cluster # 9408

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Oryza sativa
cluster # 9408 cluster # 9408 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9408#0 length = 901 sequences # 4

consensus_9408#1 length = 322 sequences # 1
consensus_9408#2 length = 194 sequences # 1

consensusID : consensus_9408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 901
fasta sequence

                              [TACCTCTCTTAAAACATACATTATGACATTGCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACAATCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAAT-TGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGAAGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATATGGCCAGAAATAAT-TGAATTGCCTACGGCAACTTATTGGTCAGCGATCCA-TTTCAGGTCA-GTGA-TCTTC-TGGCAGATCATATGTACC-TCCTCTTTATTTCCTTTC-TGGTTTTCCAGATGGCCTATT-CATC-AT-CTC-TTCCTGGAGCAGAACCTGCAG-ATTTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGA-GTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTCAAACCTTTAAATATTGTCGGAATTGAAGTTCCAAAGTAAACAGTTCTCCTAGGGAGATTCCATATCCAACTCCTTGGAACATCAATCGGGTTCCGGCTTGAGTCATGATCAGCAAATACCTCATTGACTTGAAAATATGTCCCATTAAGTGGAAAGCTTCCTCTCATTGCTGTTCGGCATGGTATCAGCAGTGTCCCTCGAACTTTTTGGGCCTGCGCTTCTCTTA]

[+] EMBL CB670539             [TACCTCTCTTAAAACATACATTATGACATTGCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGACTCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACAATCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAAT TGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGAAAAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATATGGCCAGAAATAAT TGAATTGCCTACGGCAACTTATTGGTCAGCGATCCA TTTCAGGTCA GTGA TCTTC TGGCAGATCATATGTACC TCCTCTTTATTTCCTTTC TGGTTTTCCAGATGGCCTATT CATC AT CTC TTCCTGGAGCAGAACCTGCAG ATTTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGA GTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTCAAACCTTTAAATATTGTCGGAATTGAAGTTCCA                                                                                                                                                                                                 ]
[-] EMBL BI809150             [                                                             AATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCA TTTGAATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAATGTGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGAAGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATATGGCCAGAAATGATGTGAATTGCCTACGGCAACTTATGGGTCAGCGATCCATTTTCAGGTCAGGTGATTCTTCGTGGCAGATCATATGTACCTTCCTCTTTAATTCCTTTCGTGGTTTCCCAGATGGCCTATTCCATCAATCCTCTTTCGTGGAGCAGAA CTGGAGAATTTTTAATTCCTGG AAATTTG TTG T GAAAGGGGAGGTCTTG  TACAGGGGc                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB619487             [                                                                        TGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACAATCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAAT TGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGAAGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATATGGCCAGAAATAAT TGAATTGCCTACGGCAACTTATTGGTCAGCGATCCA TTTCAGGTCA GTGA TCTTC TGGCAGATCATATGTACC TCCTCTTTATTTCCTTTC TGGTTTTCCAGATGGCCTATT CATC AT CTC TTCCTGGAGCAGAACCTGCAG ATTTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGA GTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTCAAACCTTTAAATATTGTCGGAATTGAAGTTCCAAAGTAAACAGTTCTCCTAGGGAGATTCCATATCCAACTCCTTGGAACATCAATCGGGTTCCGGCTTGAGTCATGATCAGCAAATACCTCATTGACTTGAAAATATGTCCCATTAAGTGGAAAGCTTCCTCTCATTGCTGTTCGGCATGGTATCAGCAGTGTCCCTCGAACTTTTTGGGCCTGCGCTTCTCTTA]
[-] EMBL AU056357             [                                                                                                                                                                                                                                                                                                                                                                                                        ATAAN TGAAAT TCTACGGCAACTTATTGGTCAGCGATCCA TTTCAGGTCA GTGA TCTTC TGGCAGATCATATGTACC TCCTCTTTATTTCCTTTC TGGTTTTCCAGATGGCCTATT CATC AT CTC TTCCTGGAGCAGAACCTGCAG ATTTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGA GTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTC                                                                                                                                                                                                                                  ]




>consensus_9408#0
TACCTCTCTTAAAACATACATTATGACATTGCTGGCCTGCAGCTCACAAGTATCTAGAGC
CAATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACA
TGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACAA
TCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCT
CCCTATCAGCAGCAACTGTCACCGCATAAGAATTGCTTGCAACAACCAAGCATAGAATCT
GTATGATGGATCATGTTGCCGAAGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTT
CATAACTTTCAGCAGATGTATATGGCCAGAAATAATTGAATTGCCTACGGCAACTTATTG
GTCAGCGATCCATTTCAGGTCAGTGATCTTCTGGCAGATCATATGTACCTCCTCTTTATT
TCCTTTCTGGTTTTCCAGATGGCCTATTCATCATCTCTTCCTGGAGCAGAACCTGCAGAT
TTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGAGTCTTGCATACAGTGGTCTGGGT
GCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGT
ATTTCTTCAGTTGTCAAACCTTTAAATATTGTCGGAATTGAAGTTCCAAAGTAAACAGTT
CTCCTAGGGAGATTCCATATCCAACTCCTTGGAACATCAATCGGGTTCCGGCTTGAGTCA
TGATCAGCAAATACCTCATTGACTTGAAAATATGTCCCATTAAGTGGAAAGCTTCCTCTC
ATTGCTGTTCGGCATGGTATCAGCAGTGTCCCTCGAACTTTTTGGGCCTGCGCTTCTCTT
A

consensusID : consensus_9408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [TTTTTCAGGTAAATGCTGACGATTTATATCTACCTTTTCCCGACATACATTATGACATGCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTCACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAATGGCTTGCAACAACCAAGCAT]

[-] EMBL BI800881             [TTTTTCAGGTAAATGCTGACGATTTATATCTACCTTTTCCCGACATACATTATGACATGCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTCACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAATGGCTTGCAACAACCAAGCAT]




>consensus_9408#1
TTTTTCAGGTAAATGCTGACGATTTATATCTACCTTTTCCCGACATACATTATGACATGC
TGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAATA
ATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTG
AATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTCACAGTTAGA
GCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGA
ATGGCTTGCAACAACCAAGCAT

consensusID : consensus_9408#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [ATTTTGCATGGTGATGTGCGGATGGGTGCAAAATTTGAATGCAGTGCAATGTATTGTTGGATTGTTGGATGTGCACTGTGCACCACAGGTGTTGAATGTGGGGCTGCTGAAGATACTTGTGAGCTGCAGGCCAGCAATGTCATAATGTATGTCGGGAAAAGGTAGATATAAATCGTCAGCATTTACCTGAAAAA]

[+] EMBL BQ907004             [ATTTTGCATGGTGATGTGCGGATGGGTGCAAAATTTGAATGCAGTGCAATGTATTGTTGGATTGTTGGATGTGCACTGTGCACCACAGGTGTTGAATGTGGGGCTGCTGAAGATACTTGTGAGCTGCAGGCCAGCAATGTCATAATGTATGTCGGGAAAAGGTAGATATAAATCGTCAGCATTTACCTGAAAAA]




>consensus_9408#2
ATTTTGCATGGTGATGTGCGGATGGGTGCAAAATTTGAATGCAGTGCAATGTATTGTTGG
ATTGTTGGATGTGCACTGTGCACCACAGGTGTTGAATGTGGGGCTGCTGAAGATACTTGT
GAGCTGCAGGCCAGCAATGTCATAATGTATGTCGGGAAAAGGTAGATATAAATCGTCAGC
ATTTACCTGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9408#0      ------------------------------TACCTCTCTTAAAACATACATTATGACATT 30
consensus_9408#1      TTTTTCAGGTAAATGCTGACGATTTATATCTACCTTTTCCCGA-CATACATTATGACAT- 58
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      GCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAA 90
consensus_9408#1      GCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAA 118
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      TAATTGATGATTAATTTGACATCG-ACTACATGAATGACCTAACAACATGAATG-ACCAT 148
consensus_9408#1      TAATTGATGATTAATTTGACATCG-ACTACATGAATGACCTAACAACATGAATG-ACCAT 176
consensus_9408#2      -------------ATTTTGCATGGTGATGTGCGGATGGGTGCAAAATTTGAATGCAGTGC 47
                                   ****  *** *   *    * ***     * **  ****** *    

consensus_9408#0      TTTGAATGGCAAACTTTTCACATGTACAACAATCGGTTCCACTCATATGAAAGT---ACA 205
consensus_9408#1      TTTGAATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTC--ACA 234
consensus_9408#2      AATGTATTGTTGGATTGTTGGATGTGCA-CTGTGCACCACAGGTGT-TGAATGTGGGGCT 105
                        ** ** *     ** *   **** ** *  *      **    * **** **    * 

consensus_9408#0      GTTAGAGCCGCT---GAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCAC 262
consensus_9408#1      GTTAGAGCCGCT---GAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCAC 291
consensus_9408#2      GCTGAAGATACTTGTGAGCTGCAGGCCA-GCAATGTCATAATGTATGTCGGGAAAA--GG 162
                      * *  **   **   **** ** ** ** **  * **    * *  *  *  *       

consensus_9408#0      CGCATAAGAATTGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGA 322
consensus_9408#1      CGCATAAGAATGGCTTGCAACAACCAAGCAT----------------------------- 322
consensus_9408#2      TAGATATAAATCGTCAGCATTTACCTGAAAAA---------------------------- 194
                         ***  *** *   ***   ***    *                              

consensus_9408#0      AGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATA 382
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      TGGCCAGAAATAATTGAATTGCCTACGGCAACTTATTGGTCAGCGATCCATTTCAGGTCA 442
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      GTGATCTTCTGGCAGATCATATGTACCTCCTCTTTATTTCCTTTCTGGTTTTCCAGATGG 502
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      CCTATTCATCATCTCTTCCTGGAGCAGAACCTGCAGATTTTTTATTCCTGGTAATTTTGC 562
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      TTGCTGGAAAGTGGAGTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGC 622
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      CTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTCAAACCTT 682
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      TAAATATTGTCGGAATTGAAGTTCCAAAGTAAACAGTTCTCCTAGGGAGATTCCATATCC 742
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      AACTCCTTGGAACATCAATCGGGTTCCGGCTTGAGTCATGATCAGCAAATACCTCATTGA 802
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      CTTGAAAATATGTCCCATTAAGTGGAAAGCTTCCTCTCATTGCTGTTCGGCATGGTATCA 862
consensus_9408#1      ------------------------------------------------------------
consensus_9408#2      ------------------------------------------------------------
                                                                                  

consensus_9408#0      GCAGTGTCCCTCGAACTTTTTGGGCCTGCGCTTCTCTTA 901
consensus_9408#1      ---------------------------------------
consensus_9408#2      ---------------------------------------