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Oryza sativa
cluster # 9443 cluster # 9443       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9443#0 length = 2156 sequences # 6  

consensusID : consensus_9443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2156
fasta sequence
                              [GGGCTCGAGCCGCAGCCGCCAACGTCCCAAGCGACCGAGCCAAGCGCGTCACCCGCCACACTGTCACAGACGCGACGCGCTCCCGCTCCCCGACGATGCCGGCGGCGGCGGCGCTGTCCGACGACGACCGCCTGGTCGTCGCCCACTGCGCCGCGCTCTCCTTCCCACCCGCCTCCCAGCCGCCGCCCCCTCCCACCACCTCCTCCTCCTCCTCGGGCGCCGGCGCGGGCGCCTCCTTCCAGGTGCACCACGCGTCCCACCCGTACCCCTGCGCCGCCTTCGCGTTCCCGCCCTCCTGGTCCGCCGCGCCCGGCTGGGCCGCCGCGGGGCGCGCGGCGTTCGGGGACGCGGAGGTGGACCCGTCCCTCTTCCCGTCGCTCCGCAGCGTCGGGAGCGGCGTCCCCGCGCGCGCCAACGCCGCGTTCCTCGCCTCCTTCGGCGCCCTCCTCGACGGCTCGCCGCTCCAGTCCGAGGTATCTAGAGCTGTGGCAGAAGAGAAGCGTATTGTATTCACAGGCCATTCATCAGGGGGTTCAATAGCTACCCTTGCTGCCATATGGTTTCTTGAGACCTGCACCAGGAGAGGCAGTGTTAATCAGGCACACCCATTTTGTGTAACCTTTGGGGCTCCTCTTGTTGGAGACAATACCTTTAACAATGCTGTTCGAAGGGAGGGCTGGTCACAGTGTATTTTGAATTTTGTCGTGCCAGTAG-ACATCATCCCCCGCATACCACTTACTCCGCTTGCATCTGCCACAGAAGGAATTCAAGCTGTTCTGGATTGGTTATCCCCTCAAACTCCGAACTTCTCGCCTTCTGGGATGCCACTCATCATAAGTCAGTTTTATGAAAATTTACTGAGAAGCACACTTTCTATTGCGAGCTATGAGGCCTGTTCCTTCATGGGATGCACTAGCTCGATCTTAGGAACATTGACTTCCTTCATTGAGCTCTCCCCTTACAGACCCTGTGGGACTTATCTTTTCTTGACAAGCAGTGAACAGCTGGCCGTTCTGACAAATTCAGATGCTGTATTGCAGTTGCTATTTTACTGCCTTCAGTTGGATCCCCAGCAACAATTGCGTGATGCTGCTGAGAGAAGTTTAAGTGCTCATTGGCAATATGAACCAATTAAGCAAAGCATGATGCAAGAGATAGTTTGCGTGGATTACTTGGG-AGTGGTTTCATCAACACTTCCTGGTAGGCAGATGAGTAGCACAATAGTTGGAGGCCTTGAACTGAGCAAGGAAGCTATGTTGAGCCTTTCTGCAGCTGGACAATGGGAGAAGCAAAGGGAGACAAACCAGGCAAAAATAGATGGTGCAAGCTGCACCAAAATTAGGGAAGCCCTCAAGTCTCTGAACGAGTACAAAAGGACATGTGAACTCCATGAAGTGAGCTACTATGATTCCTTCAAGCTTCAGCGTGAAGTACATGACTTTAATGCAAATGTTAGCAGGTTGGAACTAGCTGGACTCTGGGATGAGATAGTTGAAATGCTGCGAAGGCGTGAGCTGCCAGATGGTTTCGAAAGCCGACAAGATTGGGTGAATCTAGGAACCTTGTACCGCCGGTTGGTTGAGCCCTTAGACATTGCAAACTACTATAGGCATTCCAAGAACGAGGACACTGGCTCCTACCTCTCCAAGGGAAGGCCAAGACGTTACAAG-TACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGCAAAACATTCGAGGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACACAATACAATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCAAAAAAAA]

[+] EMBL AK100117             [GGGCTCGAGCCGCAGCCGCCAACGTCCCAAGCGACCGAGCCAAGCGCGTCACCCGCCACACTGTCACAGACGCGACGCGCTCCCGCTCCCCGACGATGCCGGCGGCGGCGGCGCTGTCCGACGACGACCGCCTGGTCGTCGCCCACTGCGCCGCGCTCTCCTTCCCACCCGCCTCCCAGCCGCCGCCCCCTCCCACCACCTCCTCCTCCTCCTCGGGCGCCGGCGCGGGCGCCTCCTTCCAGGTGCACCACGCGTCCCACCCGTACCCCTGCGCCGCCTTCGCGTTCCCGCCCTCCTGGTCCGCCGCGCCCGGCTGGGCCGCCGCGGGGCGCGCGGCGTTCGGGGACGCGGAGGTGGACCCGTCCCTCTTCCCGTCGCTCCGCAGCGTCGGGAGCGGCGTCCCCGCGCGCGCCAACGCCGCGTTCCTCGCCTCCTTCGGCGCCCTCCTCGACGGCTCGCCGCTCCAGTCCGAGGTATCTAGAGCTGTGGCAGAAGAGAAGCGTATTGTATTCACAGGCCATTCATCAGGGGGTTCAATAGCTACCCTTGCTGCCATATGGTTTCTTGAGACCTGCACCAGGAGAGGCAGTGTTAATCAGGCACACCCATTTTGTGTAACCTTTGGGGCTCCTCTTGTTGGAGACAATACCTTTAACAATGCTGTTCGAAGGGAGGGCTGGTCACAGTGTATTTTGAATTTTGTCGTGCCAGTAG ACATCATCCCCCGCATACCACTTACTCCGCTTGCATCTGCCACAGAAGGAATTCAAGCTGTTCTGGATTGGTTATCCCCTCAAACTCCGAACTTCTCGCCTTCTGGGATGCCACTCATCATAAGTCAGTTTTATGAAAATTTACTGAGAAGCACACTTTCTATTGCGAGCTATGAGGCCTGTTCCTTCATGGGATGCACTAGCTCGATCTTAGGAACATTGACTTCCTTCATTGAGCTCTCCCCTTACAGACCCTGTGGGACTTATCTTTTCTTGACAAGCAGTGAACAGCTGGCCGTTCTGACAAATTCAGATGCTGTATTGCAGTTGCTATTTTACTGCCTTCAGTTGGATCCCCAGCAACAATTGCGTGATGCTGCTGAGAGAAGTTTAAGTGCTCATTGGCAATATGAACCAATTAAGCAAAGCATGATGCAAGAGATAGTTTGCGTGGATTACTTGGG AGTGGTTTCATCAACACTTCCTGGTAGGCAGATGAGTAGCACAATAGTTGGAGGCCTTGAACTGAGCAAGGAAGCTATGTTGAGCCTTTCTGCAGCTGGACAATGGGAGAAGCAAAGGGAGACAAACCAGGCAAAAATAGATGGTGCAAGCTGCACCAAAATTAGGGAAGCCCTCAAGTCTCTGAACGAGTACAAAAGGACATGTGAACTCCATGAAGTGAGCTACTATGATTCCTTCAAGCTTCAGCGTGAAGTACATGACTTTAATGCAAATGTTAGCAGGTTGGAACTAGCTGGACTCTGGGATGAGATAGTTGAAATGCTGCGAAGGCGTGAGCTGCCAGATGGTTTCGAAAGCCGACAAGATTGGGTGAATCTAGGAACCTTGTACCGCCGGTTGGTTGAGCCCTTAGACATTGCAAACTACTATAGGCATTCCAAGAACGAGGACACTGGCTCCTACCTCTCCAAGGGAAGGCCAAGACGTTACAAG TACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGCAAAACATTCGAGGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACACAATACAATCAGTTC                                  ]
[+] EMBL CF311123             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTGTCGTGCCAGTAGAACATCATCCCCCGCATACCACTTACTCCGCTTGCATCTGCCACAGAAGGAATTCAAGCTGTTCTGGATTGGTTATCCCCTCAAACTCCGAACTTCTCGCCTTCTGGGATGCCACTCATCATAAGTCAGTTTTATGAAAATTTACTGAGAAGCACACTTTCTATTGCGAGCTATGAGGCCTGTTCCTTCATGGGATGCACTAGCTCGATCTTAGGAACATTGACTTCCTTCATTGAGCTCTCCCCTTACAGACCCTGTGGGACTTATCTTTTCTTGACAAGCAGTGAACAGCTGGCCGTTCTGACAAATTCAGATGCTGTATTGCAGTTGCTATTTTACTGCCTTCAGTTGGATCCCCAGCAACAATTGCGTGATGCTGCTGAGAGAAGTTTAAGTGCTCATTGGCAATATGAACCAATTAAGCAAAGCATGATGCAAGAGATAGTTTGCGTGGA TACTTGGGAAGTGGTTTCATCAACACTTCCTGGTAGGCAGATGAGTAGCACAATAGTTGGAGGCCTTGAACTGAGCAAGGAAGCTATGTTGAGCCTTTCTGCAGCTGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF311124             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AACTACTATAGGCATTCCAAGAACGAGGACACTGGCTCCTACCTCTCCAAGGGAAGGCCAAGACGTTACAAG TACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGCAAAACATTCGAGGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGTGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACACAATACAATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCAAAAAA  ]
[+] EMBL BM038547             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGCCAAGACGTTACAAGTTACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGC AAACATTCGACGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCAC ATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCC CTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACAC ATAC ATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCAAAA    ]
[+] EMBL AU066063             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGTTAAGNTTGAGAGTGATNTTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCNTGAGCCGTTCTTCTTTTGTAATTTGGTGGAAGACGCTCNCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCNTGGTAAGGAAGNTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATAT                                                                           ]
[+] EMBL AU161532             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTACANTANCTTTACATTATATGGATAGAATTATTTNCCTTNACAATGATGANNCANGCATTCGTGGCNTGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACNNAATACAATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCANAAAAAA]


>consensus_9443#0 GGGCTCGAGCCGCAGCCGCCAACGTCCCAAGCGACCGAGCCAAGCGCGTCACCCGCCACA CTGTCACAGACGCGACGCGCTCCCGCTCCCCGACGATGCCGGCGGCGGCGGCGCTGTCCG ACGACGACCGCCTGGTCGTCGCCCACTGCGCCGCGCTCTCCTTCCCACCCGCCTCCCAGC CGCCGCCCCCTCCCACCACCTCCTCCTCCTCCTCGGGCGCCGGCGCGGGCGCCTCCTTCC AGGTGCACCACGCGTCCCACCCGTACCCCTGCGCCGCCTTCGCGTTCCCGCCCTCCTGGT CCGCCGCGCCCGGCTGGGCCGCCGCGGGGCGCGCGGCGTTCGGGGACGCGGAGGTGGACC CGTCCCTCTTCCCGTCGCTCCGCAGCGTCGGGAGCGGCGTCCCCGCGCGCGCCAACGCCG CGTTCCTCGCCTCCTTCGGCGCCCTCCTCGACGGCTCGCCGCTCCAGTCCGAGGTATCTA GAGCTGTGGCAGAAGAGAAGCGTATTGTATTCACAGGCCATTCATCAGGGGGTTCAATAG CTACCCTTGCTGCCATATGGTTTCTTGAGACCTGCACCAGGAGAGGCAGTGTTAATCAGG CACACCCATTTTGTGTAACCTTTGGGGCTCCTCTTGTTGGAGACAATACCTTTAACAATG CTGTTCGAAGGGAGGGCTGGTCACAGTGTATTTTGAATTTTGTCGTGCCAGTAGACATCA TCCCCCGCATACCACTTACTCCGCTTGCATCTGCCACAGAAGGAATTCAAGCTGTTCTGG ATTGGTTATCCCCTCAAACTCCGAACTTCTCGCCTTCTGGGATGCCACTCATCATAAGTC AGTTTTATGAAAATTTACTGAGAAGCACACTTTCTATTGCGAGCTATGAGGCCTGTTCCT TCATGGGATGCACTAGCTCGATCTTAGGAACATTGACTTCCTTCATTGAGCTCTCCCCTT ACAGACCCTGTGGGACTTATCTTTTCTTGACAAGCAGTGAACAGCTGGCCGTTCTGACAA ATTCAGATGCTGTATTGCAGTTGCTATTTTACTGCCTTCAGTTGGATCCCCAGCAACAAT TGCGTGATGCTGCTGAGAGAAGTTTAAGTGCTCATTGGCAATATGAACCAATTAAGCAAA GCATGATGCAAGAGATAGTTTGCGTGGATTACTTGGGAGTGGTTTCATCAACACTTCCTG GTAGGCAGATGAGTAGCACAATAGTTGGAGGCCTTGAACTGAGCAAGGAAGCTATGTTGA GCCTTTCTGCAGCTGGACAATGGGAGAAGCAAAGGGAGACAAACCAGGCAAAAATAGATG GTGCAAGCTGCACCAAAATTAGGGAAGCCCTCAAGTCTCTGAACGAGTACAAAAGGACAT GTGAACTCCATGAAGTGAGCTACTATGATTCCTTCAAGCTTCAGCGTGAAGTACATGACT TTAATGCAAATGTTAGCAGGTTGGAACTAGCTGGACTCTGGGATGAGATAGTTGAAATGC TGCGAAGGCGTGAGCTGCCAGATGGTTTCGAAAGCCGACAAGATTGGGTGAATCTAGGAA CCTTGTACCGCCGGTTGGTTGAGCCCTTAGACATTGCAAACTACTATAGGCATTCCAAGA ACGAGGACACTGGCTCCTACCTCTCCAAGGGAAGGCCAAGACGTTACAAGTACACCCAGG AGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGG CAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGCAAAACATTCGAGGATGTGAGAG ATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGA AGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACC ACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATG GATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTG CCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTA TCCTACACAATACAATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)