These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1937 fasta sequence [CGGCGGCGGCTTTCCACCTCCCCGCCGGCTTCGCGCTCCCAACCTCGCCGTCGTTCGTCATGTTCCGGCTGCGCTCCTCCGCTCGCCTGCTGAGAGAGCTACGGGAGGCGTCGCGGTCGTCGGGGCGCCGCCGGGAATGGCTCTCCGGCGGCGCAGTAGCCTCCGCCGCGCGGACGACCTCGCTCCTGCACCCTCTGCCCGGGCTCGACGTCCCGCAGTGCCTCCCCGACCAGCTCGGCGTCCAGCCCACCCGCGTCACCACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACCTCCCGGGCCCGTCGGCGTGCGTAGGGGTGTTCGTGGATTCCGGCTCGGTTTACGAGACGGCGGAGACGGCCGGCGTGTCACACCTGCTCGAGAGGCTGTCCTTCAAGGACACGGCGCACCGCAGCCACCTGCAGATTGTGCAGGATGTGGAGGCCACCGGAGGAAACATCGGGGCGTCTGCATCAAGGGAGCAGACGGTGTACAGCTACGAGACTCTCAAGGCCTACTTGCCGCAGGCCATCGAGGTGCTCATCGACTGTGTCCGCAATCCATTGTTCCTCCAAGACGAAGTCGAGCGACAGGTGGCCTTTGCCAGAGAAGAAGTTCAGGAGCTACAGAAGAACCCTGAGAGATTTCTTCAGGAATCACTTAATCTAGTTGGATACACAGGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGGAGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACTGCTGATCGCTTGGTTGTAGCAGCATCAGGTGTTGATCATCAATACCTTTTAGATGTTGCAGAGCCTTTATTGTCTGATTGGCACAAGGGCTCCCCAGTGGAAAGGCCAGAGTCTAAGTATATCGGTGGGGATTTTAGACATAGAGCAGACTCAGAGATGACCCATGTTGCTTTGGCTTTCGAAGTGCCCGGGGGCTGGCTTGAAGAGAGAGATGCCACAATTATGACTGTAGTACAGACTTTAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGGTCCTGGAAAAGGGATGCATTCACGGCTTTATCTGCGTGTCTTAACTAAATACCACACGGTCGAATCATTTTCGGTATTTAGCAATGCATTTGATAGAAGTGGCCTCTTTGGTATTTACTTGACCACGCCTTCAGATTTTGTTGCAAAGGCTGTTGATATTGCGACAAAAGAACTGATTGCTATTGCAACACCTGGACAAGTGACAGACATTGAATTGGCACGAGCGAAAAACTCAACAATTTCTGCCGTGCTGATGAATCTTGAATCCAGGGTAATTGTTGCAGAAGATATAGGGAGGCAGATATTGACTTATGGTTGCAGGAAGCCTGTTGACCATTTTCTTCAATGTATGGACGAAATGACTCTAGATGATATAACAGCTTTTGCCAAGAAGATGTTGTCTTCACCACCCACAATGGCTAGTTGGGGAGATGTTGATAAAGTTCCTCCATATGAATTTGTTTGCAAGAGGTTTTGAAGTTCTCCGACACAATGATCAGTGGTGGACATGAAGATGGGATTTTGTTTACAATGTTGTATAATCCAATTCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTGAAAGTTTTGCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCCCCTTGGCCCCCCCTTTACTGAGGGGGAAAAATTTTTAAAACCCCGAGGGAACACCCCCTTTAA] [+] EMBL AK073175 [CGGCGGCGGCTTTCCACCTCCCCGCCGGCTTCGCGCTCCCAACCTCGCCGTCGTTCGTCATGTTCCGGCTGCGCTCCTCCGCTCGCCTGCTGAGAGAGCTACGGGAGGCGTCGCGGTCGTCGGGGCGCCGCCGGGAATGGCTCTCCGGCGGCGCAGTAGCCTCCGCCGCGCGGACGACCTCGCTCCTGCACCCTCTGCCCGGGCTCGACGTCCCGCAGTGCCTCCCCGACCAGCTCGGCGTCCAGCCCACCCGCGTCACCACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACCTCCCGGGCCCGTCGGCGTGCGTAGGGGTGTTCGTGGATTCCGGCTCGGTTTACGAGACGGCGGAGACGGCCGGCGTGTCACACCTGCTCGAGAGGCTGTCCTTCAAGGACACGGCGCACCGCAGCCACCTGCAGATTGTGCAGGATGTGGAGGCCACCGGAGGAAACATCGGGGCGTCTGCATCAAGGGAGCAGACGGTGTACAGCTACGAGACTCTCAAGGCCTACTTGCCGCAGGCCATCGAGGTGCTCATCGACTGTGTCCGCAATCCATTGTTCCTCCAAGACGAAGTCGAGCGACAGGTGGCCTTTGCCAGAGAAGAAGTTCAGGAGCTACAGAAGAACCCTGAGAGATTTCTTCAGGAATCACTTAATCTAGTTGGATACACAGGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGGAGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACTGCTGATCGCTTGGTTGTAGCAGCATCAGGTGTTGATCATCAATACCTTTTAGATGTTGCAGAGCCTTTATTGTCTGATTGGCACAAGGGCTCCCCAGTGGAAAGGCCAGAGTCTAAGTATATCGGTGGGGATTTTAGACATAGAGCAGACTCAGAGATGACCCATGTTGCTTTGGCTTTCGAAGTGCCCGGGGGCTGGCTTGAAGAGAGAGATGCCACAATTATGACTGTAGTACAGACTTTAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGGTCCTGGAAAAGGGATGCATTCACGGCTTTATCTGCGTGTCTTAACTAAATACCACACGGTCGAATCATTTTCGGTATTTAGCAATGCATTTGATAGAAGTGGCCTCTTTGGTATTTACTTGACCACGCCTTCAGATTTTGTTGCAAAGGCTGTTGATATTGCGACAAAAGAACTGATTGCTATTGCAACACCTGGACAAGTGACAGACATTGAATTGGCACGAGCGAAAAACTCAACAATTTCTGCCGTGCTGATGAATCTTGAATCCAGGGTAATTGTTGCAGAAGATATAGGGAGGCAGATATTGACTTATGGTTGCAGGAAGCCTGTTGACCATTTTCTTCAATGTATGGACGAAATGACTCTAGATGATATAACAGCTTTTGCCAAGAAGATGTTGTCTTCACCACCCACAATGGCTAGTTGGGGAGATGTTGATAAAGTTCCTCCATATGAATTTGTTTGCAAGAGGTTTTGAAGTTCTCCGACACAATGATCAGTGGTGGACATGAAGATGGGATTTTGTTTACAATGTTGTATAATCCAATTCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTG ] [+] EMBL CB645074 [ CACCTCCCCGCCGGCTTCGCGCTCCCAACCTCGCCGTCGTTCGTCATGTTCCGGCTGCGCTCCTCCGCTCGCCTGCTGAGAGAGCTACGGGAGGCGTCGCGGTCGTCGGGGCGCCGCCGGGAATGGCTCTCCGGCGGCGCAGTAGCCTCCGCCGCGCGGACGACCTCGCTCCTGCACCCTCTGCCCGGGCTCGACGTCCCGCAGTGCCTCCCCGACCAGCTCGGCGTCCAGCCCACCCGCGTCACCACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACCTCCCGGGCCCGTCGGCGTGCGTAGGGGTGTTCGTGGATTCCGGCTCGGTTTACGAGACGGCGGAGACGGCCGGCGTGTCACACCTGCTCGAGAGGCTGTCCTTCAAGGACACGGCGCACCGCAGCCACCTGCAGATTGTGCAGGATGTGGAGGCCACCGGAGGAAACATCGGGGCGTCTGCATCAAGGGAGCAGACGGTGTACAGCTACGAGACTCTCAAGGCCTACTTGCCGCAGGCCATCGAGGTGCTCATCGACTGTGTCCGCAATCCATTGTTCCTCCAAGACGAAGTCGAGCGACAGGTGGCCTTTGCCAGAGAAGAAGTTCAGGAGCTACAGAAGAACCCTGAGAGATTTCTTCAGGAATCACTTAATCTAGTTGGATACACAGGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGGAGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACT ] [+] EMBL OSR27531A [ GGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGGAGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACTGCTGATCGCTTGGTTGTAGCAGCATCAGGTGTTGATCATCAATACCTTTTAGATGTTGCAGAGCCTTTATTGTCTGATTGGCACAAGGGCTCCCCAGTGGAAAGGCCAGAGTCTAAGTATATCGGTGGGGATTTTAGACATAGAGCAGACTCAGAGATGACCCATGTTGCTTTGGCTTTCGAAGTGCCCGGGGGCTGGCTTGAAGAGAGAGATGCCACAATTATGACTGTAGTACAGACTTTAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGG ] [+] EMBL AU057920 [ AAGAGAGAGATGCCACAATTATGACTGTAGNACAGACTTTAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGGTCCTGGAAAAGGGATGCATTCACGGCTTTATCTGCGTGTCTTAACTAAATACCACACGGTCGAATCATTTTCGGTATTTAGCAATGCATTTGATAGAAGTNGCCTCTTTGGTATTTACTTGACCACNCCTTCAGATTTTGTTGCAAAGGCTGTTGATATNGCGACAAAAGAAC ] [+] EMBL CF314026 [ ATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTGAAAGTTTTGCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCCCCTTGGCCCCCCCTTTACTGAGGGGGAAAAATTTTTAAAACCCCGAGGGAACACCCCCTTTAA] consensusID : consensus_9418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [NTTCTCCGACACAATGATCCNGTGGTGGACATGAAGNTGGGATTTTGTTTACNATGTTGTATAATCCAATTCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCNGGTCAAACGGNGGTGAAAGTTTTGCNATATCTCTCGAAGCAAGTTTAGCGATTCCTCGTCTTGTTATGCAAACATGNATATGCACTTGTCTTATTGNGTGCTCTGTAAACAATTTTCACGGCGATGATATATAGGNGTTNCGGTGCGGAAAAAAA] [+] EMBL AU057921 [NTTCTCCGACACAATGATCCNGTGGTGGACATGAAGNTGGGATTTTGTTTACNATGTTGTATAATCCAATTCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATCTTCAAACAGCATATATCTTGTGAAAGTCCNGGTCAAACGGNGGTGAAAGTTTTGCNATATCTCTCGAAGCAAGTTTAGCGATTCCTCGTCTTGTTATGCAAACATGNATATGCACTTGTCTTATTGNGTGCTCTGTAAACAATTTTCACGGCGATGATATATAGGNGTTNCGGTGCGGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9418#0 CGGCGGCGGCTTTCCACCTCCCCGCCGGCTTCGCGCTCCCAACCTCGCCGTCGTTCGTCA 60 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 TGTTCCGGCTGCGCTCCTCCGCTCGCCTGCTGAGAGAGCTACGGGAGGCGTCGCGGTCGT 120 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CGGGGCGCCGCCGGGAATGGCTCTCCGGCGGCGCAGTAGCCTCCGCCGCGCGGACGACCT 180 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CGCTCCTGCACCCTCTGCCCGGGCTCGACGTCCCGCAGTGCCTCCCCGACCAGCTCGGCG 240 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 TCCAGCCCACCCGCGTCACCACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACCTCC 300 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CGGGCCCGTCGGCGTGCGTAGGGGTGTTCGTGGATTCCGGCTCGGTTTACGAGACGGCGG 360 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 AGACGGCCGGCGTGTCACACCTGCTCGAGAGGCTGTCCTTCAAGGACACGGCGCACCGCA 420 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 GCCACCTGCAGATTGTGCAGGATGTGGAGGCCACCGGAGGAAACATCGGGGCGTCTGCAT 480 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CAAGGGAGCAGACGGTGTACAGCTACGAGACTCTCAAGGCCTACTTGCCGCAGGCCATCG 540 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 AGGTGCTCATCGACTGTGTCCGCAATCCATTGTTCCTCCAAGACGAAGTCGAGCGACAGG 600 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 TGGCCTTTGCCAGAGAAGAAGTTCAGGAGCTACAGAAGAACCCTGAGAGATTTCTTCAGG 660 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 AATCACTTAATCTAGTTGGATACACAGGTGCTCTTGCAAATCCACTAGTAGCCCCTGAGG 720 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 AGAGTCTCACACGAATCAATGGCAGTATTATTCAAAAGTTCTATCACGAGAACTTCACTG 780 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CTGATCGCTTGGTTGTAGCAGCATCAGGTGTTGATCATCAATACCTTTTAGATGTTGCAG 840 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 AGCCTTTATTGTCTGATTGGCACAAGGGCTCCCCAGTGGAAAGGCCAGAGTCTAAGTATA 900 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 TCGGTGGGGATTTTAGACATAGAGCAGACTCAGAGATGACCCATGTTGCTTTGGCTTTCG 960 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 AAGTGCCCGGGGGCTGGCTTGAAGAGAGAGATGCCACAATTATGACTGTAGTACAGACTT 1020 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 TAATGGGCGGTGGTGGTTCATTCTCTTCTGGTGGTCCTGGAAAAGGGATGCATTCACGGC 1080 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 TTTATCTGCGTGTCTTAACTAAATACCACACGGTCGAATCATTTTCGGTATTTAGCAATG 1140 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CATTTGATAGAAGTGGCCTCTTTGGTATTTACTTGACCACGCCTTCAGATTTTGTTGCAA 1200 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 AGGCTGTTGATATTGCGACAAAAGAACTGATTGCTATTGCAACACCTGGACAAGTGACAG 1260 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 ACATTGAATTGGCACGAGCGAAAAACTCAACAATTTCTGCCGTGCTGATGAATCTTGAAT 1320 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CCAGGGTAATTGTTGCAGAAGATATAGGGAGGCAGATATTGACTTATGGTTGCAGGAAGC 1380 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CTGTTGACCATTTTCTTCAATGTATGGACGAAATGACTCTAGATGATATAACAGCTTTTG 1440 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CCAAGAAGATGTTGTCTTCACCACCCACAATGGCTAGTTGGGGAGATGTTGATAAAGTTC 1500 consensus_9418#1 ------------------------------------------------------------ consensus_9418#0 CTCCATATGAATTTGTTTGCAAGAGGTTTTGAAGTTCTCCGACACAATGATC-AGTGGTG 1559 consensus_9418#1 ---------------------------------NTTCTCCGACACAATGATCCNGTGGTG 27 ****************** ****** consensus_9418#0 GACATGAAGATGGGATTTTGTTTACAATGTTGTATAATCCAATTCTCGCTATATTTGGGC 1619 consensus_9418#1 GACATGAAGNTGGGATTTTGTTTACNATGTTGTATAATCCAATTCTCGCTATATTTGGGC 87 ********* *************** ********************************** consensus_9418#0 CTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATC 1679 consensus_9418#1 CTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATC 147 ************************************************************ consensus_9418#0 ATCTTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTGAAAGTTTTGCAA 1739 consensus_9418#1 ATCTTCAAACAGCATATATCTTGTGAAAGTCCNGGTCAAACGGNGGTGAAAGTTTTGCNA 207 ******************************** ********** ************** * consensus_9418#0 TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1799 consensus_9418#1 TATCTCTCGAAGCAAGTTTAGCGATTCCTCGTCTTGTTATGCAAACATGNATATGCACTT 267 ** ** ** * * * *** * * * * consensus_9418#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1859 consensus_9418#1 GTCTTATTGNGTGCTCTGTAAACAATTTTCACGGCGATGATATATAGGNGTTNCGGTGCG 327 * *** ** * * * * * * consensus_9418#0 AAAAAAAAGGCCCCCCCTTGGCCCCCCCTTTACTGAGGGGGAAAAATTTTTAAAACCCCG 1919 consensus_9418#1 GAAAAAAA---------------------------------------------------- 335 ******* consensus_9418#0 AGGGAACACCCCCTTTAA 1937 consensus_9418#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||