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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1937 fasta sequence
[CGGCGGCGGCTTTCCACCTCCCCGCCGGCTTCGCGCTCCCAACCTCGCCGTCGTTCGTCATGTTCCGGCTGCGCTCCTCCGCTCGCCTGCTGAGAGAGCTACGGGAGGCGTCGCGGTCGTCGGGGCGCCGCCGGGAATGGCTCTCCGGCGGCGCAGTAGCCTCCGCCGCGCGGACGACCTCGCTCCTGCACCCTCTGCCCGGGCTCGACGTCCCGCAGTGCCTCCCCGACCAGCTCGGCGTCCAGCCCACCCGCGTCACCACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACCTCCCGGGCCCGTCGGCGTGCGTAGGGGTGTTCGTGGATTCCGGCTCGGTTTACGAGACGGCGGAGACGGCCGGCGTGTCACACCTGCTCGAGAGGCTGTCCTTCAAGGACACGGCGCACCGCAGCCACCTGCAGATTGTGCAGGATGTGGAGGCCACCGGAGGAAACATCGGGGCGTCTGCATCAAGGGAGCAGACGGTGTACAGCTACGAGACTCTCAAGGCCTACTTGCCGCAGGCCATCGAGGTGCTCATCGACTGTGTCCGCAATCCATTGTTCCTCCAAGACGAAGTCGAGCGACAGGTGGCCTTTGCCAGAGAAGAAGTTCAGGAGCTACAGAAGAACCCTGAGAGATTTCTTCAGGAATCACTTAATCTAGTTGGATACACAGGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGGAGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACTGCTGATCGCTTGGTTGTAGCAGCATCAGGTGTTGATCATCAATACCTTTTAGATGTTGCAGAGCCTTTATTGTCTGATTGGCACAAGGGCTCCCCAGTGGAAAGGCCAGAGTCTAAGTATATCGGTGGGGATTTTAGACATAGAGCAGACTCAGAGATGACCCATGTTGCTTTGGCTTTCGAAGTGCCCGGGGGCTGGCTTGAAGAGAGAGATGCCACAATTATGACTGTAGTACAGACTTTAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGGTCCTGGAAAAGGGATGCATTCACGGCTTTATCTGCGTGTCTTAACTAAATACCACACGGTCGAATCATTTTCGGTATTTAGCAATGCATTTGATAGAAGTGGCCTCTTTGGTATTTACTTGACCACGCCTTCAGATTTTGTTGCAAAGGCTGTTGATATTGCGACAAAAGAACTGATTGCTATTGCAACACCTGGACAAGTGACAGACATTGAATTGGCACGAGCGAAAAACTCAACAATTTCTGCCGTGCTGATGAATCTTGAATCCAGGGTAATTGTTGCAGAAGATATAGGGAGGCAGATATTGACTTATGGTTGCAGGAAGCCTGTTGACCATTTTCTTCAATGTATGGACGAAATGACTCTAGATGATATAACAGCTTTTGCCAAGAAGATGTTGTCTTCACCACCCACAATGGCTAGTTGGGGAGATGTTGATAAAGTTCCTCCATATGAATTTGTTTGCAAGAGGTTTTGAAGTTCTCCGACACAATGATCAGTGGTGGACATGAAGATGGGATTTTGTTTACAATGTTGTATAATCCAATTCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTGAAAGTTTTGCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCCCCTTGGCCCCCCCTTTACTGAGGGGGAAAAATTTTTAAAACCCCGAGGGAACACCCCCTTTAA]
[+] EMBL AK073175 [CGGCGGCGGCTTTCCACCTCCCCGCCGGCTTCGCGCTCCCAACCTCGCCGTCGTTCGTCATGTTCCGGCTGCGCTCCTCCGCTCGCCTGCTGAGAGAGCTACGGGAGGCGTCGCGGTCGTCGGGGCGCCGCCGGGAATGGCTCTCCGGCGGCGCAGTAGCCTCCGCCGCGCGGACGACCTCGCTCCTGCACCCTCTGCCCGGGCTCGACGTCCCGCAGTGCCTCCCCGACCAGCTCGGCGTCCAGCCCACCCGCGTCACCACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACCTCCCGGGCCCGTCGGCGTGCGTAGGGGTGTTCGTGGATTCCGGCTCGGTTTACGAGACGGCGGAGACGGCCGGCGTGTCACACCTGCTCGAGAGGCTGTCCTTCAAGGACACGGCGCACCGCAGCCACCTGCAGATTGTGCAGGATGTGGAGGCCACCGGAGGAAACATCGGGGCGTCTGCATCAAGGGAGCAGACGGTGTACAGCTACGAGACTCTCAAGGCCTACTTGCCGCAGGCCATCGAGGTGCTCATCGACTGTGTCCGCAATCCATTGTTCCTCCAAGACGAAGTCGAGCGACAGGTGGCCTTTGCCAGAGAAGAAGTTCAGGAGCTACAGAAGAACCCTGAGAGATTTCTTCAGGAATCACTTAATCTAGTTGGATACACAGGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGGAGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACTGCTGATCGCTTGGTTGTAGCAGCATCAGGTGTTGATCATCAATACCTTTTAGATGTTGCAGAGCCTTTATTGTCTGATTGGCACAAGGGCTCCCCAGTGGAAAGGCCAGAGTCTAAGTATATCGGTGGGGATTTTAGACATAGAGCAGACTCAGAGATGACCCATGTTGCTTTGGCTTTCGAAGTGCCCGGGGGCTGGCTTGAAGAGAGAGATGCCACAATTATGACTGTAGTACAGACTTTAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGGTCCTGGAAAAGGGATGCATTCACGGCTTTATCTGCGTGTCTTAACTAAATACCACACGGTCGAATCATTTTCGGTATTTAGCAATGCATTTGATAGAAGTGGCCTCTTTGGTATTTACTTGACCACGCCTTCAGATTTTGTTGCAAAGGCTGTTGATATTGCGACAAAAGAACTGATTGCTATTGCAACACCTGGACAAGTGACAGACATTGAATTGGCACGAGCGAAAAACTCAACAATTTCTGCCGTGCTGATGAATCTTGAATCCAGGGTAATTGTTGCAGAAGATATAGGGAGGCAGATATTGACTTATGGTTGCAGGAAGCCTGTTGACCATTTTCTTCAATGTATGGACGAAATGACTCTAGATGATATAACAGCTTTTGCCAAGAAGATGTTGTCTTCACCACCCACAATGGCTAGTTGGGGAGATGTTGATAAAGTTCCTCCATATGAATTTGTTTGCAAGAGGTTTTGAAGTTCTCCGACACAATGATCAGTGGTGGACATGAAGATGGGATTTTGTTTACAATGTTGTATAATCCAATTCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTG ]
[+] EMBL CB645074 [ CACCTCCCCGCCGGCTTCGCGCTCCCAACCTCGCCGTCGTTCGTCATGTTCCGGCTGCGCTCCTCCGCTCGCCTGCTGAGAGAGCTACGGGAGGCGTCGCGGTCGTCGGGGCGCCGCCGGGAATGGCTCTCCGGCGGCGCAGTAGCCTCCGCCGCGCGGACGACCTCGCTCCTGCACCCTCTGCCCGGGCTCGACGTCCCGCAGTGCCTCCCCGACCAGCTCGGCGTCCAGCCCACCCGCGTCACCACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACCTCCCGGGCCCGTCGGCGTGCGTAGGGGTGTTCGTGGATTCCGGCTCGGTTTACGAGACGGCGGAGACGGCCGGCGTGTCACACCTGCTCGAGAGGCTGTCCTTCAAGGACACGGCGCACCGCAGCCACCTGCAGATTGTGCAGGATGTGGAGGCCACCGGAGGAAACATCGGGGCGTCTGCATCAAGGGAGCAGACGGTGTACAGCTACGAGACTCTCAAGGCCTACTTGCCGCAGGCCATCGAGGTGCTCATCGACTGTGTCCGCAATCCATTGTTCCTCCAAGACGAAGTCGAGCGACAGGTGGCCTTTGCCAGAGAAGAAGTTCAGGAGCTACAGAAGAACCCTGAGAGATTTCTTCAGGAATCACTTAATCTAGTTGGATACACAGGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGGAGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACT ]
[+] EMBL OSR27531A [ GGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGGAGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACTGCTGATCGCTTGGTTGTAGCAGCATCAGGTGTTGATCATCAATACCTTTTAGATGTTGCAGAGCCTTTATTGTCTGATTGGCACAAGGGCTCCCCAGTGGAAAGGCCAGAGTCTAAGTATATCGGTGGGGATTTTAGACATAGAGCAGACTCAGAGATGACCCATGTTGCTTTGGCTTTCGAAGTGCCCGGGGGCTGGCTTGAAGAGAGAGATGCCACAATTATGACTGTAGTACAGACTTTAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGG ]
[+] EMBL AU057920 [ AAGAGAGAGATGCCACAATTATGACTGTAGNACAGACTTTAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGGTCCTGGAAAAGGGATGCATTCACGGCTTTATCTGCGTGTCTTAACTAAATACCACACGGTCGAATCATTTTCGGTATTTAGCAATGCATTTGATAGAAGTNGCCTCTTTGGTATTTACTTGACCACNCCTTCAGATTTTGTTGCAAAGGCTGTTGATATNGCGACAAAAGAAC ]
[+] EMBL CF314026 [ ATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTGAAAGTTTTGCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCCCCTTGGCCCCCCCTTTACTGAGGGGGAAAAATTTTTAAAACCCCGAGGGAACACCCCCTTTAA]
consensusID : consensus_9418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence
[NTTCTCCGACACAATGATCCNGTGGTGGACATGAAGNTGGGATTTTGTTTACNATGTTGTATAATCCAATTCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCNGGTCAAACGGNGGTGAAAGTTTTGCNATATCTCTCGAAGCAAGTTTAGCGATTCCTCGTCTTGTTATGCAAACATGNATATGCACTTGTCTTATTGNGTGCTCTGTAAACAATTTTCACGGCGATGATATATAGGNGTTNCGGTGCGGAAAAAAA]
[+] EMBL AU057921 [NTTCTCCGACACAATGATCCNGTGGTGGACATGAAGNTGGGATTTTGTTTACNATGTTGTATAATCCAATTCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCNGGTCAAACGGNGGTGAAAGTTTTGCNATATCTCTCGAAGCAAGTTTAGCGATTCCTCGTCTTGTTATGCAAACATGNATATGCACTTGTCTTATTGNGTGCTCTGTAAACAATTTTCACGGCGATGATATATAGGNGTTNCGGTGCGGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9418#0 CGGCGGCGGCTTTCCACCTCCCCGCCGGCTTCGCGCTCCCAACCTCGCCGTCGTTCGTCA 60
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 TGTTCCGGCTGCGCTCCTCCGCTCGCCTGCTGAGAGAGCTACGGGAGGCGTCGCGGTCGT 120
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CGGGGCGCCGCCGGGAATGGCTCTCCGGCGGCGCAGTAGCCTCCGCCGCGCGGACGACCT 180
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CGCTCCTGCACCCTCTGCCCGGGCTCGACGTCCCGCAGTGCCTCCCCGACCAGCTCGGCG 240
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 TCCAGCCCACCCGCGTCACCACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACCTCC 300
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CGGGCCCGTCGGCGTGCGTAGGGGTGTTCGTGGATTCCGGCTCGGTTTACGAGACGGCGG 360
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 AGACGGCCGGCGTGTCACACCTGCTCGAGAGGCTGTCCTTCAAGGACACGGCGCACCGCA 420
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 GCCACCTGCAGATTGTGCAGGATGTGGAGGCCACCGGAGGAAACATCGGGGCGTCTGCAT 480
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CAAGGGAGCAGACGGTGTACAGCTACGAGACTCTCAAGGCCTACTTGCCGCAGGCCATCG 540
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 AGGTGCTCATCGACTGTGTCCGCAATCCATTGTTCCTCCAAGACGAAGTCGAGCGACAGG 600
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 TGGCCTTTGCCAGAGAAGAAGTTCAGGAGCTACAGAAGAACCCTGAGAGATTTCTTCAGG 660
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 AATCACTTAATCTAGTTGGATACACAGGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGG 720
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 AGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACTG 780
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CTGATCGCTTGGTTGTAGCAGCATCAGGTGTTGATCATCAATACCTTTTAGATGTTGCAG 840
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 AGCCTTTATTGTCTGATTGGCACAAGGGCTCCCCAGTGGAAAGGCCAGAGTCTAAGTATA 900
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 TCGGTGGGGATTTTAGACATAGAGCAGACTCAGAGATGACCCATGTTGCTTTGGCTTTCG 960
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 AAGTGCCCGGGGGCTGGCTTGAAGAGAGAGATGCCACAATTATGACTGTAGTACAGACTT 1020
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 TAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGGTCCTGGAAAAGGGATGCATTCACGGC 1080
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 TTTATCTGCGTGTCTTAACTAAATACCACACGGTCGAATCATTTTCGGTATTTAGCAATG 1140
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CATTTGATAGAAGTGGCCTCTTTGGTATTTACTTGACCACGCCTTCAGATTTTGTTGCAA 1200
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 AGGCTGTTGATATTGCGACAAAAGAACTGATTGCTATTGCAACACCTGGACAAGTGACAG 1260
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 ACATTGAATTGGCACGAGCGAAAAACTCAACAATTTCTGCCGTGCTGATGAATCTTGAAT 1320
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CCAGGGTAATTGTTGCAGAAGATATAGGGAGGCAGATATTGACTTATGGTTGCAGGAAGC 1380
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CTGTTGACCATTTTCTTCAATGTATGGACGAAATGACTCTAGATGATATAACAGCTTTTG 1440
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CCAAGAAGATGTTGTCTTCACCACCCACAATGGCTAGTTGGGGAGATGTTGATAAAGTTC 1500
consensus_9418#1 ------------------------------------------------------------
consensus_9418#0 CTCCATATGAATTTGTTTGCAAGAGGTTTTGAAGTTCTCCGACACAATGATC-AGTGGTG 1559
consensus_9418#1 ---------------------------------NTTCTCCGACACAATGATCCNGTGGTG 27
****************** ******
consensus_9418#0 GACATGAAGATGGGATTTTGTTTACAATGTTGTATAATCCAATTCTCGCTATATTTGGGC 1619
consensus_9418#1 GACATGAAGNTGGGATTTTGTTTACNATGTTGTATAATCCAATTCTCGCTATATTTGGGC 87
********* *************** **********************************
consensus_9418#0 CTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATC 1679
consensus_9418#1 CTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATC 147
************************************************************
consensus_9418#0 ATCTTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTGAAAGTTTTGCAA 1739
consensus_9418#1 ATCTTCAAACAGCATATATCTTGTGAAAGTCCNGGTCAAACGGNGGTGAAAGTTTTGCNA 207
******************************** ********** ************** *
consensus_9418#0 TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1799
consensus_9418#1 TATCTCTCGAAGCAAGTTTAGCGATTCCTCGTCTTGTTATGCAAACATGNATATGCACTT 267
** ** ** * * * *** * * * *
consensus_9418#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1859
consensus_9418#1 GTCTTATTGNGTGCTCTGTAAACAATTTTCACGGCGATGATATATAGGNGTTNCGGTGCG 327
* *** ** * * * * * *
consensus_9418#0 AAAAAAAAGGCCCCCCCTTGGCCCCCCCTTTACTGAGGGGGAAAAATTTTTAAAACCCCG 1919
consensus_9418#1 GAAAAAAA---------------------------------------------------- 335
*******
consensus_9418#0 AGGGAACACCCCCTTTAA 1937
consensus_9418#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||