cluster # 9413

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Oryza sativa
cluster # 9413 cluster # 9413 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9413#0 length = 897 sequences # 5

consensus_9413#1 length = 420 sequences # 1

consensusID : consensus_9413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 897
fasta sequence

                              [AAAACCACCAACCCGGAAGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCCCAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCGAGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGCCTCCCCGACGCGCGTCAAGCTCGCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCTCCTGCATGTGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGGAGCGTTCACCACAAGGCGGCGGCGGCGCCATCCTCCCCGCCGTCGCCGACCA-GCCCGCC-GGCCTCGGGCGGCGCCGTCAGGCTTG-GCGGCGCGAGGCGGATGGGCGGCAGCG-C-GCTG-GTGCGG-ATCGGCGCCGTG-GAG-AGCGGCCA-GTGGGCGCGGAGGGCTCTCGCCG-CCACCATCCGCCCCTCCCCCGCCGCGCA-GCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCCCCCGCCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAAT-TTTTTTTTTCTGTAGTGTATAGTGATGTGAGAAGTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCC-ATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCATGATAAGAAGAGAAGAAAAAATTGGAGATAG-TACGTGTCTCCGGATTACGCACAAAAAAAAAA]

[+] EMBL AK065260             [AAAACCACCAACCCGGAAGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCCCAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCGAGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGCCTCCCCGACGCGCGTCAAGCTCGCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGCCGCTCCTGCATGTGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGGAGCGTTCACCACAAGGCGGCGGCGGCGCCATCCTCCCCGCCGTCGCCGACCA GCCCGCC GGCCTCGGGCGGCGCCGTCAGGCTTG GCGGCGCGAGGCGGATGGGCGGCAGCG C GCTG GTGCGG ATCGGCGCCGTG GAG AGCGGCCA GTGGGCGCGGAGGGCTCTCGCCG CCACCATCCGCCCCTCCCCCGCCGCGCA GCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCCCCCGCCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAAT TTTTTTTTTCTGTAGTGTATAGTGATGTGAGAAGTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATT CATTCTGAAATCTGCCC ATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCATGATAAGAAGAGAAGAAAAAATTGGAGATAG TACGTGTCTCCG                    ]
[+] EMBL AU057280             [                 AGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACNGCTCCCCAATCCACCCGACTCCGGCGATCTCCCATGGCGGCA CGGCGACGGCCACGAGGCGGCCGAGCGGGCACGTCCTCTCCGCCGCGCACNACCGCTCCGCCTCCCCGACGCGCGTCAAGCTCGCCGGCGG GGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCNCCTGCATGTGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGGANNATCCACCACAAGGNGGCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU069609             [                 AGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCCCAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCGAGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGNCTNCCCGACGCGCGTCAAGCTCGCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCTCCTGCATGTGCTCGNCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTTCACAAGGAGCAGAAGCGGAGCGTTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BQ908896             [                                                                                                                                                                                                                                                                                                                                                          CGACCATGCCCGCCTGGCCTCGGTCGGCGCCGTCAGGCTTGTGCGGCGCGA GCGGAT GGCGTCAGCGTCTNCTGTGT CGGTATCGGCGCCGTGTGAGTAGCGGCCATGTGGGC CGGAGGGCTCTCGCCGTCCACCATCCGCCCCTCCCCCGCCGCGCATTCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCCCCCGCCCCAGCCGCCTNTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTGTATAGTGATGTGAGAAGTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCC ATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCATGATAAGAAGAGAAGAAAAAATTGGAGATAG TACGTGTCTCCGGATTACGCACAAAAAAAAAA]
[+] EMBL BI811228             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCCTTTGGTTTTGGATTAAATCC TTAATCCTTAT CCTTTCATGATAAGAAGAGAAGAAAAAATTGGAGATAGTTACCTG                          ]




>consensus_9413#0
AAAACCACCAACCCGGAAGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCC
CAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCG
AGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGCCTCCCCGACGCGCGTCAAGCTC
GCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCTCCTGCATG
TGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGG
AGCGTTCACCACAAGGCGGCGGCGGCGCCATCCTCCCCGCCGTCGCCGACCAGCCCGCCG
GCCTCGGGCGGCGCCGTCAGGCTTGGCGGCGCGAGGCGGATGGGCGGCAGCGCGCTGGTG
CGGATCGGCGCCGTGGAGAGCGGCCAGTGGGCGCGGAGGGCTCTCGCCGCCACCATCCGC
CCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCCCCCGC
CCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCAC
CACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCATAG
TAGTAGTACATAGGAATTATTACATATAGAAATTTTTTTTTTCTGTAGTGTATAGTGATG
TGAGAAGTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATTCCA
TTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCATGATAA
GAAGAGAAGAAAAAATTGGAGATAGTACGTGTCTCCGGATTACGCACAAAAAAAAAA

consensusID : consensus_9413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [ATCGGCCCGTGGAGAGCGCCAGTGGCCGAGGCTTTCCCGCCACCATCCGCCCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCGCCCCGCGCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCCATTCGCCGACATCTCAACCCATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTCCCCCTCCATGTGAGAAGTGAGATTAAGCTGAACACACTGGAGTTTTGGATCCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCAAAAAAAAAA]

[+] EMBL BI812910             [ATCGGCCCGTGGAGAGCGCCAGTGGCCGAGGCTTTCCCGCCACCATCCGCCCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCGCCCCGCGCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCCATTCGCCGACATCTCAACCCATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTCCCCCTCCATGTGAGAAGTGAGATTAAGCTGAACACACTGGAGTTTTGGATCCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCAAAAAAAAAA]




>consensus_9413#1
ATCGGCCCGTGGAGAGCGCCAGTGGCCGAGGCTTTCCCGCCACCATCCGCCCCTCCCCCG
CCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCGCCCCGCGCCCAGCCG
CCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATA
AACCCCCATTCGCCGACATCTCAACCCATTGAGACACATACTAGTAGCATAGTAGTAGTA
CATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTCCCCCTCCATGTGAGAAG
TGAGATTAAGCTGAACACACTGGAGTTTTGGATCCCGTGTGCTGCTTGTACATTCCATTC
TGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9413#0      AAAACCACCAACCCGGAAGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCC 60
consensus_9413#1      ------------------------------------------------------------
                                                                                  

consensus_9413#0      CAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCG 120
consensus_9413#1      ------------------------------------------------------------
                                                                                  

consensus_9413#0      AGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGCCTCCCCGACGCGCGTCAAGCTC 180
consensus_9413#1      ------------------------------------------------------------
                                                                                  

consensus_9413#0      GCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCTCCTGCATG 240
consensus_9413#1      ------------------------------------------------------------
                                                                                  

consensus_9413#0      TGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGG 300
consensus_9413#1      ------------------------------------------------------------
                                                                                  

consensus_9413#0      AGCGTTCACCACAAGGCGGCGGCGGCGCCATCCTCCCCGCCGTCGCCGACCAGCCCGCCG 360
consensus_9413#1      ------------------------------------------------------------
                                                                                  

consensus_9413#0      GCCTCGGGCGGCGCCGTCAGGCTTGGCGGCGCGAGGCGGATGGGCGGCAGCGCGCTGGTG 420
consensus_9413#1      ------------------------------------------------------------
                                                                                  

consensus_9413#0      CGGATCGGCGCCGTGGAGAGCGGCCAGTGGGCGCGGAGGGCTCTCGCCGCCACCATCCGC 480
consensus_9413#1      ---ATCGGC-CCGTGGAGAGCG-CCAGTGGCCG----AGGCTTTC-CCGCCACCATCCGC 50
                         ****** ************ ******* **     **** ** **************

consensus_9413#0      CCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGC-CCCCG 539
consensus_9413#1      CCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCGCCCCG 110
                      ****************************************************** *****

consensus_9413#0      C-CCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACC 598
consensus_9413#1      CGCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACC 170
                      * **********************************************************

consensus_9413#0      ACCACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCAT 658
consensus_9413#1      ACCACCGATAAACCCCCATTCGCCGACATCTCAACCCATTGAGACACATACTAGTAGCAT 230
                      **************** ******************* ***********************

consensus_9413#0      AGTAGTAGTACATAGGAATTATTACATATAGAAAT-TTTTTTTTTCTGTAGTGTATAGTG 717
consensus_9413#1      AGTAGTAGTACATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTCCCCCTCC 290
                      *********************************** ****************        

consensus_9413#0      ATGTGAGAAGTGAGATTAAGCTGAACA---TGGAGTTTTGGATCC-GTGTGCTGCTTGTA 773
consensus_9413#1      ATGTGAGAAGTGAGATTAAGCTGAACACACTGGAGTTTTGGATCCCGTGTGCTGCTTGTA 350
                      ***************************   *************** **************

consensus_9413#0      CATTCCATTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTC 833
consensus_9413#1      CATTCCATTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTC 410
                      ************************************************************

consensus_9413#0      ATGATAAGAAGAGAAGAAAAAATTGGAGATAGTACGTGTCTCCGGATTACGCACAAAAAA 893
consensus_9413#1      AAAAAAAAAA-------------------------------------------------- 420
                      *  * ** **                                                  

consensus_9413#0      AAAA 897
consensus_9413#1      ----