These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 759 fasta sequence [ACTTTCAAATTCCTTTAGAACCTTCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAA--TC-TTACA-CTAATGG-CTATTTT-CA-CATGGC-TTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACTTAGTCTCTGCATCGTTCCAAGAAAGGTGAAAATTCAGATTTTGCAAGTTCGGAAAACATTTTACCAGGTCACTGATAGCATGCCGATCATTCAAACTATATAACCTGATGTTTGCATTTTCCAGCTTCAACGAATGCTTGAGG] [+] EMBL CB618049 [ACTTTCAAATTCCTTTAGAACCTTCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAA TC TTACA CTAATGG CTATTTT CA CATGGC TTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACTTAGTCTCTGCATCGTTCCAAGAAAGGTGAAAATTCAGATTTTGCAAGTTCGGAAAACATTTTACCAGGTCACTGATAGCATGCCGATCATTCAAACTATATAACCTGATGTTTGCATTTTCCAGCTTCAACGAATGCTTGAGG] [-] EMBL AU075599 [ ttTTTAGAAAAATCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAA TC TTACA CTAATGG CTATTTT CA CATGGC TTGCATAGAGCGCTA CTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACT ] [+] EMBL CB637523 [ AATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAA TC TTACA CTAATGG CTATTTT CA CATGGC TTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTTTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACTTAGTCTCTGCATCGTTCCAAGAAAGGTGAAAATTCAGAT ] [-] EMBL AU066237 [ tattTATTTTTAAATTAAANCCTTTACACCTAATGGCCTATTTTCCACCATGGCTTTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGT ] [-] EMBL AU066268 [ TGN CTATTTN CA CATGGC TTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAANTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTAT ] consensusID : consensus_9447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [AGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAAATCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCACATGGCTTGCATAGAGCGCTAGCTCTATCTGGATACTAGTAGTCTTAATACTTTCTA] [-] EMBL CF317535 [AGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAAATCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCACATGGCTTGCATAGAGCGCTAGCTCTATCTGGATACTAGTAGTCTTAATACTTTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9447#0 ------------------------------------------------------------ consensus_9447#1 AGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_9447#0 -------------------------ACTTTCAAATTCCTTTAGAACCTTCAAATAAACTC 35 consensus_9447#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAAATCAAATAAACTC 120 *** ** ******* ************ consensus_9447#0 AATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCA 95 consensus_9447#1 AATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCA 180 ************************************************************ consensus_9447#0 CATGGCTTGCATAGAGCGCTAGCTCTATCTGGA-ACTAGTAGTCTTAATACAAAGCTGTG 154 consensus_9447#1 CATGGCTTGCATAGAGCGCTAGCTCTATCTGGATACTAGTAGTCTTAATACTTT-CTA-- 237 ********************************* ***************** ** consensus_9447#0 TCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCAC 214 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 TCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTA 274 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 TTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAA 334 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 GAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTAT 394 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 TGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTA 454 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 TTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAA 514 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 AAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGT 574 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 ACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACTTAGTCTCTGCATCGTTCC 634 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 AAGAAAGGTGAAAATTCAGATTTTGCAAGTTCGGAAAACATTTTACCAGGTCACTGATAG 694 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 CATGCCGATCATTCAAACTATATAACCTGATGTTTGCATTTTCCAGCTTCAACGAATGCT 754 consensus_9447#1 ------------------------------------------------------------ consensus_9447#0 TGAGG 759 consensus_9447#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||