCGCCGGCGGCGCCGCTTGCCGCGGGGGACGATGTACAAGCTCGGCGGCCGTGGCGGCTGCCGCGGCGGCGGGGGCGGAGCCGCGAAGCGCCCGCCAGCCCCCCACGGCCGCGGCCGTGGGGCTGGCCCCTCTATCGGCGGCATGCCCGCGCCCCCCCGCGGTCGCGGCGCCGCTGCCGCCGCCGCGGCGGTGGAAGGGCCAGTCCAATGTTACCTGTGGTCCGTGAGGTTAAGGTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTTATGACGGGATAAGTACAACAGTTACTCATTTGAATAGCTGTCCGCGAAGACTTTAATTCTTCTCTTGATAGGCTGCAACTCTTCGTGAAGCACTGAAAAGACCTTCTTCATCAATTTATGCCTTGTGCCCGATTCCTGAAACAT]

[+] EMBL CB679227             [AAAGCGTTTCCCCCCCTCCCCGCCGGCGGCGCCGCTTGCCGCGGGGGACGATGTACAAGCTCGGCGGCCGTGGCGGCTGCCGCGGCGGCGGGGGCGGAGCCGCGAAGCGCCCGCCAGCCCCCCACGGCCGCGGCCGTGGGGCTGGCCCCTCTATCGGCGGCATGCCCGCGCCCCCCCGCGGTCGCGGCGCCGCTGCCGCCGCCGCGGCGGTGGAAGGGCCAGTCCAATGTTACCTGTGGTCCGTGAGGTTAAGGTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTTATGACGGGATAAGTACAACAGTTACTCATTTGAATAGCTGTCCGCGAAGACTTTAATTCTTCTCTTGATAGGCTGCAACTCTTCGTGAAGCACTGAAAAGACCTTCTTCATCAATTTATGCCTTGTGCCCGATTCCTGAAACAT]




>consensus_9398#1
AAAGCGTTTCCCCCCCTCCCCGCCGGCGGCGCCGCTTGCCGCGGGGGACGATGTACAAGC
TCGGCGGCCGTGGCGGCTGCCGCGGCGGCGGGGGCGGAGCCGCGAAGCGCCCGCCAGCCC
CCCACGGCCGCGGCCGTGGGGCTGGCCCCTCTATCGGCGGCATGCCCGCGCCCCCCCGCG
GTCGCGGCGCCGCTGCCGCCGCCGCGGCGGTGGAAGGGCCAGTCCAATGTTACCTGTGGT
CCGTGAGGTTAAGGTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATAT
CTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAAT
TTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGT
GCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATG
ACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTTATGACGGGATAAGTACAACAGTTACT
CATTTGAATAGCTGTCCGCGAAGACTTTAATTCTTCTCTTGATAGGCTGCAACTCTTCGT
GAAGCACTGAAAAGACCTTCTTCATCAATTTATGCCTTGTGCCCGATTCCTGAAACAT

consensusID : consensus_9398#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [ACCCGCCCGAATCGAATATTACCTCTGTTCCCATGAGTTCAAAGTTTTCGCNAGCTCAAGGCTGTCAGGTGGTNAGGGTATGTTCNTAATANCTTGAGCCGTGTNCCACCATCATGATTGNAACTCAGCANAGGGGTCTACCGAACTAGCAATTNCCTNAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCCCAAGCTATGNACGTGCTTCTANAAAGGCAAGCTTAATGCAAAGGTCTCAGTTTCTTCAGAGNCGATGCTGTATGACAGCCTCTGGAAANCAGTT]

[-] EMBL OS1051A              [ACCCGCCCGAATCGAATATTACCTCTGTTCCCATGAGTTCAAAGTTTTCGCNAGCTCAAGGCTGTCAGGTGGTNAGGGTATGTTCNTAATANCTTGAGCCGTGTNCCACCATCATGATTGNAACTCAGCANAGGGGTCTACCGAACTAGCAATTNCCTNAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCCCAAGCTATGNACGTGCTTCTANAAAGGCAAGCTTAATGCAAAGGTCTCAGTTTCTTCAGAGNCGATGCTGTATGACAGCCTCTGGAAANCAGTT]




>consensus_9398#2
ACCCGCCCGAATCGAATATTACCTCTGTTCCCATGAGTTCAAAGTTTTCGCNAGCTCAAG
GCTGTCAGGTGGTNAGGGTATGTTCNTAATANCTTGAGCCGTGTNCCACCATCATGATTG
NAACTCAGCANAGGGGTCTACCGAACTAGCAATTNCCTNAGCTTTCTTTCCACTAGTAAA
TGCCTTTGAATGAATATCCCAAGCTATGNACGTGCTTCTANAAAGGCAAGCTTAATGCAA
AGGTCTCAGTTTCTTCAGAGNCGATGCTGTATGACAGCCTCTGGAAANCAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9398#0      TTCACTATTTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGA 60
consensus_9398#2      ------------------------------------------------------------
consensus_9398#1      ------------------AAAGCGTTTC----CCCCCCTCCCCGCCGGCGGCGCCGCTTG 38
                                                                                  

consensus_9398#0      TATGTACAGGGCAATGGGCTTTTTCAGTAGTT----CAGTTGCGACACTGATAAGTTAAT 116
consensus_9398#2      ------------------------------------------------------------
consensus_9398#1      C-CGCGGGGGACGATGTACAAGCTCGGCGGCCGTGGCGGCTGCCGCGGCGGCGGG--GGC 95
                                                                                  

consensus_9398#0      ACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTA 176
consensus_9398#2      ------------------------------------------------------------
consensus_9398#1      GGAGCCGCGAAGCGCCCGCCAGCCCCCCACGGCCGCGGCCGTGG-GGCTGGCCCCTCTAT 154
                                                                                  

consensus_9398#0      CAACGGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCT 236
consensus_9398#2      ------------------------------------------------------------
consensus_9398#1      CGGCGGCATGCCC----GCGCCC----------CCCCGCGGTCGCGGCGCCG--CTGCCG 198
                                                                                  

consensus_9398#0      GCAAAATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCC-ATGAGTTTAA-GTTT 294
consensus_9398#2      -------------ACCCGCCCGAATCGAATATTACCTCTGTTCCCATGAGTTCAAAGTTT 47
consensus_9398#1      CCGCCGCGGCGGTGGAAGGGCCAGTCCAATGTTACCTGTGGTCC-GTGAGGTTAA-GGTT 256
                                          * * ** *** ****** ** ***  **** * ** * **

consensus_9398#0      TCGCCAGCTCA-GGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGA-TCGTGTTCC 352
consensus_9398#2      TCGCNAGCTCAAGGCTGTCAGGTGGTNAGGGTATGTTCNTAATANCTTGAGCCGTGTNCC 107
consensus_9398#1      TCGCCAGCTCA-GGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGA-TCGTGTTCC 314
                      **** ****** ************** *********** ***** *****  ***** **

consensus_9398#0      ACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCT 412
consensus_9398#2      ACCATCATGATTGNAACTCAGCANAGGGGTCTACCGAACTAGCAATTNCCTNAGCTTTCT 167
consensus_9398#1      ACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCT 374
                      ************* ** ****** ***************** ***** *** ********

consensus_9398#0      TTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGC 472
consensus_9398#2      TTCCACTAGTAAATGCCTTTGAATGAATATCCCAAGCTATGNACGTGCTTCTANAAAGGC 227
consensus_9398#1      TTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGC 434
                      ******************************* ********* *********** ******

consensus_9398#0      AAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAA 532
consensus_9398#2      AAGCTTAATGCAAAGGTCTCAGTTTCTTCAGAGNCGATGCTGTATGACAGCCTCTGGAAA 287
consensus_9398#1      AAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAA 494
                      *********** ********************* **************************

consensus_9398#0      GCAGTTGCAAATGCCATGTNATGACGGTATAAGTACAACAGTTTACTCATTTGAATAGCT 592
consensus_9398#2      NCAGTT------------------------------------------------------ 293
consensus_9398#1      GCAGTTGCAAATGCCATGTTATGACGGGATAAGTACAACAGTT-ACTCATTTGAATAGCT 553
                       *****                                                      

consensus_9398#0      GTCGGCGAAGTCTTTAATNCTTCTCTTGATAGTCTGCAACTCTTCGNGAAGCAGTGAAAA 652
consensus_9398#2      ------------------------------------------------------------
consensus_9398#1      GTCCGCGAAGACTTTAATTCTTCTCTTGATAGGCTGCAACTCTTCGTGAAGCACTGAAAA 613
                                                                                  

consensus_9398#0      GACCTTCTTCAT--------------------------------- 664
consensus_9398#2      ---------------------------------------------
consensus_9398#1      GACCTTCTTCATCAATTTATGCCTTGTGCCCGATTCCTGAAACAT 658