These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1015 fasta sequence [ACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAATGACATCCCTTTACAAGGTGCTGTTGGATGTGCATTCCATATTTGAGTAATGTCCCAGACTTGCCAGTAGCATTTGGTTGAAAAGTTCAACTGTGCGAAATTCATAGGTCTTCTCATTTAAGTGTGCTGGTTAATTTGTACATGAAGTGTTTGTCTTATCTTCTATTCCGGAGGCCTGTTTTTACCCATTGCTAGCATCTAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAAGATGTGCTTTGCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGACTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAAAAAAAAAAAAA] [+] EMBL AK062892 [ACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAATGACATCCCTTTACAAGGTGCTGTTGGATGTGCATTCCATATTTGAGTAATGTCCCAGACTTGCCAGTAGCATTTGGTTGAAAAGTTCAACTGTGCGAAATTCATAGGTCTTCTCATTTAAGTGTGCTGGTTAATTTGTACATGAAGTGTTTGTCTTATCTTCTATTCCGGAGGCCTGTTTTTACCCATTGCTAGCATCTAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAAGATGTGCTTTGCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGACTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATT ] [-] EMBL CB672716 [ CATTGCTAGCATCCAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAAGATGTGCTTTGCAGATTGCACTGATCAACTTGATTCTGGGCAAGACTGCCTAGTTACAGACTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCCCTTGGCCCATCCCATGTGTATGACCAATGTACAAAGATTTTCATGTCCAATAGGCTAACTCGTTCCTTGACTATCAGTACGCCGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTGGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGGGGAGTAAAGTGATCCTA ] [-] EMBL CB664027 [ CTGAAGATGTGCTTGCCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGACTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGAT GGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTT ] [+] EMBL CA999827 [ AAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCT ] [+] EMBL AU056898 [ GACCATCANATGTGTATGAACAATGTACAAAGATNTTCATGTACAATAGNCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATANACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAAAAAAAAAAAAA] consensusID : consensus_9412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [GTCTTTCTTCAGTAAAAACAGTTTTGGATTTTAACTTCCAAAGTGTGAATGATCTACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAATGACATCCCTTTACAAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGCCTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCCCATTTTTCTTCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTCTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAT] [-] EMBL CB664645 [GTCTTTCTTCAGTAAAAACAGTTTTGGATTTTAACTTCCAAAGTGTGAATGATCTACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGGAAAATGACATCCCTTTACAAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGCCTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCCCATTTTTCTTCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTCTATCGCGAATCGCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9412#0 ACTAAGGCTCGTGCGGCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGAATCCAGG 60 consensus_9412#1 ------------------------------------------------------------ consensus_9412#0 AAAATGACATCCCTTTACAAGGTGCTGTTGGATGTGCATTCCATATTTGAGTAATGTCCC 120 consensus_9412#1 ------------------------------------------------------------ consensus_9412#0 AGACTTGCCAGTAGCATTTGGTTGAAAAGTTCAACTGTGCGAAATTCATAGGTCTTCTCA 180 consensus_9412#1 --------------------------------------------------GTCTTTCTTC 10 * **** consensus_9412#0 TTTAAGTGTGCTGGTTAATTTGTACATGAAGTGTTTGTCTTATCTTCTATTCCGGAGGCC 240 consensus_9412#1 AGTAAAAACAGTTTTGGATTTTAACTTCCAAAGTGTGAATGATCTACTAAGGCTCGTGCG 70 *** * * **** ** * * ** ** * **** *** * ** consensus_9412#0 TGTTTTTACCCATTGCTAGCATCTAGTTGGATGGTTTTATCCATGAGGGAGGTTGCTGAA 300 consensus_9412#1 -GCTTTCAATGGAGTCTATCAGCTGCTGACATGTTCAGA---ATCCAGGAAAATG----A 122 * *** * *** ** ** * *** * * ** *** ** * consensus_9412#0 GATGTGCTTTGCAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGA 360 consensus_9412#1 CATCCCTTTACAAGATTGCACTGATCAACTTGATTTTGGGCAAGACTGCCTAGTTACAGC 182 ** ** *********************************************** consensus_9412#0 CTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTT 420 consensus_9412#1 CTGCACTTGATAAGCTTATACACAATGCTACTGGACAGCAGCTCCTTTGTAGATAATCTT 242 ************************************************************ consensus_9412#0 CTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGT 480 consensus_9412#1 CTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGT 302 ************************************************************ consensus_9412#0 ATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGG 540 consensus_9412#1 ATCATATGTTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGG 362 ************************************************************ consensus_9412#0 TCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTT 600 consensus_9412#1 TCAGAGGACAAAAGTGTTAATTAGTGTGCTAACCAAGAAATCAGCCAGTGGTGTCTCTTT 422 ************************************************************ consensus_9412#0 TTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCAT 660 consensus_9412#1 TTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAATCACTTGGACCAT 482 ************************************************************ consensus_9412#0 CACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGA 720 consensus_9412#1 CACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGA 542 ************************************************************ consensus_9412#0 CTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAG 780 consensus_9412#1 CTATCAGTACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAG 602 ************************************************************ consensus_9412#0 CGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCACATTTTTCT 840 consensus_9412#1 CGTTTGTCTTGCGTGCTGGTACACTCGTGACACCAATGTACTTTTAGTCCCCATTTTTCT 662 ************************************************** ********* consensus_9412#0 TCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAACTTATCTGGACT 900 consensus_9412#1 TCTGGCAAATTTTGTTAGTTTCCCATTAGTCGTTGAGATGTGATAGAACTTATCTGGACT 722 ********************** ************************************* consensus_9412#0 GAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATC 960 consensus_9412#1 GAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTCTATCGCGAATC 782 ************************************************ *********** consensus_9412#0 GCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAAAAAAAAAAAAA 1015 consensus_9412#1 GCATCTTCAGTTCAGTTGAGTAAAGTGATGCTAATTTTAGTTAT----------- 826 ******************************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||