These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1040 fasta sequence [CCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGCGAATCTGACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAAGGACAGTGCCATCAGAGTATCGCAGCAGGAGAAAGAGCGGAGGAGAAGGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTCCCTACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTCATCTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAAATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAATGCCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACATTTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCGTTGACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCGGAGGTTTGCATCCAAAAAAAAA] [+] EMBL AK064492 [CCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGCGAATCTGACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAAGGACAGTGCCATCAGAGTATCGCAGCAGGAGAAAGAGCGGAGGAGAAGGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTCCCTACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTCATCTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAAATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAATGCCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACA TTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAA ] [-] EMBL CA762656 [ AAGGAGCCTCTGGAGGTAGAAGATAAAGCCATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTCCCTACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTCATCTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAAATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAATGCCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTA GTATGTGCTTCGGAAGACATTTATGTTTTAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAAAAAAaa ] [+] EMBL AU174366 [ TTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACATTTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCGTTGACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCGGAGGTTTGCATCCAAAAAAAAA] [+] EMBL AU223272 [ CAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACATTTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCGTTGACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCGGAGGTTTGCATCCAAAAAAAAA] consensusID : consensus_9446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 338 fasta sequence [TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGNANATCTNACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAA-GGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACATCAAA-CAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTNCCTTACCAATGTTATC] [+] EMBL AU066213 [TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGNANATCTNACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAA GGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGACATCAAA CAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCTGGCATGCTNCCTTACCAATGTTATC] [+] EMBL AU066207 [TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGCTCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGGAAATCTGACAGCGCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTTGAGAANGGTGGGCCCAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCTNTTGGAGGTAGAAGGTTAAGACATCAAANCAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9446#0 -CCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGC 59 consensus_9446#1 TCCCCACCTGCATCCCCTCTCCTCCACGGCGGCGGCGGACACCACCGCACAATGAGGAGC 60 *********************************************************** consensus_9446#0 TCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGCGAATCTGACAGC 119 consensus_9446#1 TCCCCTGCGGCGAGTGGCACCACGCCGTCGAACATGGACAGCGGGAGNANATCTNACAGC 120 *********************************************** **** ***** consensus_9446#0 GCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTT 179 consensus_9446#1 GCCCCCGAGGAGCTCACCGCCGTCCAGGGGGTTGAGAAGCACGACGAGATCAGTAAAGTT 180 ************************************************************ consensus_9446#0 GAGAAGGACAGTGCCATCAGAGTATCGCAGCAGGAGAAAGAGCGGAGGAGAAGGTGGGCC 239 consensus_9446#1 GAGAAGG-----------------------------------------------TGGGCC 193 ******* ****** consensus_9446#0 CAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGAC 299 consensus_9446#1 CAACGAAGAACATCCTCAAAACCAGATAAAAAGGAGCCTCTGGAGGTAGAAGATAAAGAC 253 ************************************************************ consensus_9446#0 ATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCT 359 consensus_9446#1 ATCAAACAGAAGGCAGAGAATGAAGAAGATGAGGAGAGCGAGGAGACCCATACTATGCCT 313 ************************************************************ consensus_9446#0 GGCATGCTCCCT-ACCAATGTTATCGAAATGCTTGCAGCACGTGAGAAGCAAACCTTCTC 418 consensus_9446#1 GGCATGCTNCCTTACCAATGTTATC----------------------------------- 338 ******** *** ************ consensus_9446#0 ATCTGACTCCGAGGAAGAGATAACAAATCAGAAGGTTCAGAAAAGGAAGAAGCGGTTGAA 478 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 ATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAA 538 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 TGCCCTTGCTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAA 598 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 GAACGCGAACAAAGCTTTGCGCCTCCTTTCATCGAAGGGCAATTTTTTGAGTTGAATATG 658 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 GTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGCTTCGGAAGACAT 718 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 TTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACAT 778 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 CCCAGGCGCACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAA 838 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 TGTAATATGTATGGTGCGTCAGTATTTGACAATTCTTTGGGCATGAGTAATTTCTTATAT 898 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 GGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTTCAGTTAAACCCG 958 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 TTGACATGAATTATTTGGAAACTTAGCAACCAATCAAATGAGGATGGCATGGACATNCCG 1018 consensus_9446#1 ------------------------------------------------------------ consensus_9446#0 GAGGTTTGCATCCAAAAAAAAA 1040 consensus_9446#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||