These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2156 fasta sequence [GGGCTCGAGCCGCAGCCGCCAACGTCCCAAGCGACCGAGCCAAGCGCGTCACCCGCCACACTGTCACAGACGCGACGCGCTCCCGCTCCCCGACGATGCCGGCGGCGGCGGCGCTGTCCGACGACGACCGCCTGGTCGTCGCCCACTGCGCCGCGCTCTCCTTCCCACCCGCCTCCCAGCCGCCGCCCCCTCCCACCACCTCCTCCTCCTCCTCGGGCGCCGGCGCGGGCGCCTCCTTCCAGGTGCACCACGCGTCCCACCCGTACCCCTGCGCCGCCTTCGCGTTCCCGCCCTCCTGGTCCGCCGCGCCCGGCTGGGCCGCCGCGGGGCGCGCGGCGTTCGGGGACGCGGAGGTGGACCCGTCCCTCTTCCCGTCGCTCCGCAGCGTCGGGAGCGGCGTCCCCGCGCGCGCCAACGCCGCGTTCCTCGCCTCCTTCGGCGCCCTCCTCGACGGCTCGCCGCTCCAGTCCGAGGTATCTAGAGCTGTGGCAGAAGAGAAGCGTATTGTATTCACAGGCCATTCATCAGGGGGTTCAATAGCTACCCTTGCTGCCATATGGTTTCTTGAGACCTGCACCAGGAGAGGCAGTGTTAATCAGGCACACCCATTTTGTGTAACCTTTGGGGCTCCTCTTGTTGGAGACAATACCTTTAACAATGCTGTTCGAAGGGAGGGCTGGTCACAGTGTATTTTGAATTTTGTCGTGCCAGTAG-ACATCATCCCCCGCATACCACTTACTCCGCTTGCATCTGCCACAGAAGGAATTCAAGCTGTTCTGGATTGGTTATCCCCTCAAACTCCGAACTTCTCGCCTTCTGGGATGCCACTCATCATAAGTCAGTTTTATGAAAATTTACTGAGAAGCACACTTTCTATTGCGAGCTATGAGGCCTGTTCCTTCATGGGATGCACTAGCTCGATCTTAGGAACATTGACTTCCTTCATTGAGCTCTCCCCTTACAGACCCTGTGGGACTTATCTTTTCTTGACAAGCAGTGAACAGCTGGCCGTTCTGACAAATTCAGATGCTGTATTGCAGTTGCTATTTTACTGCCTTCAGTTGGATCCCCAGCAACAATTGCGTGATGCTGCTGAGAGAAGTTTAAGTGCTCATTGGCAATATGAACCAATTAAGCAAAGCATGATGCAAGAGATAGTTTGCGTGGATTACTTGGG-AGTGGTTTCATCAACACTTCCTGGTAGGCAGATGAGTAGCACAATAGTTGGAGGCCTTGAACTGAGCAAGGAAGCTATGTTGAGCCTTTCTGCAGCTGGACAATGGGAGAAGCAAAGGGAGACAAACCAGGCAAAAATAGATGGTGCAAGCTGCACCAAAATTAGGGAAGCCCTCAAGTCTCTGAACGAGTACAAAAGGACATGTGAACTCCATGAAGTGAGCTACTATGATTCCTTCAAGCTTCAGCGTGAAGTACATGACTTTAATGCAAATGTTAGCAGGTTGGAACTAGCTGGACTCTGGGATGAGATAGTTGAAATGCTGCGAAGGCGTGAGCTGCCAGATGGTTTCGAAAGCCGACAAGATTGGGTGAATCTAGGAACCTTGTACCGCCGGTTGGTTGAGCCCTTAGACATTGCAAACTACTATAGGCATTCCAAGAACGAGGACACTGGCTCCTACCTCTCCAAGGGAAGGCCAAGACGTTACAAG-TACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGCAAAACATTCGAGGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACACAATACAATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCAAAAAAAA] [+] EMBL AK100117 [GGGCTCGAGCCGCAGCCGCCAACGTCCCAAGCGACCGAGCCAAGCGCGTCACCCGCCACACTGTCACAGACGCGACGCGCTCCCGCTCCCCGACGATGCCGGCGGCGGCGGCGCTGTCCGACGACGACCGCCTGGTCGTCGCCCACTGCGCCGCGCTCTCCTTCCCACCCGCCTCCCAGCCGCCGCCCCCTCCCACCACCTCCTCCTCCTCCTCGGGCGCCGGCGCGGGCGCCTCCTTCCAGGTGCACCACGCGTCCCACCCGTACCCCTGCGCCGCCTTCGCGTTCCCGCCCTCCTGGTCCGCCGCGCCCGGCTGGGCCGCCGCGGGGCGCGCGGCGTTCGGGGACGCGGAGGTGGACCCGTCCCTCTTCCCGTCGCTCCGCAGCGTCGGGAGCGGCGTCCCCGCGCGCGCCAACGCCGCGTTCCTCGCCTCCTTCGGCGCCCTCCTCGACGGCTCGCCGCTCCAGTCCGAGGTATCTAGAGCTGTGGCAGAAGAGAAGCGTATTGTATTCACAGGCCATTCATCAGGGGGTTCAATAGCTACCCTTGCTGCCATATGGTTTCTTGAGACCTGCACCAGGAGAGGCAGTGTTAATCAGGCACACCCATTTTGTGTAACCTTTGGGGCTCCTCTTGTTGGAGACAATACCTTTAACAATGCTGTTCGAAGGGAGGGCTGGTCACAGTGTATTTTGAATTTTGTCGTGCCAGTAG ACATCATCCCCCGCATACCACTTACTCCGCTTGCATCTGCCACAGAAGGAATTCAAGCTGTTCTGGATTGGTTATCCCCTCAAACTCCGAACTTCTCGCCTTCTGGGATGCCACTCATCATAAGTCAGTTTTATGAAAATTTACTGAGAAGCACACTTTCTATTGCGAGCTATGAGGCCTGTTCCTTCATGGGATGCACTAGCTCGATCTTAGGAACATTGACTTCCTTCATTGAGCTCTCCCCTTACAGACCCTGTGGGACTTATCTTTTCTTGACAAGCAGTGAACAGCTGGCCGTTCTGACAAATTCAGATGCTGTATTGCAGTTGCTATTTTACTGCCTTCAGTTGGATCCCCAGCAACAATTGCGTGATGCTGCTGAGAGAAGTTTAAGTGCTCATTGGCAATATGAACCAATTAAGCAAAGCATGATGCAAGAGATAGTTTGCGTGGATTACTTGGG AGTGGTTTCATCAACACTTCCTGGTAGGCAGATGAGTAGCACAATAGTTGGAGGCCTTGAACTGAGCAAGGAAGCTATGTTGAGCCTTTCTGCAGCTGGACAATGGGAGAAGCAAAGGGAGACAAACCAGGCAAAAATAGATGGTGCAAGCTGCACCAAAATTAGGGAAGCCCTCAAGTCTCTGAACGAGTACAAAAGGACATGTGAACTCCATGAAGTGAGCTACTATGATTCCTTCAAGCTTCAGCGTGAAGTACATGACTTTAATGCAAATGTTAGCAGGTTGGAACTAGCTGGACTCTGGGATGAGATAGTTGAAATGCTGCGAAGGCGTGAGCTGCCAGATGGTTTCGAAAGCCGACAAGATTGGGTGAATCTAGGAACCTTGTACCGCCGGTTGGTTGAGCCCTTAGACATTGCAAACTACTATAGGCATTCCAAGAACGAGGACACTGGCTCCTACCTCTCCAAGGGAAGGCCAAGACGTTACAAG TACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGCAAAACATTCGAGGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACACAATACAATCAGTTC ] [+] EMBL CF311123 [ TTTGTCGTGCCAGTAGAACATCATCCCCCGCATACCACTTACTCCGCTTGCATCTGCCACAGAAGGAATTCAAGCTGTTCTGGATTGGTTATCCCCTCAAACTCCGAACTTCTCGCCTTCTGGGATGCCACTCATCATAAGTCAGTTTTATGAAAATTTACTGAGAAGCACACTTTCTATTGCGAGCTATGAGGCCTGTTCCTTCATGGGATGCACTAGCTCGATCTTAGGAACATTGACTTCCTTCATTGAGCTCTCCCCTTACAGACCCTGTGGGACTTATCTTTTCTTGACAAGCAGTGAACAGCTGGCCGTTCTGACAAATTCAGATGCTGTATTGCAGTTGCTATTTTACTGCCTTCAGTTGGATCCCCAGCAACAATTGCGTGATGCTGCTGAGAGAAGTTTAAGTGCTCATTGGCAATATGAACCAATTAAGCAAAGCATGATGCAAGAGATAGTTTGCGTGGA TACTTGGGAAGTGGTTTCATCAACACTTCCTGGTAGGCAGATGAGTAGCACAATAGTTGGAGGCCTTGAACTGAGCAAGGAAGCTATGTTGAGCCTTTCTGCAGCTGGAC ] [-] EMBL CF311124 [ AACTACTATAGGCATTCCAAGAACGAGGACACTGGCTCCTACCTCTCCAAGGGAAGGCCAAGACGTTACAAG TACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGCAAAACATTCGAGGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGTGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACACAATACAATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCAAAAAA ] [+] EMBL BM038547 [ GGCCAAGACGTTACAAGTTACACCCAGGAGTGGCACGAGCAGTCGCAGCGCATCTCCTTCGGTTCTAGCCTTGAGTCTTGCTTCTGGGCAATGGCTGAGGAACTCCAGGCTGAGATTGCTAACGGC AAACATTCGACGATGTGAGAGATAGAGTAGTTAAGCTTGAGAGTGATGCTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCCTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTAAGGAAGCTTTACATTATATGGATAGAATTATTTGCCTTCAC ATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCC CTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACAC ATAC ATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCAAAA ] [+] EMBL AU066063 [ AGTTAAGNTTGAGAGTGATNTTCACGGATGGTCCATGTCTGGAAGTTTAGGGAAGGATATATTCNTGAGCCGTTCTTCTTTTGTAATTTGGTGGAAGACGCTCNCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCNTGGTAAGGAAGNTTTACATTATATGGATAGAATTATTTGCCTTCACAATGATGAGGCAGGCATTCGTGGCATGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATAT ] [+] EMBL AU161532 [ CTGAGCCGTTCTTCTTTTGTGATTTGGTGGAAGACGCTCCCGGAGAACCACAGATCTGCATCATGCATCGCGAAACTTGTGCCCTGGTACANTANCTTTACATTATATGGATAGAATTATTTNCCTTNACAATGATGANNCANGCATTCGTGGCNTGTTGCAACTACTGCCACTGTAACTGTATACCATATGCATGAACTTTGTAAATATGCTACTTCGCGTTTTTGTATCCTACNNAATACAATCAGTTCAAGTTGAACCATTTGTTTCTTGCATCANAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||