cluster # 9446

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Oryza sativa
cluster # 9446 cluster # 9446 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9446#0 length = 1040 sequences # 4

consensus_9446#1 length = 338 sequences # 2

consensusID : consensus_9446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1040
fasta sequence

                              [CCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGCGAATCTGACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAAGGACAGTGCCATCAGAGTATCGCAGCAGGAGAAAGAGCGGAGGAGAAGGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTCCCTACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTCATCTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAAATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAATGCCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACATTTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCGTTGACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCGGAGGTTTGCATCCAAAAAAAAA]

[+] EMBL AK064492             [CCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGCGAATCTGACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAAGGACAGTGCCATCAGAGTATCGCAGCAGGAGAAAGAGCGGAGGAGAAGGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTCCCTACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTCATCTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAAATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAATGCCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACA TTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAA                                                                                                   ]
[-] EMBL CA762656             [                                                                                                                                                                                                                                                                             AAGGAGCCTCTGGAGGTAGAAGATAAAGCCATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTCCCTACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTCATCTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAAATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAATGCCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTA GTATGTGCTTCGGAAGACATTTATGTTTTAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAAAAAAaa                                                                                                       ]
[+] EMBL AU174366             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACATTTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCGTTGACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCGGAGGTTTGCATCCAAAAAAAAA]
[+] EMBL AU223272             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACATTTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCGTTGACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCGGAGGTTTGCATCCAAAAAAAAA]




>consensus_9446#0
CCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCT
CCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGCGAATCTGACAGCG
CCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTG
AGAAGGACAGTGCCATCAGAGTATCGCAGCAGGAGAAAGAGCGGAGGAGAAGGTGGGCCC
AACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACA
TCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTG
GCATGCTCCCTACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTCAT
CTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAAAT
CTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAATG
CCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGA
ACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGT
AATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACATTT
ATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCC
CAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATG
TAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGG
AATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCGTT
GACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCGGA
GGTTTGCATCCAAAAAAAAA

consensusID : consensus_9446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 338
fasta sequence

                              [TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGNANATCTNACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAA-GGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACATCAAA-CAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTNCCTTACCAATGTTATC]

[+] EMBL AU066213             [TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGNANATCTNACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAA GGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACATCAAA CAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTNCCTTACCAATGTTATC]
[+] EMBL AU066207             [TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGGAAATCTGACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAANGGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCTNTTGGAGGTAGAAGGTTAAGACATCAAANCAGA                                                                           ]




>consensus_9446#1
TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGC
TCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGNANATCTNACAGC
GCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTT
GAGAAGGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGT
AGAAGATAAAGACATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGAC
CCATACTATGCCTGGCATGCTNCCTTACCAATGTTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9446#0      -CCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGC 59
consensus_9446#1      TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGC 60
                       ***********************************************************

consensus_9446#0      TCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGCGAATCTGACAGC 119
consensus_9446#1      TCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGNANATCTNACAGC 120
                      ***********************************************   **** *****

consensus_9446#0      GCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTT 179
consensus_9446#1      GCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTT 180
                      ************************************************************

consensus_9446#0      GAGAAGGACAGTGCCATCAGAGTATCGCAGCAGGAGAAAGAGCGGAGGAGAAGGTGGGCC 239
consensus_9446#1      GAGAAGG-----------------------------------------------TGGGCC 193
                      *******                                               ******

consensus_9446#0      CAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGAC 299
consensus_9446#1      CAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGAC 253
                      ************************************************************

consensus_9446#0      ATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCT 359
consensus_9446#1      ATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCT 313
                      ************************************************************

consensus_9446#0      GGCATGCTCCCT-ACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTC 418
consensus_9446#1      GGCATGCTNCCTTACCAATGTTATC----------------------------------- 338
                      ******** *** ************                                   

consensus_9446#0      ATCTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAA 478
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      ATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAA 538
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      TGCCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAA 598
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      GAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATG 658
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      GTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACAT 718
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      TTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACAT 778
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      CCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAA 838
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      TGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATAT 898
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      GGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCG 958
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      TTGACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCG 1018
consensus_9446#1      ------------------------------------------------------------
                                                                                  

consensus_9446#0      GAGGTTTGCATCCAAAAAAAAA 1040
consensus_9446#1      ----------------------