|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1225 fasta sequence
[TTTTTTTTTTGGAGTAACTTTTAGTGTATATTTAAATTAGAAGAAATTACACTTGAATTTAATTACAAACTGATTAATTACAATATGATGCAATCACACATACATACATTAACTGAGCACAAACATACGTATATATATATACGCATGCCGTACACACATACTTATGCACACAGTGTCACATATATATCTCACACAGTACATGAATATATACAGAGTACAGTACATGAAACAAACCGACACTGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACACATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCAATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGGTACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAAGTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAATTTAGTCGCTGCTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGG-CTCGAACGCCGGGCGGAAGAACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGNCGNCGCCGTAGCCGTCGCCGCCGTCGTACGGCCCATGCGGCCCCCCGTACACGTGGACCTCGCGAGTGTTGATGTACAGCGGCGACCTCGCGCCGTTCTGGGGAGTCCAGTACCCGGCCGGCACGCCGCCGCCGCCGNCGTACGGCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCACCGCCGTAGTACGGAGTACCGACGCCGGCGCCGTAGAGGGTGACGCTGCCGGCGTTGTAGCCGCCGTTGTAACCGTAACCACCACCACCACCGTAGTTAGCGCCGGCGTTGGCCTTGGTGCTGCCGCCGTAGCCGCCGCCGGATGCTGCGTAGCCGACGACGGCGGCGGTGGCGGCGTCGTCGTTCCTGCCGCTGGTCTTCTTCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTTTAATTTGTGGAGGAGATGACACTTAATT]
[-] EMBL AU068098 [TTTTTTTTTTGGAGTAACTTTTAGTGTATATTTAAATTAGAAGAAATTACACTTGAATTTAATTACAAACTGATTAATTACAATATGATGCAATCACACATACATACATTAACTGAGCACAAACATACGTATATATATATACGCATGCCGTACACACATACTTATGCACACAGTGTCACATATATATCTCACACAGTACATGAATATATACAGAGTACAGTACATGAAACAAACCGACACTGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACACATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCAATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGGTACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAAGTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAATTTAGTCGCTGCTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGG CTCGAACGCCGGGCGGAAGAACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGNCGNCGCCGTAGC ]
[+] EMBL CB645166 [ tcttttaTTTTGCACACAGTGTCACATATATATCTCACACAGCCCATGAATATATACAGAGTACAGTACATGAAACAAACCGACACTGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACACATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCAATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGGTACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAAGTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAA TTAGTCGCTGCTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGGCCTCGAACGCCGGGCGGAAGAACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGCCGCCGCCGTAGCCGTCGCCGCCGTCGTACGGCCCATGCGGCCCCCCGTACACGTGGACCTCGCGAGTGTTGATGTACAGCGGCGACCTCGCGCCGTTCTGGGGAGTCCAGTACCCGGCCGGCACGCCGCCGCCGCCGNCGTACGGCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCA ]
[-] EMBL AK109173 [ GTGGACCTCGCGAGTGTTGATGTACAGCGGCGACCTCGCGCCGTTCTGGGGAGTCCAGTACCCGGCCGGCACGCCGCCGCCGCCGCCGTACGGCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCACCGCCGTAGTACGGAGTACCGACGCCGGCGCCGTAGAGGGTGACGCTGCCGGCGTTGTAGCCGCCGTTGTAACCGTAACCACCACCACCACCGTAGTTAGCGCCGGCGTTGGCCTTGGTGCTGCCGCCGTAGCCGCCGCCGGATGCTGCGTAGCCGACGACGGCGGCGGTGGCGGCGTCGTCGTTCCTGCCGCTGGTCTTCTTCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTTTAATTTGTGGAGGAGATGACACTTAATT]
[-] EMBL CA754802 [ CTGCCGCTGGTCTTCTTCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATNGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTT ]
consensusID : consensus_9451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 655 fasta sequence
[GGTCTTCTTCAGCGCGACCGACGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTATCCAGCGGTCGATCGAACAAATTAAGCTCATCAAATTGCACGTACATGTCAAGAATATTCAGAGATTCGATCGTTGCGTTGTTTTATATATAGTATATATATTTGGTGGCTGCAGCTAATACATGTAATTAGTATGTGATATATTGCATTCAGCTGACGGTATACATGAACGGATTTGCAAACGAATTAAAGAACCAATTATCATATACTCCTATAACGGATACTTCAGATATATTCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTTAATGAACTGTGTCTGACGAATTTGATTATGTCGATCTGGTTAGCTAGTGGTTGATGGATGAACTGTGCCTGATATGGTAGTTGTTCAAGCTTGCATGGATGAACATAATCCGCTAGAACAGTAAAAAGTGAAAAAGAAACATAAAACAAAGTAAAAGGAGGATCATAGATAAGATACCTTTAATTTGTGGAGGAGATG]
[-] EMBL CB662022 [GGTCTTCTTCAGCGCGACCGACGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTATCCAGCGGTCGATCGAACAAATTAAGCTCATCAAATTGCACGTACATGTCAAGAATATTCAGAGATTCGATCGTTGCGTTGTTTTATATATAGTATATATATTTGGTGGCTGCAGCTAATACATGTAATTAGTATGTGATATATTGCATTCAGCTGACGGTATACATGAACGGATTTGCAAACGAATTAAAGAACCAATTATCATATACTCCTATAACGGATACTTCAGATATATTCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTTAATGAACTGTGTCTGACGAATTTGATTATGTCGATCTGGTTAGCTAGTGGTTGATGGATGAACTGTGCCTGATATGGTAGTTGTTCAAGCT ]
[-] EMBL CB645165 [ GGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTATCCAGCGGTCGATCGAACAAATTAAGCTAATAAAATTGCACGTACATGTCAAGAATATTCAGAGATTCGATCGTTGCGTTGTTTTATATATAGTATATATATTTGGTGGCTGCAGCTAATACATGTAATTAGTATGTGATATATTGCATTCAGCTGACGGTATACATGAACGGATTTGCAAACGAATTAAAGAACCAATTATCATATACTCCTATAACGGATACTTCAGATATATTCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTTAATGAACTGTGTCTGACGAATTTGATTATGTCGATCTGGTTAGCTAGTGGTTGATGGATGAACTGTGCCTGATATGGTAGTTCTTCAAGCTTGCATGGATGAACATAATCCGCTAGAACAGTAAAAAGTGAAAAAGAAACATAAAACAAAGTAAAAGGAGGATCATAGATAAGATACCTTTAATTTGTGGAGGAGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9451#0 TTTTTTTTTTGGAGTAACTTTTAGTGTATATTTAAATTAGAAGAAATTACACTTGAATTT 60
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 AATTACAAACTGATTAATTACAATATGATGCAATCACACATACATACATTAACTGAGCAC 120
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 AAACATACGTATATATATATACGCATGCCGTACACACATACTTATGCACACAGTGTCACA 180
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 TATATATCTCACACAGTACATGAATATATACAGAGTACAGTACATGAAACAAACCGACAC 240
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 TGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACAC 300
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 ATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCA 360
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 ATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGG 420
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 TACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAA 480
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 GTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAATTTAGTCGCTG 540
consensus_9451#1 ------------------------------------------------------------
consensus_9451#0 CTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGGCT-CGAACGCCGGGCGGAAG 599
consensus_9451#1 ------------GGTCTTCT-TCAGCGCGACCGACGGCGGCGGCTGGCGCTTCGCCGACG 47
***** ** * * * ** **** * *** ** ** *
consensus_9451#0 AACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGNCGNCGCCGTAGCCGTCGCCGCCG 659
consensus_9451#1 T-CTTGTCGCCG-GCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCC 105
* * *** * ** ** * * * ** * * ** * ** * **** *
consensus_9451#0 TCGTACGGCCCATGCGGCCCCCCGTACACGTGGACCTCGCGAGTGTTGATGTACAGCGGC 719
consensus_9451#1 TCCT--GATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGAT--C 161
** * * ** * * * * * * * * ** ** * ** * *
consensus_9451#0 GACCTCGCGCCGTTCTGGGGA---GTCCAGTACCCGGCCGG-CACGCCGCCGCCGCCGNC 775
consensus_9451#1 TACCGC-TGCTGTTCCACATACCTATCCAGCGGTCGATCGAACAAATTAAGCTCATCAAA 220
*** * ** **** * ***** ** ** ** * *
consensus_9451#0 GTACG-GCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCACCGCCGTA-GTACGGA 833
consensus_9451#1 TTGCACGTACATGTCAAGAATATTCAGAGATTCGATCGTTGC-GTTGTTTTATATATAGT 279
* * * ** ** * * * ** ** ** * ** ** *
consensus_9451#0 GTACCGACGCCGGCGCCGTAGAGGGTG-ACGCTGCCGGCGTTGTAGCCGCCGTTGTAACC 892
consensus_9451#1 ATATATATTTGGTGGCTGCAGCTAATACATGTAATTAGTATGTGATATATTGCATTCAGC 339
** * * ** * ** * * * * * * * * * *
consensus_9451#0 GTAACCACCACCACCACCGTAGTTAGCGCCGGCGTTGGCCTTGGTGCTGCCGCCGTAGCC 952
consensus_9451#1 -TGACGGTATACATGAACGGA-TTTGCAAACGAATTAAAGAACCAATTATCATATACTCC 397
* ** ** * ** * ** ** * ** * * **
consensus_9451#0 GCCGCCGGATGCTGCGTAGCCGACGACGGCGGCGGTGGCGGCGTCGTCGTTCCTGCCGCT 1012
consensus_9451#1 TATAACGGATACTTCAGATATATTCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTT 457
***** ** * * * * * * * * * *
consensus_9451#0 GGTCTTCTTCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGC 1072
consensus_9451#1 AATGAACTGT--GTCTGACGAATTTGATTATGTCGATCTGGTTAGCTAGTGGTTGATGGA 515
* ** * **** * * * * * ** * **
consensus_9451#0 GGCGGC-CGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGG 1131
consensus_9451#1 TGAACTGTGCCTGATATGGTAGTTGTTCAAGCT--TGCATGGATGAACATAATCCGCTAG 573
* ** * *** * * ** * *** *** * * * ***** *
consensus_9451#0 TGTCAGTGGAGGAATTGGAGTAGCTGC-TGCCGCTGAAGGATCTACCGCTGCTGTTCCAC 1190
consensus_9451#1 AA-CAGT--AAAAAGTGAAAAAGAAACATAAAACAAAGTAAAAGGAGGATCATAGATAAG 630
**** * ** ** * ** * * * * * * * * *
consensus_9451#0 ATACCTTTAATTTGTGGAGGAGATGACACTTAATT 1225
consensus_9451#1 ATACCTTTAATTTGTGGAGGAGATG---------- 655
*************************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||