Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9429 cluster # 9429       Sequences # 6       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9429#0 length = 3424 sequences # 5  
 consensus_9429#1 length = 669 sequences # 1  
consensusID : consensus_9429#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 3424
fasta sequence 
                              [GAGGTGGGGGTGGGCTGTTCAACCTGTTTGACTGGAAGCGCAAGTCCCGGAAGAAGCTGTTCTCCAACTCACCCGAGGGTGCTAAGCTCGTGAAGAGAGGCGAAGAAACCTTGCCGTCTGGGCGCCTCCACTTGATTGATGATGATGAGGGGATTGGTGTGTCAAGCTTCAAAGGGAGCAGCGACTACAGCTGTGCTTCCTCGGTTACTGACGAGGAAGGGCGTGAGATGAAGGCGCCAGGAGTGGTGGCCAGGCTCATGGGCTTGGATGCCATGCCCTCTACCGGGGTCCCGGAGCCGTACTGCACACCATTCCGTGACACACGGTCGTTTAGGGACAGCCAGAGCCTAAAGAGAAGCCCAGAGTACTCCGGGAGTGACCAGTTCAGTTATGTGCCACGAAGAGTTGATGGCTACATGAGGAAGCCATTGGATCTGAGAGCTCAGAAGATGCCGAGCAGCCCGATTGAGAGGTTCCAGATAGAAACATTGCCGCCAAGGTCAGCCAAACCCTTACCAATGTCCCATCACAGATTGTTATCTCCAATCAAGAATCCGGGATTTAGTTCAGCAAGAAATGCGGCTCAAATCATGGAGGCAGCAGCCAAGATTCTTGAGCCAAGGCCACAGGTCAGTTCTAGGGAGAAAATCTGCTCATACAGTCCTGCGCGGATTCCTTTGAGGATTTCTGAGACACGGGAGAATATCCCAGCTTCTCAGAGGGCAGTGTCTCGGCAGCTGCAGTCATCTCGGACCAATCTTGAGCTGCCTGATGTGAGATTTTCCAGGGGGCAGCAAATGAACAGGAGCTGGAATAGCGAAGATGACATAGTGATCTTTAGGACTTCATCTGATTCTTATGAGATTAATAACCCTGGCTTTTCAAAGAACAACAAGGGGAAGTCCATTTCATTGGCACTGCAGGCAAAGGTGAATGTGCAAAAGAGAGAAGGATTGGGTTCTTCTGGGAAGAATTCAGGAGGACAGAAAGATCGTGATGAGTGCAGAACAAGCCAACCTTTTAGGAGTCAGTCCAATGCCCAGAAGAATAAGCAGCAGAAGAAGCCGTCATCATCAGGTACTTCCTCCCCTGTCCTTAGGCAAAACAACCAGAAACAAAATTCTATGGTAAGCAGAGGAAAGTCAGCACCAAACAAATCAGTCTCAAGCCAGCAAGGTAGAAAGATGGCTGGAGATTCCTCAACTGGGAAGCTGAAGAATGCAAGCAAAATATCTAAAGGTGGCAGCAGAAAGGATATTGTAGAAAGCATAAGTTGTGATAAGGAAGGTTCATCGTCAAACAACAAGGACTTTCCACAAAAGAAGCGTTTGATAGAGAGGAACTCCACCAATGAGAAGGGTATGTTCGTGCCTGAAAAATCAGCAGCTAGACTTCAGAAGCAAGTTCAACCTAATGTTGTCATGGATGAGCACATTAAGTGGAACAACGATAGTAAAGATTCTACAGATGTAGTATCATTTACCTTTACCTCACCATTGGTTAAACCATCAGCAGGACCCTCCAGACTGTCAGGGAAGTGGGATACAAGAAGCAATTTTAATTTGGATGCCATAAATGAGAAGGATGATTCAGACAAAAAGTCCGAAGGGCTCTCATCAGTAGGATTGAACTTTGTAAATGGTGATGCTTTGAGCCTTCTCCTAGAAAAGAAACTAAAGGAGCTAACATCAAAGATTGAGCCATCCATCAACTTTACTAGGGGCGACACATTTGTGCCCGCAAACTTTTCCTTGGAAGAGCCCGTGGTCTCCTCTTCCAGCAATTGGGATATGGAAAGCGGAGTATTTGACTGCAGCCCTTCTGAAGGAAAACCTTCTCAATATGTTGATTATTGCCAATCAGCGCAGTCATCAACCAAAGGCCAAATTTTCCGTGGAAGTAAATTACAGGTGGAGGAACCAGAAGAATGCAGCAGCATAAGCAACGCAAGGAAAGAACAGGAGCATGAAGATTTAAGTCCCCTCTCTGTTCTTGAACCAACCTTTCTAAATGAGAGTTGCTGGTCTTCTGATTGCTGCTCAGGCAGTAGCGATGGAAGCAAAGGATATTCATCATCTTCTGAAGTTAAAAACATGCCAAAGAATTTCCTAAGCAATCCACCATCAGTGGATGCTGAGGCCAAGACAACAGATTCAGTGTCTTCTTCATCGATTGATGCATCAGACACCTCAGCATCAATAGATGCGTCGGACATCTCAGATATCACCCAATGTTCAAAGAAATCTAGAAACTCAGAGCTGGAGTACATTGGGGATGTTCTAGGCAATGTCAACCTGACAAAGGGTGGATTGGGGTCATTATTCATCAGTCAAGATGATGTATCGGTGATGGACCCCCACCTCTTTAACAAATTGGAGAGCATGAACTTGTATACACAAGGGAAAAAAAATTTGGACCGGCGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAATGCCTGGAGACGAGACGTCTCACATACTTCAGGGCAGGATATGCAGCATGGAGCAAAGGGATGGCAGCGATGAGCAGGGGCATAGAAACTGAAGTCTGCAATGAGATAGGTGGTTGGAGGAGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACAGGAGAAGAGTTGGAGAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAATCAGTTATATATATGTGTTGATTTGAGACTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNANNNNANNNNNNNNNAANNNNNNNNGGGGGGGGNNNNGNAAAAAAAAANNNNAAAAAAGAAANAANAANANNNNCCCAACAANNNNNNNNAAAAAAAANNNNGGNNNGAAAAAAANGGNNGGNAACAAAAAAAAANNNGGGAGGGAAACCACCTTNNCCCAANNGNAAAAAAAAAAAAAGCCCCCCCCNGCCCCCCCCAAAANNNGGACCCCCAAGGGGAAGGGGGCCCCCCCNNACGAACAAAAACCCGGGGGGGNGGGGGCCCCCCCNACCCCCCCCCANCCCGCCCCACCCCGGCNTTTTTTTTTTTTCTTTTNTCCCTTTCTGGGTTTCCCCACATTTATAAGGTCTTCTTAGTTGTTTTTTTTTCTCCCCCCCCAAAATTTTTGGGGTGGTCTTGGGGTCTCCTATAGATTTTCCTCTTTCGACCC]

[+] EMBL AK069222             [GAGGTGGGGGTGGGCTGTTCAACCTGTTTGACTGGAAGCGCAAGTCCCGGAAGAAGCTGTTCTCCAACTCACCCGAGGGTGCTAAGCTCGTGAAGAGAGGCGAAGAAACCTTGCCGTCTGGGCGCCTCCACTTGATTGATGATGATGAGGGGATTGGTGTGTCAAGCTTCAAAGGGAGCAGCGACTACAGCTGTGCTTCCTCGGTTACTGACGAGGAAGGGCGTGAGATGAAGGCGCCAGGAGTGGTGGCCAGGCTCATGGGCTTGGATGCCATGCCCTCTACCGGGGTCCCGGAGCCGTACTGCACACCATTCCGTGACACACGGTCGTTTAGGGACAGCCAGAGCCTAAAGAGAAGCCCAGAGTACTCCGGGAGTGACCAGTTCAGTTATGTGCCACGAAGAGTTGATGGCTACATGAGGAAGCCATTGGATCTGAGAGCTCAGAAGATGCCGAGCAGCCCGATTGAGAGGTTCCAGATAGAAACATTGCCGCCAAGGTCAGCCAAACCCTTACCAATGTCCCATCACAGATTGTTATCTCCAATCAAGAATCCGGGATTTAGTTCAGCAAGAAATGCGGCTCAAATCATGGAGGCAGCAGCCAAGATTCTTGAGCCAAGGCCACAGGTCAGTTCTAGGGAGAAAATCTGCTCATACAGTCCTGCGCGGATTCCTTTGAGGATTTCTGAGACACGGGAGAATATCCCAGCTTCTCAGAGGGCAGTGTCTCGGCAGCTGCAGTCATCTCGGACCAATCTTGAGCTGCCTGATGTGAGATTTTCCAGGGGGCAGCAAATGAACAGGAGCTGGAATAGCGAAGATGACATAGTGATCTTTAGGACTTCATCTGATTCTTATGAGATTAATAACCCTGGCTTTTCAAAGAACAACAAGGGGAAGTCCATTTCATTGGCACTGCAGGCAAAGGTGAATGTGCAAAAGAGAGAAGGATTGGGTTCTTCTGGGAAGAATTCAGGAGGACAGAAAGATCGTGATGAGTGCAGAACAAGCCAACCTTTTAGGAGTCAGTCCAATGCCCAGAAGAATAAGCAGCAGAAGAAGCCGTCATCATCAGGTACTTCCTCCCCTGTCCTTAGGCAAAACAACCAGAAACAAAATTCTATGGTAAGCAGAGGAAAGTCAGCACCAAACAAATCAGTCTCAAGCCAGCAAGGTAGAAAGATGGCTGGAGATTCCTCAACTGGGAAGCTGAAGAATGCAAGCAAAATATCTAAAGGTGGCAGCAGAAAGGATATTGTAGAAAGCATAAGTTGTGATAAGGAAGGTTCATCGTCAAACAACAAGGACTTTCCACAAAAGAAGCGTTTGATAGAGAGGAACTCCACCAATGAGAAGGGTATGTTCGTGCCTGAAAAATCAGCAGCTAGACTTCAGAAGCAAGTTCAACCTAATGTTGTCATGGATGAGCACATTAAGTGGAACAACGATAGTAAAGATTCTACAGATGTAGTATCATTTACCTTTACCTCACCATTGGTTAAACCATCAGCAGGACCCTCCAGACTGTCAGGGAAGTGGGATACAAGAAGCAATTTTAATTTGGATGCCATAAATGAGAAGGATGATTCAGACAAAAAGTCCGAAGGGCTCTCATCAGTAGGATTGAACTTTGTAAATGGTGATGCTTTGAGCCTTCTCCTAGAAAAGAAACTAAAGGAGCTAACATCAAAGATTGAGCCATCCATCAACTTTACTAGGGGCGACACATTTGTGCCCGCAAACTTTTCCTTGGAAGAGCCCGTGGTCTCCTCTTCCAGCAATTGGGATATGGAAAGCGGAGTATTTGACTGCAGCCCTTCTGAAGGAAAACCTTCTCAATATGTTGATTATTGCCAATCAGCGCAGTCATCAACCAAAGGCCAAATTTTCCGTGGAAGTAAATTACAGGTGGAGGAACCAGAAGAATGCAGCAGCATAAGCAACGCAAGGAAAGAACAGGAGCATGAAGATTTAAGTCCCCTCTCTGTTCTTGAACCAACCTTTCTAAATGAGAGTTGCTGGTCTTCTGATTGCTGCTCAGGCAGTAGCGATGGAAGCAAAGGATATTCATCATCTTCTGAAGTTAAAAACATGCCAAAGAATTTCCTAAGCAATCCACCATCAGTGGATGCTGAGGCCAAGACAACAGATTCAGTGTCTTCTTCATCGATTGATGCATCAGACACCTCAGCATCAATAGATGCGTCGGACATCTCAGATATCACCCAATGTTCAAAGAAATCTAGAAACTCAGAGCTGGAGTACATTGGGGATGTTCTAGGCAATGTCAACCTGACAAAGGGTGGATTGGGGTCATTATTCATCAGTCAAGATGATGTATCGGTGATGGACCCCCACCTCTTTAACAAATTGGAGAGCATGAACTTGTATACACAAGGGAAAAAAAATTTGGACCGGCGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAATGCCTGGAGACGAGACGTCTCACATACTTCAGGGCAGGATATGCAGCATGGAGCAAAGGGATGGCAGCGATGAGCAGGGGCATAGAAACTGAAGTCTGCAATGAGATAGGTGGTTGGAGGAGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACAGGAGAAGAGTTGGAGAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAATCAGTTATATATATGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BE039646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATGCCTGGAGACGAGACGTCTCACATACTTCCGGGCAGGATATGCAGCATGGAGCAAAGGGATGGCAGCGATGAGCAGGGGCATAGAAACTGAAGTCTGCAATGAGATCAGTGGTTGGAGGAGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTGGAGGAGTTTGAGACAGGAGAAGAGTTGGAGAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAATCAGTTATATATATGTGTTGATTTGAGACTGCNNANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNANNNNANNNNNNNNNAANNNNNNNNGGGGGGGGNNNNGNAAAAAAAAANNNNAAAAAAGAAANAANAANANNNNCCCAACAANNNNNNNNAAAAAAAANNNNGGNNNGAAAAAAANGGNNGGNAACAAAAAAAAANNNGGGAGGGAAACCACCTTNNCCCAANNGNAAAAAAAAAAAAAGCCCCCCCCNGCCCCCCCCAAAANNNGGACCCCCAAGGGGAAGGGGGCCCCCCCNNACGAACAAAAACCCGGGGGGGNGGGGGCCCCCCCNACCCCCCCCCANCCCGCCCCACCCCGGCNTTTTTTTTTTTTCTTTTNTCCCTTTCTGGGTTTCCCCACATTTATAAGGTCTTCTTAGTTGTTTTTTTTTCTCCCCCCCCAAAATTTTTGGGGTGGTCTTGGGGTCTCCTATAGATTTTCCTCTTTCGACCC]
[+] EMBL AU069231             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATATGCAGCATGGAGCAAAGGGATGGCAGCGATGA NAGGGGCATAGAAACTGAAGTCTTCAATGAGATAGGTGGTTGGAGGAGCATGGGCANATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACAGGAGAAGAGTTGGAGAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCG CGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAATCAGTTATATATATGTGTTGATTTGAGACTCCAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU063133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATATGCANCATGGAGCAAAGGGATGGCAGCGATGAGCAGGGGCATAGAAACTGAAGTCTGCAATGAGATAGGTGGTTGGAGGAGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACAGGAGAAGAGTTGGAGAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU092729             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATGCAGCATGGAGCAAAGGGATGGCAGCGATGAGCAGGGGCATAGAAACTGAAGTCTGCAATGAGATAGGTGGTTGGAGGAGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACAGGAGAAGAGTTGGAGAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAATCAGTTATATATATGTGTTGATTTGAGACTGCAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_9429#0
GAGGTGGGGGTGGGCTGTTCAACCTGTTTGACTGGAAGCGCAAGTCCCGGAAGAAGCTGT
TCTCCAACTCACCCGAGGGTGCTAAGCTCGTGAAGAGAGGCGAAGAAACCTTGCCGTCTG
GGCGCCTCCACTTGATTGATGATGATGAGGGGATTGGTGTGTCAAGCTTCAAAGGGAGCA
GCGACTACAGCTGTGCTTCCTCGGTTACTGACGAGGAAGGGCGTGAGATGAAGGCGCCAG
GAGTGGTGGCCAGGCTCATGGGCTTGGATGCCATGCCCTCTACCGGGGTCCCGGAGCCGT
ACTGCACACCATTCCGTGACACACGGTCGTTTAGGGACAGCCAGAGCCTAAAGAGAAGCC
CAGAGTACTCCGGGAGTGACCAGTTCAGTTATGTGCCACGAAGAGTTGATGGCTACATGA
GGAAGCCATTGGATCTGAGAGCTCAGAAGATGCCGAGCAGCCCGATTGAGAGGTTCCAGA
TAGAAACATTGCCGCCAAGGTCAGCCAAACCCTTACCAATGTCCCATCACAGATTGTTAT
CTCCAATCAAGAATCCGGGATTTAGTTCAGCAAGAAATGCGGCTCAAATCATGGAGGCAG
CAGCCAAGATTCTTGAGCCAAGGCCACAGGTCAGTTCTAGGGAGAAAATCTGCTCATACA
GTCCTGCGCGGATTCCTTTGAGGATTTCTGAGACACGGGAGAATATCCCAGCTTCTCAGA
GGGCAGTGTCTCGGCAGCTGCAGTCATCTCGGACCAATCTTGAGCTGCCTGATGTGAGAT
TTTCCAGGGGGCAGCAAATGAACAGGAGCTGGAATAGCGAAGATGACATAGTGATCTTTA
GGACTTCATCTGATTCTTATGAGATTAATAACCCTGGCTTTTCAAAGAACAACAAGGGGA
AGTCCATTTCATTGGCACTGCAGGCAAAGGTGAATGTGCAAAAGAGAGAAGGATTGGGTT
CTTCTGGGAAGAATTCAGGAGGACAGAAAGATCGTGATGAGTGCAGAACAAGCCAACCTT
TTAGGAGTCAGTCCAATGCCCAGAAGAATAAGCAGCAGAAGAAGCCGTCATCATCAGGTA
CTTCCTCCCCTGTCCTTAGGCAAAACAACCAGAAACAAAATTCTATGGTAAGCAGAGGAA
AGTCAGCACCAAACAAATCAGTCTCAAGCCAGCAAGGTAGAAAGATGGCTGGAGATTCCT
CAACTGGGAAGCTGAAGAATGCAAGCAAAATATCTAAAGGTGGCAGCAGAAAGGATATTG
TAGAAAGCATAAGTTGTGATAAGGAAGGTTCATCGTCAAACAACAAGGACTTTCCACAAA
AGAAGCGTTTGATAGAGAGGAACTCCACCAATGAGAAGGGTATGTTCGTGCCTGAAAAAT
CAGCAGCTAGACTTCAGAAGCAAGTTCAACCTAATGTTGTCATGGATGAGCACATTAAGT
GGAACAACGATAGTAAAGATTCTACAGATGTAGTATCATTTACCTTTACCTCACCATTGG
TTAAACCATCAGCAGGACCCTCCAGACTGTCAGGGAAGTGGGATACAAGAAGCAATTTTA
ATTTGGATGCCATAAATGAGAAGGATGATTCAGACAAAAAGTCCGAAGGGCTCTCATCAG
TAGGATTGAACTTTGTAAATGGTGATGCTTTGAGCCTTCTCCTAGAAAAGAAACTAAAGG
AGCTAACATCAAAGATTGAGCCATCCATCAACTTTACTAGGGGCGACACATTTGTGCCCG
CAAACTTTTCCTTGGAAGAGCCCGTGGTCTCCTCTTCCAGCAATTGGGATATGGAAAGCG
GAGTATTTGACTGCAGCCCTTCTGAAGGAAAACCTTCTCAATATGTTGATTATTGCCAAT
CAGCGCAGTCATCAACCAAAGGCCAAATTTTCCGTGGAAGTAAATTACAGGTGGAGGAAC
CAGAAGAATGCAGCAGCATAAGCAACGCAAGGAAAGAACAGGAGCATGAAGATTTAAGTC
CCCTCTCTGTTCTTGAACCAACCTTTCTAAATGAGAGTTGCTGGTCTTCTGATTGCTGCT
CAGGCAGTAGCGATGGAAGCAAAGGATATTCATCATCTTCTGAAGTTAAAAACATGCCAA
AGAATTTCCTAAGCAATCCACCATCAGTGGATGCTGAGGCCAAGACAACAGATTCAGTGT
CTTCTTCATCGATTGATGCATCAGACACCTCAGCATCAATAGATGCGTCGGACATCTCAG
ATATCACCCAATGTTCAAAGAAATCTAGAAACTCAGAGCTGGAGTACATTGGGGATGTTC
TAGGCAATGTCAACCTGACAAAGGGTGGATTGGGGTCATTATTCATCAGTCAAGATGATG
TATCGGTGATGGACCCCCACCTCTTTAACAAATTGGAGAGCATGAACTTGTATACACAAG
GGAAAAAAAATTTGGACCGGCGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAAT
GCCTGGAGACGAGACGTCTCACATACTTCAGGGCAGGATATGCAGCATGGAGCAAAGGGA
TGGCAGCGATGAGCAGGGGCATAGAAACTGAAGTCTGCAATGAGATAGGTGGTTGGAGGA
GCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCA
CATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACAGGAGAAGAGTTGGAGAGGGAAATAC
TGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGA
GTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTT
AAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAATCAGTTATATATAT
GTGTTGATTTGAGACTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNANNNNAN
NNNNNNNNAANNNNNNNNGGGGGGGGNNNNGNAAAAAAAAANNNNAAAAAAGAAANAANA
ANANNNNCCCAACAANNNNNNNNAAAAAAAANNNNGGNNNGAAAAAAANGGNNGGNAACA
AAAAAAAANNNGGGAGGGAAACCACCTTNNCCCAANNGNAAAAAAAAAAAAAGCCCCCCC
CNGCCCCCCCCAAAANNNGGACCCCCAAGGGGAAGGGGGCCCCCCCNNACGAACAAAAAC
CCGGGGGGGNGGGGGCCCCCCCNACCCCCCCCCANCCCGCCCCACCCCGGCNTTTTTTTT
TTTTCTTTTNTCCCTTTCTGGGTTTCCCCACATTTATAAGGTCTTCTTAGTTGTTTTTTT
TTCTCCCCCCCCAAAATTTTTGGGGTGGTCTTGGGGTCTCCTATAGATTTTCCTCTTTCG
ACCC

consensusID : consensus_9429#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence 
                              [CGTTTTGAGCCCCCCCAANGGCGGGCCNTCNAACCCCAGNCAAGATTTNAANCNAGCTGAACCGGGAGATTTAAGCACACCCCCAAGGGGGGGCCATATCCACCACCAGATAAAACGTGAGGACCCCACTCTTACAAATGGAGAGCATGAACTGAAAACACAAGGAAAAAAATTTGGACCGCGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAATGCCTGGAGACGAGACGTCTCACATACTTCCGGCCAGGATATGCAGCCATGGACAAAGGGATGCAGCGATGAGCCAGGGGCATAGAAACTGAAGTCTGCAATGAGATCAGTGTTGGAGGAGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACCAGGAGAAGAGTTGGAGAAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCCATTTGATTTGTCGACCAGACTTGATCAAATCAGTATATATATGTGTTGATTTGAGACTCCAAAAAAAAAA]

[+] EMBL BM037895             [CGTTTTGAGCCCCCCCAANGGCGGGCCNTCNAACCCCAGNCAAGATTTNAANCNAGCTGAACCGGGAGATTTAAGCACACCCCCAAGGGGGGGCCATATCCACCACCAGATAAAACGTGAGGACCCCACTCTTACAAATGGAGAGCATGAACTGAAAACACAAGGAAAAAAATTTGGACCGCGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAATGCCTGGAGACGAGACGTCTCACATACTTCCGGCCAGGATATGCAGCCATGGACAAAGGGATGCAGCGATGAGCCAGGGGCATAGAAACTGAAGTCTGCAATGAGATCAGTGTTGGAGGAGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACCAGGAGAAGAGTTGGAGAAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCCATTTGATTTGTCGACCAGACTTGATCAAATCAGTATATATATGTGTTGATTTGAGACTCCAAAAAAAAAA]




>consensus_9429#1
CGTTTTGAGCCCCCCCAANGGCGGGCCNTCNAACCCCAGNCAAGATTTNAANCNAGCTGA
ACCGGGAGATTTAAGCACACCCCCAAGGGGGGGCCATATCCACCACCAGATAAAACGTGA
GGACCCCACTCTTACAAATGGAGAGCATGAACTGAAAACACAAGGAAAAAAATTTGGACC
GCGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAATGCCTGGAGACGAGACGTCT
CACATACTTCCGGCCAGGATATGCAGCCATGGACAAAGGGATGCAGCGATGAGCCAGGGG
CATAGAAACTGAAGTCTGCAATGAGATCAGTGTTGGAGGAGCATGGGCGAATGGGTGGAG
GATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGATTTTCGGGTG
GAGGAGTTCGAGACCAGGAGAAGAGTTGGAGAAGGGAAATACTGAGCTCACTGGTCGACG
AGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTG
ATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTTGTTAAGTTATATCCATCCCCA
TTTGATTTGTCGACCAGACTTGATCAAATCAGTATATATATGTGTTGATTTGAGACTCCA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9429#0      GAGGTGGGGGTGGGCTGTTCAACCTGTTTGACTGGAAGCGCAAGTCCCGGAAGAAGCTGT 60
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TCTCCAACTCACCCGAGGGTGCTAAGCTCGTGAAGAGAGGCGAAGAAACCTTGCCGTCTG 120
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GGCGCCTCCACTTGATTGATGATGATGAGGGGATTGGTGTGTCAAGCTTCAAAGGGAGCA 180
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GCGACTACAGCTGTGCTTCCTCGGTTACTGACGAGGAAGGGCGTGAGATGAAGGCGCCAG 240
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GAGTGGTGGCCAGGCTCATGGGCTTGGATGCCATGCCCTCTACCGGGGTCCCGGAGCCGT 300
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      ACTGCACACCATTCCGTGACACACGGTCGTTTAGGGACAGCCAGAGCCTAAAGAGAAGCC 360
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CAGAGTACTCCGGGAGTGACCAGTTCAGTTATGTGCCACGAAGAGTTGATGGCTACATGA 420
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GGAAGCCATTGGATCTGAGAGCTCAGAAGATGCCGAGCAGCCCGATTGAGAGGTTCCAGA 480
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TAGAAACATTGCCGCCAAGGTCAGCCAAACCCTTACCAATGTCCCATCACAGATTGTTAT 540
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CTCCAATCAAGAATCCGGGATTTAGTTCAGCAAGAAATGCGGCTCAAATCATGGAGGCAG 600
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CAGCCAAGATTCTTGAGCCAAGGCCACAGGTCAGTTCTAGGGAGAAAATCTGCTCATACA 660
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GTCCTGCGCGGATTCCTTTGAGGATTTCTGAGACACGGGAGAATATCCCAGCTTCTCAGA 720
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GGGCAGTGTCTCGGCAGCTGCAGTCATCTCGGACCAATCTTGAGCTGCCTGATGTGAGAT 780
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TTTCCAGGGGGCAGCAAATGAACAGGAGCTGGAATAGCGAAGATGACATAGTGATCTTTA 840
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GGACTTCATCTGATTCTTATGAGATTAATAACCCTGGCTTTTCAAAGAACAACAAGGGGA 900
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      AGTCCATTTCATTGGCACTGCAGGCAAAGGTGAATGTGCAAAAGAGAGAAGGATTGGGTT 960
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CTTCTGGGAAGAATTCAGGAGGACAGAAAGATCGTGATGAGTGCAGAACAAGCCAACCTT 1020
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TTAGGAGTCAGTCCAATGCCCAGAAGAATAAGCAGCAGAAGAAGCCGTCATCATCAGGTA 1080
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CTTCCTCCCCTGTCCTTAGGCAAAACAACCAGAAACAAAATTCTATGGTAAGCAGAGGAA 1140
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      AGTCAGCACCAAACAAATCAGTCTCAAGCCAGCAAGGTAGAAAGATGGCTGGAGATTCCT 1200
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CAACTGGGAAGCTGAAGAATGCAAGCAAAATATCTAAAGGTGGCAGCAGAAAGGATATTG 1260
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TAGAAAGCATAAGTTGTGATAAGGAAGGTTCATCGTCAAACAACAAGGACTTTCCACAAA 1320
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      AGAAGCGTTTGATAGAGAGGAACTCCACCAATGAGAAGGGTATGTTCGTGCCTGAAAAAT 1380
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CAGCAGCTAGACTTCAGAAGCAAGTTCAACCTAATGTTGTCATGGATGAGCACATTAAGT 1440
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GGAACAACGATAGTAAAGATTCTACAGATGTAGTATCATTTACCTTTACCTCACCATTGG 1500
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TTAAACCATCAGCAGGACCCTCCAGACTGTCAGGGAAGTGGGATACAAGAAGCAATTTTA 1560
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      ATTTGGATGCCATAAATGAGAAGGATGATTCAGACAAAAAGTCCGAAGGGCTCTCATCAG 1620
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TAGGATTGAACTTTGTAAATGGTGATGCTTTGAGCCTTCTCCTAGAAAAGAAACTAAAGG 1680
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      AGCTAACATCAAAGATTGAGCCATCCATCAACTTTACTAGGGGCGACACATTTGTGCCCG 1740
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CAAACTTTTCCTTGGAAGAGCCCGTGGTCTCCTCTTCCAGCAATTGGGATATGGAAAGCG 1800
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      GAGTATTTGACTGCAGCCCTTCTGAAGGAAAACCTTCTCAATATGTTGATTATTGCCAAT 1860
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CAGCGCAGTCATCAACCAAAGGCCAAATTTTCCGTGGAAGTAAATTACAGGTGGAGGAAC 1920
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CAGAAGAATGCAGCAGCATAAGCAACGCAAGGAAAGAACAGGAGCATGAAGATTTAAGTC 1980
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CCCTCTCTGTTCTTGAACCAACCTTTCTAAATGAGAGTTGCTGGTCTTCTGATTGCTGCT 2040
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CAGGCAGTAGCGATGGAAGCAAAGGATATTCATCATCTTCTGAAGTTAAAAACATGCCAA 2100
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      AGAATTTCCTAAGCAATCCACCATCAGTGGATGCTGAGGCCAAGACAACAGATTCAGTGT 2160
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CTTCTTCATCGATTGATGCATCAGACACCTCAGCATCAATAGATGCGTCGGACATCTCAG 2220
consensus_9429#1      ----------------------------------------------------CGTTTT-G 7
                                                                          * * *  *

consensus_9429#0      ATATCACCCAATGTTCAAAGAAATCTAGAAACTCAGAGCTGGAGTACATTGGGGATGTTC 2280
consensus_9429#1      AGCCCCCCCAANGGC-----GGGCCNTCNAACCCCAGNCAAGATTTNAANCNAGCTGAAC 62
                      *   * ***** *           *    *** *    *  ** *  *     * **  *

consensus_9429#0      TAGGCAATGTCAACCTGACAAAGGGTGGATTGGGGTCATTATTCATCAGTCAAGATGATG 2340
consensus_9429#1      CGGGAGATTTAAGCACACCCCCAAGGGG----GGGCCAT-ATCCACCA--CCAGATAAAA 115
                        **  ** * * *    *     * **    *** *** ** ** **  * **** *  

consensus_9429#0      TATCGGTGATGGACCCCCACCTCTTTAACAAATTGGAGAGCATGAACTTGTATACACAAG 2400
consensus_9429#1      C----GTGA-GGACCC----CACTCTTACAAAT-GGAGAGCATGAACT-GAAAACACAAG 164
                           **** ******    * ** * ****** ************** * * *******

consensus_9429#0      GGAAAAAAAATTTGGACCGGCGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAAT 2460
consensus_9429#1      G--AAAAAAATTTGGACCG-CGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAAT 221
                      *  **************** ****************************************

consensus_9429#0      GCCTGGAGACGAGACGTCTCACATACTTCAGGGCAGGATATGCAGCATGGAGCAAAGGGA 2520
consensus_9429#1      GCCTGGAGACGAGACGTCTCACATACTTCCGGCCAGGATATGCAGCCATGGACAAAGGGA 281
                      ***************************** ** *************   *  ********

consensus_9429#0      TGGCAGCGATGAGC-AGGGGCATAGAAACTGAAGTCTGCAATGAGATAGGTGGTTGGAGG 2579
consensus_9429#1      TG-CAGCGATGAGCCAGGGGCATAGAAACTGAAGTCTGCAATGAGATCAGTG-TTGGAGG 339
                      ** *********** ********************************  *** *******

consensus_9429#0      AGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGC 2639
consensus_9429#1      AGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGC 399
                      ************************************************************

consensus_9429#0      ACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGAC-AGGAGAAGAGTTGGAGA-GGGAAA 2697
consensus_9429#1      ACATGGGTTGATTTTCGGGTGGAGGAGTTCGAGACCAGGAGAAGAGTTGGAGAAGGGAAA 459
                      *********************************** ***************** ******

consensus_9429#0      TACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCA 2757
consensus_9429#1      TACTGAGCTCACTGGTCGACGAGGTGATCGGCGACGTCTTTGTGAGACGACGGGACGGCA 519
                      ************************************************************

consensus_9429#0      GGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTT 2817
consensus_9429#1      GGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTTTGTTTT 579
                      ************************************************************

consensus_9429#0      GTTAAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAATCAGTTATATA 2877
consensus_9429#1      GTTAAGTTATATCCATCCCCATTTGATTTGTCGACCAGACTTGATCAAATCAGT-ATATA 638
                      ******************* ********************************** *****

consensus_9429#0      TATGTGTTGATTTGAGACTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2937
consensus_9429#1      TATGTGTTGATTTGAGACTCCAAAAAAAAAA----------------------------- 669
                      ******************* ***** *****                             

consensus_9429#0      AAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNANNN 2997
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      NANNNNNNNNNAANNNNNNNNGGGGGGGGNNNNGNAAAAAAAAANNNNAAAAAAGAAANA 3057
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      ANAANANNNNCCCAACAANNNNNNNNAAAAAAAANNNNGGNNNGAAAAAAANGGNNGGNA 3117
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      ACAAAAAAAAANNNGGGAGGGAAACCACCTTNNCCCAANNGNAAAAAAAAAAAAAGCCCC 3177
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      CCCCNGCCCCCCCCAAAANNNGGACCCCCAAGGGGAAGGGGGCCCCCCCNNACGAACAAA 3237
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      AACCCGGGGGGGNGGGGGCCCCCCCNACCCCCCCCCANCCCGCCCCACCCCGGCNTTTTT 3297
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TTTTTTTCTTTTNTCCCTTTCTGGGTTTCCCCACATTTATAAGGTCTTCTTAGTTGTTTT 3357
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TTTTTCTCCCCCCCCAAAATTTTTGGGGTGGTCTTGGGGTCTCCTATAGATTTTCCTCTT 3417
consensus_9429#1      ------------------------------------------------------------
                                                                                  

consensus_9429#0      TCGACCC 3424
consensus_9429#1      -------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)