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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1233 fasta sequence
[CCCTTCCTCCCCTTCGCCTCCCTCTCCGCCGCCGCCGCCGCCGCCGCAGCCATGGCGACGCGGCGATGCCTCCTCCGCCTCCTCTCGCGCCGCCTCCTCGCCCACACCCCTCAACCCGCGTCGCTGGCCTCGATCGCGACGCGAACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCAGGCATCCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACTACGCGTCGAACCGATCCTCCGGCGACGAGGAGGAGGGGGACGACGACGATCACTACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAAGCCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGAGCAATGGCGACTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGTTAATTTTGAATCGAGTTCTCATGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAAAAAGAAAAGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAACCAACATTGAAGGAATAGATAAGTCAGAGGCCACTGCTGTTGCTGCTTAAA--TTAAGATGAATAATG--AAGG-AACATGGCTT-CATGCCCAGGCAGT-CCTTCATACTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGCTTATTGTCAGTCACTGATTGAAAGAACCATATCTGAAGGTCTTGTCTATGTATCCACATTTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTATTTAGAAATCTGAACTGAAATTGTACATGCTTATGCTAATACAACCAGAT]
[+] EMBL AK068460 [CCCTTCCTCCCCTTCGCCTCCCTCTCCGCCGCCGCCGCCGCCGCCGCAGCCATGGCGACGCGGCGATGCCTCCTCCGCCTCCTCTCGCGCCGCCTCCTCGCCCACACCCCTCAACCCGCGTCGCTGGCCTCGATCGCGACGCGAACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCAGGCATCCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACTACGCGTCGAACCGATCCTCCGGCGACGAGGAGGAGGGGGACGACGACGATCACTACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAAGCCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGAGCAATGGCGACTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGTTAATTTTGAATCGAGTTCTCATGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAAAAAGAAAAGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAACCAACATTGAAGGAATAGATAAGTCAGAGGCCACTGCTGTTGCTGCTTAAA TTAAGATGAATAATG AAGG AACATGGCTT CATGCCCAGGCAGT CCTTCATACTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGCTTATTGTCAGTCACTGATTGAAAGAACCATATCTGAAGGTCTTGTCTATGTATCCACATTTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTATTTAGAAATCTGAACTGAAATTGTACATGCTTATGCTAATACAACCAGAT]
[+] EMBL AK105327 [ CCTTCCTCCCCTTCGCCTCCCTCTCCGCCGCCGCCGCCGCCGCCGCAGCCATGGCGACGCGGCGATGCCTCCTCCGCCTCCTCTCGCGCCGCCTCCTCGCCCACACCCCTCAACCCGCGTTGCTGGCCTCGATCGCGACGCGAACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCAGGCATCCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACTACGCGTCGAACCGATCCTCCGGCGACGAGGAGGAGGGGGACGACGACGATCACTACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAAGCCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGAGCAATGGCGACTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGTTAATTTTGAATCGAGTTCTCATGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGT ]
[+] EMBL C98739 [ GCTTAAAATTTAAGATGAATAATGGNAAGGAAACATGGCTTNNATGCCCAGGCAGTCCCTTCATACTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGCTTATTGTCAGTCACTGATTGAAAGAACCATATCTGAAGGTCTTGTCTATGTATCCACATTTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTAaaaa ]
consensusID : consensus_9431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[CGGANACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCACNTCGCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACNACGCGTCGAACCGATCCNCCGGCGACGAGGAGGAGGGGGACGACGACGATCACNACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAACCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGGAGCAATGGCGACTTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGGTAATTGTGCACTTTTGAACGCAAC]
[+] EMBL C98738 [CGGANACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCACNTCGCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACNACGCGTCGAACCGATCCNCCGGCGACGAGGAGGAGGGGGACGACGACGATCACNACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAACCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGGAGCAATGGCGACTTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGGTAATTGTGCACTTTTGAACGCAAC]
consensusID : consensus_9431#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[ATCTGAAGGNCCCTGTCTATGTATCCACATCTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU092772 [ATCTGAAGGNCCCTGTCTATGTATCCACATCTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9431#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence
[GATCGCGGGCGGCCGCAATCTGAGANGTTAATTTTNANTTGCGATCGCNAGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAAAAAGAAANGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAAC]
[+] EMBL AU063189 [GATCGCGGGCGGCCGCAATCTGAGANGTTAATTTTNANTTGCGATCGCNAGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAAAAAGAAANGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 CCCTTCCTCCCCTTCGCCTCCCTCTCCGCCGCCGCCGCCGCCGCCGCAGCCATGGCGACG 60
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 CGGCGATGCCTCCTCCGCCTCCTCTCGCGCCGCCTCCTCGCCCACACCCCTCAACCCGCG 120
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 TCGCTGGCCTCGATCGCGACGCGAACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCAG 180
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 GCATCCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACTACGCGTCGAAC 240
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 CGATCCTCCGGCGACGAGGAGGAGGGGGACGACGACGATCACTACGACGAGGAGGGGAGC 300
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 GGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAAGCCCCCCAGCGGGAAG 360
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 ACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTC 420
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 GGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGT 480
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 TCGCATCAGTTTAAGGTGAGCAATGGCGACTCGATCTTCACGGAAAGGTTGAAGTTTTGC 540
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 GATGTGAATGATAAGTTAATTTTGAATCGAGTTCTCATGCTTGGGTCACAATCTCAAACA 600
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 GTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCC 660
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 CTAGATGCAAAGGTTATCATATTCAAAAAGAAAAGAAGAAAAAATTACCGTCGAACAAAG 720
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 GGCCATCGTCAGGAATTGACAAAGCTGAGAATAACCAACATTGAAGGAATAGATAAGTCA 780
consensus_9431#1 ------------------------------------------------------------
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 GAGGCCACTGCTGTTGCTGCTTAAATTAAGATGAATAATGAAGGAACATGGCTTCATGCC 840
consensus_9431#1 ----CGGANACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCACNTCGCCGCGTCCTCG 56
consensus_9431#2 ------------------------------------------------------------
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 CAGGCAGTCCTTCATACTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGC 900
consensus_9431#1 CCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACNACGCGTCGAACCGATCCNCCGGCGACG 116
consensus_9431#2 ------------------------------ATCTGAAGGNCCCTGTCTATGTATCCACAT 30
consensus_9431#3 ------------------------------------------------------------
consensus_9431#0 TTATTGTCAGTCACTGATTGAAAGAACCATATCTGAAGGTCT-TGTCTATGTATCCACAT 959
consensus_9431#1 AGGAGGAGGGGGACGACGACGATCACNACGACGAGGAGGGGAGCGGGGATGAGTGGGGGG 176
consensus_9431#2 CTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTT 90
consensus_9431#3 --------------GATCGCGGGCGGCCGCAATCTGAGANGTTAATTTTNANTTGCGATC 46
consensus_9431#0 TTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTT 1019
consensus_9431#1 AGGAGGAGGAGGAGGCCGTGGCGGCGAACCCCCCAGCGGGAAGACGGAGGAGGAGAAGGT 236
* * *
consensus_9431#2 GGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCT-T 149
consensus_9431#3 GCNAGCTTGGGTCACAATCTCAA---ACAGTCATTGGGAGGCCAACTCTTCCTGATGC-T 102
consensus_9431#0 GGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCT-T 1078
consensus_9431#1 GGCGGAGGCGGCGGAGATAGGGTAC-ACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGC 295
* * ** ** * * *
consensus_9431#2 TCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCA-ATGCATCAGT-GCCATGTATAC 207
consensus_9431#3 ACTGTTCATGCTGTCGT----TGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAA 158
consensus_9431#0 TCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCA-ATGCATCAGT-GCCATGTATAC 1136
consensus_9431#1 CCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGC-ATCA-GTTTAA 353
** ** * * * ** * ** * *
consensus_9431#2 CGTTCTAGCCATGAATAATGA-----AACTGAAAGTTTGTGGTTCCCATCTA---AAAAA 259
consensus_9431#3 AAAGAAANGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTG---ACAAA 215
consensus_9431#0 CGTTCTAGCCATGAATAATGA-----AACTGAAAGTTTGTGGTTCCCATCTATTTAGAAA 1191
consensus_9431#1 GGTGGAGCAATGGCGACTTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGAT 413
* * ** * ** * * *
consensus_9431#2 AAAAAAAAAAAAA----------------------------- 272
consensus_9431#3 GCTGAGAATAAC------------------------------ 227
consensus_9431#0 TCTGAACTGAAATTGTACATGCTTATGCTAATACAACCAGAT 1233
consensus_9431#1 AAGGTAATTGTGCACTTTTGAACGCAAC-------------- 441
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||