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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1563 fasta sequence
[CCAAACAAAAACAATCAGAAGCAGACGAACAGCGCCACGGAATTCATCG-AAAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCGGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACT-CAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGAGGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCCTAGTAACAGAGAGGGGCTTAGGCAAGAGGTCATTGTTGACCTGGTGGATCAATGCCGTTCATACAAGCAGAGAGTGGTAGAGCTAGTAAACACTACCTCGAATGAGGAGTTGCTCAGCCAGGGCCTTTCTTTGAATGATGATTTGCAGAGAGTTCTAGCAAAACATGATGCTATTGCTGCAGGCGTTGCAGTTAGGTTGGAGAAAACAAAATCTCTCCAAACCAAAATTGATAGTTCTCCACCCGCAAATCCTGGGACTTCAAAAGCACCAGTTCAAAGTTCTTCAGGGACTGCAAGTGCCAGCAACCAATCTACCTTAGCACTTCCTGCTCCAGCATCATCCAGTAGTCCAAAAGCTCCTGCAGCACCAGTACCGGTTATCGACCTTCTTAGTGGAGATGATTACATCAAACCTGAACCTGCAAACTCCCTTGCACTTGTTCCTGTCACAGAATATTCAGCAGCTGATCAGAATGTGCTAGCTCTTGCAGACATGTTTGAGCAAAATAATGCCAACAGAAGCAACAATAACCTTACTAACTCTTTTAATACATCGGCACCAAATTCAAATTTCCCTGCATCACAAGCATATCCTGCTCCAGTGCAACCTGCTCTGCCTCAGCATCCTGTTGCTTATTCAAATGGGGTTTCATCCAATGCCATCGTACCTTACTATGATGATCAAAATGGAGGCCTTCCACCACCACCATGGGAGATTCAGCA]
[+] EMBL CB633004 [CCAAACAAAAACAATCAGAAGCAGACGAACAGCGCCACGGAATTCATCG AAAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACGGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCCGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCAGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAACAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCTATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACT CAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGAGGCATCATGGATGTTCTTTCCGAGATGTTGAAT ]
[+] EMBL CB631520 [ ACAACCCCAATCAGAAGCAGACGAACAGCGCCACGGAAGTCATCG AAAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACGGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCCGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCAGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAACAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCTATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATC AAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAGATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTGTGGCGGGGTACGTGCTAGATATCCACAATACTACGCAGCATATCACGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACT CAACCTCTGCAAAACTATCCTGCA ]
[+] EMBL AK102828 [ AGCGCCACGGAATTCATCGAAAAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCGGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACT CAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGAGGCATCATGGATGTTCTTTCCGAGATGTTGGATGCTTTGGATCCTAGTAACAGAGAGGGGCTTAGGCAAGAGGTCATTGTTGACCTGGTGGATCAATGCCGTTCATACAAGCAGAGAGTGGTAGAGCTAGTAAACACTACCTCGAATGAGGAGTTGCTCAGCCAGGGCCTTTCTTTGAATGATGATTTGCAGAGAGTTCTAGCAAAACATGATGCTATTGCTGCAGGCGTTGCAGTTAGGTTGGAGAAAACAAAATCTCTCCAAACCAAAATTGATAGTTCTCCACCCGCAAATCCTGGGACTTCAAAAGCACCAGTTCAAAGTTCTTCAGGGACTGCAAGTGCCAGCAACCAATCTACCTTAGCACTTCCTGCTCCAGCATCATCCAGTAGTCCAAAAGCTCCTGCAGCACCAGTACCGGTTATCGACCTTCTTAGTGGAGATGATTACATCAAACCTGAACCTGCAAACTCCCTTGCACTTGTTCCTGTCACAGAATATTCAGCAGCTGATCAGAATGTGCTAGCTCTTGCAGACATGTTTGAGCAAAATAATGCCAACAGAAGCAACAATAACCTTACTAACTCTTTTAATACATCGGCACCAAATTCAAATTTCCCTGCATCACAAGCATATCCTGCTCCAGTGCAACCTGCTCTGCCTCAGCATCCTGTTGCTTATTCAAATGGGGTTTCATCCAATGCCATCGTACCTTACTATGATGATCAAAATGGAGGCCTTCCACCACCACCATGGGAGATTCAGCA]
[+] EMBL CB663928 [ TTCATCG AGAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCGGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAAATGGTGAAAATACTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAACAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACTCCAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCATCAAGAGCCAC ]
[+] EMBL AU062925 [ CCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGG GCNTCCGGTTTCGGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAANATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATG AATGGTG AAATAGTC AGNAAAGGCCTGATTTTCATGTG AAGAG ]
consensusID : consensus_9425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence
[GCTGAGAAACACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGGTATGTATATAAGTTTAAACCTTAAAAGTTAAAATTGTCTGGTTAGTTGTAAACTCTTTAAATTTTAACGCCTTATTCTTTTGAGCTTTTATCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGGTATTGTTCCACTTATATCAAATATACTGATATTCTAATTATCTTTGATTCTTCTTTCATGCTATTTTTTCTCCCCAAAGGGTATAACTCCAATAAGGTAATAAGAGAATTATTTTCATTTTTTTAAGATAACAGCATCGTAACACAATTGTTAAGCATGAGAGTGTGGTCATGCTATTTCCAAATAATATTATAGCTAGTTTAATATCAAACCATCGTGAACTAATTCAGTGACATTCCTGGAAACCTTGTTCACATGGCAGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACTCAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGACGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCCTAGTAAC]
[+] EMBL CB673459 [GCTGAGAAACACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGGTATGTATATAAGTTTAAACCTTAAAAGTTAAAATTGTCTGGTTAGTTGTAAACTCTTTAAATTTTAACGCCTTATTCTTTTGAGCTTTTATCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGGTATTGTTCCACTTATATCAAATATACTGATATTCTAATTATCTTTGATTCTTCTTTCATGCTATTTTTTCTCCCCAAAGGGTATAACTCCAATAAGGTAATAAGAGAATTATTTTCATTTTTTTAAGATAACAGCATCGTAACACAATTGTTAAGCATGAGAGTGTGGTCATGCTATTTCCAAATAATATTATAGCTAGTTTAATATCAAACCATCGTGAACTAATTCAGTGACATTCCTGGAAACCTTGTTCACATGGCAGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACTCAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGACGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCCTAGTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9425#0 CCAAACAAAAACAATCAGAAGCAGACGAACAGCGCCACGGAATTCATCGAAAAAAAATTA 60
consensus_9425#1 ---------------------------------------------GCTGAGAAACA---- 11
** *** *
consensus_9425#0 TCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCC 120
consensus_9425#1 -CATACTTCATGAAA--TGG------TGAAAATAGTCAAGAAAAGGGTATGTATATAAGT 62
* * ** **** ** *** * * ****** * * ** *
consensus_9425#0 TTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCGGAT 180
consensus_9425#1 TTAA---ACCTTAAAAGTTAAAATTGTCTG-GTTAGTTGTAAACTCTTTAAATTTTAACG 118
** ******* * ** * * * * * ***
consensus_9425#0 TTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCT 240
consensus_9425#1 CCTTATTCTTTTGAGCTTTTA---TCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCT 175
** *** * * * * * * ** ** * * **
consensus_9425#0 GGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGAT 300
consensus_9425#1 GATAGAC-ACTTGGCAAGAAG-----TTTTTGGCGGGGTACGTGCAAGATATCCACAATA 229
* * *** * * * * * * *** ** * ** * * * *
consensus_9425#0 CTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAA 360
consensus_9425#1 CTACG-CAGCAT-ATCAGGAGCTCTTGGTATTGTTCCACTTATATCAAATATACTGATAT 287
** ** ** * * * * * * ** * * * ** * ** * *
consensus_9425#0 ACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGAT 420
consensus_9425#1 TCTAATTATCTTTG---ATTCTTCTTTCATGCTATTTTTTCTCCC--CAAAGGGTATAAC 342
* **** ** * ** *** ** **** * * ** * *
consensus_9425#0 GATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGA 480
consensus_9425#1 TCCAATAAGGTAATAAGAGAAT---TATTTTCATTTTTTTAAGATA-ACA-GCATCGTAA 397
* ** * ** * * ** * ** ** * *** * *** * ** * *
consensus_9425#0 AATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCT 540
consensus_9425#1 CAC------AATTGTTAAGCATGAGAGTG-TGGTCATGCTATTTCCAAA-----TAATAT 445
* *** ** *** * * ** * ***** * ** * * *
consensus_9425#0 GATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGC 600
consensus_9425#1 TATAGCTAGTTTAATATCAAACCATCGTGAACTAATTCAGTGACATTCCTGGAA--ACCT 503
**** * ** * * * * * ** * ** ** * * **
consensus_9425#0 AGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGT 660
consensus_9425#1 TGTTCACATGGCA-----GCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGT 558
* * ** ******************************************
consensus_9425#0 TCCAATATTTACTCCTCCACAGACTCAACCTCTGCAAAACTATCCTGCATCTTTACGCAG 720
consensus_9425#1 TCCAATATTTACTCCTCCACAGACTCAACCTCTGCAAAACTATCCTGCATCTTTACGCAG 618
************************************************************
consensus_9425#0 TGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGA 780
consensus_9425#1 TGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGA 678
************************************************************
consensus_9425#0 AATTCAGAATGCACGAGGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCC 840
consensus_9425#1 AATTCAGAATGCACGACGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCC 738
**************** *******************************************
consensus_9425#0 TAGTAACAGAGAGGGGCTTAGGCAAGAGGTCATTGTTGACCTGGTGGATCAATGCCGTTC 900
consensus_9425#1 TAGTAAC----------------------------------------------------- 745
*******
consensus_9425#0 ATACAAGCAGAGAGTGGTAGAGCTAGTAAACACTACCTCGAATGAGGAGTTGCTCAGCCA 960
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 GGGCCTTTCTTTGAATGATGATTTGCAGAGAGTTCTAGCAAAACATGATGCTATTGCTGC 1020
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 AGGCGTTGCAGTTAGGTTGGAGAAAACAAAATCTCTCCAAACCAAAATTGATAGTTCTCC 1080
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 ACCCGCAAATCCTGGGACTTCAAAAGCACCAGTTCAAAGTTCTTCAGGGACTGCAAGTGC 1140
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 CAGCAACCAATCTACCTTAGCACTTCCTGCTCCAGCATCATCCAGTAGTCCAAAAGCTCC 1200
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 TGCAGCACCAGTACCGGTTATCGACCTTCTTAGTGGAGATGATTACATCAAACCTGAACC 1260
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 TGCAAACTCCCTTGCACTTGTTCCTGTCACAGAATATTCAGCAGCTGATCAGAATGTGCT 1320
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 AGCTCTTGCAGACATGTTTGAGCAAAATAATGCCAACAGAAGCAACAATAACCTTACTAA 1380
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 CTCTTTTAATACATCGGCACCAAATTCAAATTTCCCTGCATCACAAGCATATCCTGCTCC 1440
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 AGTGCAACCTGCTCTGCCTCAGCATCCTGTTGCTTATTCAAATGGGGTTTCATCCAATGC 1500
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 CATCGTACCTTACTATGATGATCAAAATGGAGGCCTTCCACCACCACCATGGGAGATTCA 1560
consensus_9425#1 ------------------------------------------------------------
consensus_9425#0 GCA 1563
consensus_9425#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||