cluster # 9412

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Oryza sativa
cluster # 9412 cluster # 9412 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9412#0 length = 1015 sequences # 5

consensus_9412#1 length = 826 sequences # 1

consensusID : consensus_9412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1015
fasta sequence

                              [ACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAATGACATCCCTTTACAAGGTGCTGTTGGATGTGCATTCCATATTTGAGTAATGTCCCAGACTTGCCAGTAGCATTTGGTTGAAAAGTTCAACTGTGCGAAATTCATAGGTCTTCTCATTTAAGTGTGCTGGTTAATTTGTACATGAAGTGTTTGTCTTATCTTCTATTCCGGAGGCCTGTTTTTACCCATTGCTAGCATCTAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAAGATGTGCTTTGCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGACTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAAAAAAAAAAAAA]

[+] EMBL AK062892             [ACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAATGACATCCCTTTACAAGGTGCTGTTGGATGTGCATTCCATATTTGAGTAATGTCCCAGACTTGCCAGTAGCATTTGGTTGAAAAGTTCAACTGTGCGAAATTCATAGGTCTTCTCATTTAAGTGTGCTGGTTAATTTGTACATGAAGTGTTTGTCTTATCTTCTATTCCGGAGGCCTGTTTTTACCCATTGCTAGCATCTAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAAGATGTGCTTTGCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGACTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATT                   ]
[-] EMBL CB672716             [                                                                                                                                                                                                                                                          CATTGCTAGCATCCAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAAGATGTGCTTTGCAGATTGCACTGATCAACTTGATTCTGGGCAAGACTGCCTAGTTACAGACTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCCCTTGGCCCATCCCATGTGTATGACCAATGTACAAAGATTTTCATGTCCAATAGGCTAACTCGTTCCTTGACTATCAGTACGCCGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTGGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGGGGAGTAAAGTGATCCTA                      ]
[-] EMBL CB664027             [                                                                                                                                                                                                                                                                                                       CTGAAGATGTGCTTGCCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGACTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGAT   GGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTT                  ]
[+] EMBL CA999827             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCT                                                                                                                                                                            ]
[+] EMBL AU056898             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GACCATCANATGTGTATGAACAATGTACAAAGATNTTCATGTACAATAGNCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATANACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAAAAAAAAAAAAA]




>consensus_9412#0
ACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGG
AAAATGACATCCCTTTACAAGGTGCTGTTGGATGTGCATTCCATATTTGAGTAATGTCCC
AGACTTGCCAGTAGCATTTGGTTGAAAAGTTCAACTGTGCGAAATTCATAGGTCTTCTCA
TTTAAGTGTGCTGGTTAATTTGTACATGAAGTGTTTGTCTTATCTTCTATTCCGGAGGCC
TGTTTTTACCCATTGCTAGCATCTAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAA
GATGTGCTTTGCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGA
CTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTT
CTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGT
ATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGG
TCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTT
TTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCAT
CACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGA
CTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAG
CGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCT
TCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACT
GAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATC
GCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAAAAAAAAAAAAA

consensusID : consensus_9412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 826
fasta sequence

                              [GTCTTTCTTCAGTAAAAACAGTTTTGGATTTTAACTTCCAAAGTGTGAATGATCTACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAATGACATCCCTTTACAAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGCCTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCCCATTTTTCTTCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTCTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAT]

[-] EMBL CB664645             [GTCTTTCTTCAGTAAAAACAGTTTTGGATTTTAACTTCCAAAGTGTGAATGATCTACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAATGACATCCCTTTACAAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGCCTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCCCATTTTTCTTCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTCTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAT]




>consensus_9412#1
GTCTTTCTTCAGTAAAAACAGTTTTGGATTTTAACTTCCAAAGTGTGAATGATCTACTAA
GGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAAT
GACATCCCTTTACAAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACA
GCCTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATC
TTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATA
GTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCA
GGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCT
TTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACC
ATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTT
GACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGA
AGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCCCATTTTT
CTTCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGA
CTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTCTATCGCGAA
TCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9412#0      ACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGG 60
consensus_9412#1      ------------------------------------------------------------
                                                                                  

consensus_9412#0      AAAATGACATCCCTTTACAAGGTGCTGTTGGATGTGCATTCCATATTTGAGTAATGTCCC 120
consensus_9412#1      ------------------------------------------------------------
                                                                                  

consensus_9412#0      AGACTTGCCAGTAGCATTTGGTTGAAAAGTTCAACTGTGCGAAATTCATAGGTCTTCTCA 180
consensus_9412#1      --------------------------------------------------GTCTTTCTTC 10
                                                                        *   ****  

consensus_9412#0      TTTAAGTGTGCTGGTTAATTTGTACATGAAGTGTTTGTCTTATCTTCTATTCCGGAGGCC 240
consensus_9412#1      AGTAAAAACAGTTTTGGATTTTAACTTCCAAAGTGTGAATGATCTACTAAGGCTCGTGCG 70
                        ***      *  *  ****  ** *  *  ** **  * **** ***   *    ** 

consensus_9412#0      TGTTTTTACCCATTGCTAGCATCTAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAA 300
consensus_9412#1      -GCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGA---ATCCAGGAAAATG----A 122
                       * *** *       *** ** **  *   *** *   *   **   ***   **    *

consensus_9412#0      GATGTGCTTTGCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGA 360
consensus_9412#1      CATCCCTTTACAAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGC 182
                       **    **   *********************************************** 

consensus_9412#0      CTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTT 420
consensus_9412#1      CTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTT 242
                      ************************************************************

consensus_9412#0      CTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGT 480
consensus_9412#1      CTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGT 302
                      ************************************************************

consensus_9412#0      ATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGG 540
consensus_9412#1      ATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGG 362
                      ************************************************************

consensus_9412#0      TCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTT 600
consensus_9412#1      TCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTT 422
                      ************************************************************

consensus_9412#0      TTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCAT 660
consensus_9412#1      TTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCAT 482
                      ************************************************************

consensus_9412#0      CACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGA 720
consensus_9412#1      CACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGA 542
                      ************************************************************

consensus_9412#0      CTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAG 780
consensus_9412#1      CTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAG 602
                      ************************************************************

consensus_9412#0      CGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCT 840
consensus_9412#1      CGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCCCATTTTTCT 662
                      ************************************************** *********

consensus_9412#0      TCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACT 900
consensus_9412#1      TCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGACT 722
                      ********************** *************************************

consensus_9412#0      GAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATC 960
consensus_9412#1      GAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTCTATCGCGAATC 782
                      ************************************************ ***********

consensus_9412#0      GCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAAAAAAAAAAAAA 1015
consensus_9412#1      GCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAT----------- 826
                      *******************************************