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Oryza sativa
cluster # 9453 cluster # 9453       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9453#0 length = 2188 sequences # 4  
consensus_9453#1 length = 453 sequences # 1  
consensus_9453#2 length = 328 sequences # 1  

consensusID : consensus_9453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2188
fasta sequence
                              [GTTGTCATTCAGTTATTCACATAAGGATGTCTGGGATAATATCAGCTCATCCAATGTTCCATCCTCTGGAACAACTCATACCATGCCAAAGCCAAGTACTTTGACATTTAAAACCACTGTCATTCCAAAAACTAATACCAGTACACTCCCAGATTTGTCGCCTTTGATGACGGGCTCAAAATTCTCTCTGAGTCCATTGACCGTGAAAACTTTATCTGGGGATTCTGGAGGTGCGTCATCCATTATTACAAAGAACAAACAAGGTGGACAGGCAATGCCATATTTGGGAACCACAAAAGGACTGGATGTTTCTCCACAGAATATGGGTGGTGCATTTAGAGATCTTAACAAACCGTCTTTGTCTCCTGAACCTCCCAAGTC-TGCTCTGTTACAAGGGAAGACTGTGCAACTTGGTAAGATTACTGAAACAGTGCAGAGCCCAGTGAAAGCTAAACCTGAGGTGGCATTCCAACCTCCTGCATTTCCACCAACACCTGTTGCACAATCTTCTCCATGCTCTATTAAGCCAACTGTTCCCTCTTCAGCTACATCATCCTCGTCAACTATGCAAGAATCAGCTGCAAAAACATCAGATGTTTTGTCTCCAACAGGTCCTTCCATTCTTCCATCAAAGGAATCAATGACAAAACCTTCATCACCATTACCTGATGGTACCATATCTAGTTCCCTACTATCTATTCCAATGCCTGTTAAGGAGTCATCAACTGGCTTGAATAAAATTGTATCTAAGCCTGAAGTGGTTACATCAGAGGTAACTGGAACAACCGTTTCTGCAAGTACTAGCTCAAGCGTACCAATCACTGAAGGCAAACCTTCATCGATTCCAGCAACCA-GTGGAAGCTTACCTTCAATTCCTGTCTCTGCACCTAAAGTGGTGCCAGTGTCTGCAGAATCTGTTGTTGTCACTTCCACCGGAAAAGATGTAGGACCGAGCAATCCCTCATCAGATGAAGATGATATGGAAGAGGAAGTTCCTTCTGCAAGTTCGGATCTCAACTTGGGAGCCCTTGGTGGGTTTGGTCTTGGGTCTGTGCCTTCTTCAAGTCCCCCAAAATCCAATCCCTTTGGGAACTCATTTACTACCTCTGACAATAAGAGTTCAGGTTCGTCATTTACCCTGACAACCAGTCCAGGACAGCTTTTCCGTCCGGCGTCACTGAGTATTCCCTCATCTCAGCCAGCACAGTCATCTCAATCAACTAGCTCAAGTACATTTTCTAGTGCATTCTCAAGTGGGCTTAGTGGATTCGGACAGTCTGCACAGATTGGATCAGCGCAGCAGTCAGGGTTTGGGCAGCCTTCACAAATTGGAGCTGGGCAGCAGGCAGGATTTGGTCAGCCAGCACAAATTCAGTCAGGATTTGGCCAACCAGCACAAGTTGGAGTTGCGCAACAGTCAGGATTTGGGCAGCCTGCACAAATTGGGACAGCACAGCAGTCAGGATTTGGGCAGCCTGCACAATTTGGTGCTCAGCAAGCACTTGGATCTGTCCTGGGTTCTTTTGGACAATCACGCCAATTGGGAAGTTTCGGTGCTGGGGGATTTGGTGGATTTGCTAGTGCCTCTGCTTCCGGGGGCTTTTCTAGCAATTCTGGATTTGCTGGTGGTGCAACAGGCGGTGGCTTTTCTGCAGCTGCTGCTCCTGCTGGCGGAGGATTTGCTGCTGCTGCTACTGGTGGAGGGTTTGCTGCTCTTGCCTCCAAAGGTGGGGGTTTTGCGGCTGCGGCTTCATCTGGTGGCGGCTTTGGAGGTGCAGCCCAGGGAAGTGGCTTCAGCAGTGGTGGATTTGGAGCTTTTGGTGGTAATCAAGGGTCTGGCTTCTCGGCATTTGCTGGGAGTGGCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAAATAACAGAGTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGCTGCAGTGGCCCTTATGCATGCACCAAAAATTGTTCTTCGTGCATTAGCTGTAGCTATTGTGGAACTCCCAGCACCTGGTAAGTTCAACCTCGATATTTGTACATCGAACACAGTGGCTAATATGGAACTGACTGACGAACATTTTTGGACCCCCTATTTCTTTCAACAA-GAGATAGATGAGCAGTGCGCATGCATGATCAGAATTTTAAGTTAATACAAATATTCTAT]

[+] EMBL AK107323             [GTTGTCATTCAGTTATTCACATAAGGATGTCTGGGATAATATCAGCTCATCCAATGTTCCATCCTCTGGAACAACTCATACCATGCCAAAGCCAAGTACTTTGACATTTAAAACCACTGTCATTCCAAAAACTAATACCAGTACACTCCCAGATTTGTCGCCTTTGATGACGGGCTCAAAATTCTCTCTGAGTCCATTGACCGTGAAAACTTTATCTGGGGATTCTGGAGGTGCGTCATCCATTATTACAAAGAACAAACAAGGTGGACAGGCAATGCCATATTTGGGAACCACAAAAGGACTGGATGTTTCTCCACAGAATATGGGTGGTGCATTTAGAGATCTTAACAAACCGTCTTTGTCTCCTGAACCTCCCAAGTC TGCTCTGTTACAAGGGAAGACTGTGCAACTTGGTAAGATTACTGAAACAGTGCAGAGCCCAGTGAAAGCTAAACCTGAGGTGGCATTCCAACCTCCTGCATTTCCACCAACACCTGTTGCACAATCTTCTCCATGCTCTATTAAGCCAACTGTTCCCTCTTCAGCTACATCATCCTCGTCAACTATGCAAGAATCAGCTGCAAAAACATCAGATGTTTTGTCTCCAACAGGTCCTTCCATTCTTCCATCAAAGGAATCAATGACAAAACCTTCATCACCATTACCTGATGGTACCATATCTAGTTCCCTACTATCTATTCCAATGCCTGTTAAGGAGTCATCAACTGGCTTGAATAAAATTGTATCTAAGCCTGAAGTGGTTACATCAGAGGTAACTGGAACAACCGTTTCTGCAAGTACTAGCTCAAGCGTACCAATCACTGAAGGCAAACCTTCATCGATTCCAGCAACCA GTGGAAGCTTACCTTCAATTCCTGTCTCTGCACCTAAAGTGGTGCCAGTGTCTGCAGAATCTGTTGTTGTCACTTCCACCGGAAAAGATGTAGGACCGAGCAATCCCTCATCAGATGAAGATGATATGGAAGAGGAAGTTCCTTCTGCAAGTTCGGATCTCAACTTGGGAGCCCTTGGTGGGTTTGGTCTTGGGTCTGTGCCTTCTTCAAGTCCCCCAAAATCCAATCCCTTTGGGAACTCATTTACTACCTCTGACAATAAGAGTTCAGGTTCGTCATTTACCCTGACAACCAGTCCAGGACAGCTTTTCCGTCCGGCGTCACTGAGTATTCCCTCATCTCAGCCAGCACAGTCATCTCAATCAACTAGCTCAAGTACATTTTCTAGTGCATTCTCAAGTGGGCTTAGTGGATTCGGACAGTCTGCACAGATTGGATCAGCGCAGCAGTCAGGGTTTGGGCAGCCTTCACAAATTGGAGCTGGGCAGCAGGCAGGATTTGGTCAGCCAGCACAAATTCAGTCAGGATTTGGCCAACCAGCACAAGTTGGAGTTGCGCAACAGTCAGGATTTGGGCAGCCTGCACAAATTGGGACAGCACAGCAGTCAGGATTTGGGCAGCCTGCACAATTTGGTGCTCAGCAAGCACTTGGATCTGTCCTGGGTTCTTTTGGACAATCACGCCAATTGGGAAGTTTCGGTGCTGGGGGATTTGGTGGATTTGCTAGTGCCTCTGCTTCCGGGGGCTTTTCTAGCAATTCTGGATTTGCTGGTGGTGCAACAGGCGGTGGCTTTTCTGCAGCTGCTGCTCCTGCTGGCGGAGGATTTGCTGCTGCTGCTACTGGTGGAGGGTTTGCTGCTCTTGCCTCCAAAGGTGGGGGTTTTGCGGCTGCGGCTTCATCTGGTGGCGGCTTTGGAGGTGCAGCCCAGGGAAGTGGCTTCAGCAGTGGTGGATTTGGAGCTTTTGGTGGTAATCAAGGGTCTGGCTTCTCGGCATTTGCTGGGAGTGGCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAAATAACAGAGTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGCTGCAGTGGCCCTTATGCATGCACCAAAAATTGTTCTTCGTGCATTAGCTGTAGCTATTGTGGAACTCCCAGCACCTGGTAAGTTCAACCTCGATATTTGTACATCGAACACAGTGGCTAATATGGAACTGACTGACGAACATTTTTGGACCCCCTATTTCTTTCAACAA GAGATAGATGAGCAGTGCGCATGCATGATCAGA                          ]
[+] EMBL AU082606             [          AGTTATTCACATAAGGATGTCTGGGATAATATCAGCTCATCCAATGTTCCATCCTCTGGAACAACTCATACCATGCCAAAGTCAAGTACTTTGACATTTAAAACCACTGTCATTCCAAAAACTAATACCAGTACACTCCCAGATTTGTCGCCTTTGATGACGGGCTCAAAATTCTCTCTGAGGNCATTGACCGTGAAAACTTTATCTGGGGATTCTGGAGGTGCGTCATCCATTATTACAAAGAACAAACAAGGTGGACAGGCAATGCCATATTTGGGGACCACAAAAGGACTGGATGTTTCTCCACAGAATATGGGTGGTGCATTTAGGGNTCTTAACAAACCGTCTTTGTNTCCTGAACCTNCCAAGTCTTGCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB664618             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AACAACCGTTTCTGCAAGAACTAGCTCAAGCGTACCAATCACTGAAGGCAAACCTTCATCGATTCCAGCAACCAGGTGGAAGCTTACCTTCAATTCCTGTCTCTGCACCTAAAGTGGTGCCAGTGTCTGCAGAATCTGTTGTTGTCACTTCCACCGGAAAAGATGTACGACCGAGCAATCCCTCATCACATGAAGATGATATGGAAGAGGAAGTTCCTTCTGCAAGTTCAGATCTCAACTTGGGAGCCCTTGGAGGGTTTGGTCTTGGGTCTGTGCCTTCTTCAAGTCCCCCAAAATCCAATCCCTTAGGGAACTCATTTACTACCTCTGACAATAAGAGTTCAGGTTCGTCATTTACCCTGACAACCAGTCCAGGACAGCTTTTCCGTCCGGCGGCACTGAGTATTCCCTCATCTCAGCCAGAACAGTCATCTCAATCAACTAGCTCAAGTACATTTTCTAGTGCATTCTCAAGTGGGCTTATTGGATTCAGACAGTCTGCACAGATTGGATCAGCGCAGCACTCAGGGTTTGGGCAGCCTTCACAAATTGGAGCTGGGCAGCAGGCAGGATTTGGTCAGCCAGCACAAATTCAGTCAGGATTTGGCCAACCAGCACAAGTTGGAGTTGCGCAACAGTCAGGATTTGGGCAGCCTGCACAAATTGGGACAGCACAGCAGTCAGGATTTGGGCAGCCTGCACAATTTGGTGCTCAGCAAGCACTTGGATCTGTCCTGCGTTCTTTTGGACAATCACGCCAATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB664619             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATTTGGGCAGCCTGCACAAATTGGGACAGCACAGCAGTCAGGATTTGGGCAGCCTGCACAATTTGGTGCTCAGCAAGCACTTGGATCTGTCCTGGGTTCTTTTGGACAATCACGCCAATTGGGAAGTTTCGGTGCTGGGGGATTTGGTGGATTCGTTAGTGCCTCTGCTTCCGGGGGCTTTTTTAGCAATTTTGGATTTGCTGGTGGTGCAACAGGCGGTGGCTTTTCTGCAGCTGCTGCTCCTGCTGGCGGAGGATTTGCTGCTGCTGTTACTGGTGGAGGGTTTGGTGCTCTTGCCTCCAAAGGTGGGGGTTTTGCGCCTGCGGCTTCATCTGGTGGCGGCTTTGGAGGTGCAGCCCAGGGAAGTGGTTTCAGCAGTGGTGGATTTGGAGCTTTTGGTGGTAATCAAGGGTGTGGCTTCTCGGCATTTGCTGGGAGTGGCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAAATAACAGAGTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGATGCAGTGGCCCTTATGCATGCACCAAAAATTGTTTTTGGTGCATTAGCGGTAGGTATTGTGGAACTCCCAGCACCTGGTAAGTTCAACCTCGATATTTGTACATAGAACACAGTGGGTAATATGGAACTGACTGAAGAACATTTTTGGACCCCCTATTTCTTTCAACAACGAGATAGATGAGCAGTGCGCATGCATGATCAGAATTTTAAGTTAATACAAATATTCTAT]


>consensus_9453#0 GTTGTCATTCAGTTATTCACATAAGGATGTCTGGGATAATATCAGCTCATCCAATGTTCC ATCCTCTGGAACAACTCATACCATGCCAAAGCCAAGTACTTTGACATTTAAAACCACTGT CATTCCAAAAACTAATACCAGTACACTCCCAGATTTGTCGCCTTTGATGACGGGCTCAAA ATTCTCTCTGAGTCCATTGACCGTGAAAACTTTATCTGGGGATTCTGGAGGTGCGTCATC CATTATTACAAAGAACAAACAAGGTGGACAGGCAATGCCATATTTGGGAACCACAAAAGG ACTGGATGTTTCTCCACAGAATATGGGTGGTGCATTTAGAGATCTTAACAAACCGTCTTT GTCTCCTGAACCTCCCAAGTCTGCTCTGTTACAAGGGAAGACTGTGCAACTTGGTAAGAT TACTGAAACAGTGCAGAGCCCAGTGAAAGCTAAACCTGAGGTGGCATTCCAACCTCCTGC ATTTCCACCAACACCTGTTGCACAATCTTCTCCATGCTCTATTAAGCCAACTGTTCCCTC TTCAGCTACATCATCCTCGTCAACTATGCAAGAATCAGCTGCAAAAACATCAGATGTTTT GTCTCCAACAGGTCCTTCCATTCTTCCATCAAAGGAATCAATGACAAAACCTTCATCACC ATTACCTGATGGTACCATATCTAGTTCCCTACTATCTATTCCAATGCCTGTTAAGGAGTC ATCAACTGGCTTGAATAAAATTGTATCTAAGCCTGAAGTGGTTACATCAGAGGTAACTGG AACAACCGTTTCTGCAAGTACTAGCTCAAGCGTACCAATCACTGAAGGCAAACCTTCATC GATTCCAGCAACCAGTGGAAGCTTACCTTCAATTCCTGTCTCTGCACCTAAAGTGGTGCC AGTGTCTGCAGAATCTGTTGTTGTCACTTCCACCGGAAAAGATGTAGGACCGAGCAATCC CTCATCAGATGAAGATGATATGGAAGAGGAAGTTCCTTCTGCAAGTTCGGATCTCAACTT GGGAGCCCTTGGTGGGTTTGGTCTTGGGTCTGTGCCTTCTTCAAGTCCCCCAAAATCCAA TCCCTTTGGGAACTCATTTACTACCTCTGACAATAAGAGTTCAGGTTCGTCATTTACCCT GACAACCAGTCCAGGACAGCTTTTCCGTCCGGCGTCACTGAGTATTCCCTCATCTCAGCC AGCACAGTCATCTCAATCAACTAGCTCAAGTACATTTTCTAGTGCATTCTCAAGTGGGCT TAGTGGATTCGGACAGTCTGCACAGATTGGATCAGCGCAGCAGTCAGGGTTTGGGCAGCC TTCACAAATTGGAGCTGGGCAGCAGGCAGGATTTGGTCAGCCAGCACAAATTCAGTCAGG ATTTGGCCAACCAGCACAAGTTGGAGTTGCGCAACAGTCAGGATTTGGGCAGCCTGCACA AATTGGGACAGCACAGCAGTCAGGATTTGGGCAGCCTGCACAATTTGGTGCTCAGCAAGC ACTTGGATCTGTCCTGGGTTCTTTTGGACAATCACGCCAATTGGGAAGTTTCGGTGCTGG GGGATTTGGTGGATTTGCTAGTGCCTCTGCTTCCGGGGGCTTTTCTAGCAATTCTGGATT TGCTGGTGGTGCAACAGGCGGTGGCTTTTCTGCAGCTGCTGCTCCTGCTGGCGGAGGATT TGCTGCTGCTGCTACTGGTGGAGGGTTTGCTGCTCTTGCCTCCAAAGGTGGGGGTTTTGC GGCTGCGGCTTCATCTGGTGGCGGCTTTGGAGGTGCAGCCCAGGGAAGTGGCTTCAGCAG TGGTGGATTTGGAGCTTTTGGTGGTAATCAAGGGTCTGGCTTCTCGGCATTTGCTGGGAG TGGCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAAATAACA GAGTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGCTGCAGTGGCCCTTATGCATG CACCAAAAATTGTTCTTCGTGCATTAGCTGTAGCTATTGTGGAACTCCCAGCACCTGGTA AGTTCAACCTCGATATTTGTACATCGAACACAGTGGCTAATATGGAACTGACTGACGAAC ATTTTTGGACCCCCTATTTCTTTCAACAAGAGATAGATGAGCAGTGCGCATGCATGATCA GAATTTTAAGTTAATACAAATATTCTAT



consensusID : consensus_9453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence
                              [CNTCANCTGGTGCCGGCTTTTGGAGGTGCAACCCCAGGNAAAGTGCCTTCANCAGTGGTGNATTTGGAACCTTTTGGTGGTAATCCAAGGGTCTGCCTTCTCGGCATTTGCTGGGAAGTGGCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAAATAACAGAGTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGCTGCAGTGGCCCTTATGCATGCACCAAAAATTGTTCTTCGTGCATTAGCTGTAGCTATTGTGGAACTCCCAGCACCTGGTAAGTTCAACCTCGATATTTGTACATCGAACACAGTGGCTAATATGGAACTGACTGACGAACATTTTTGGACCCCCTATTTCTTTCAACAAGAGATAGATGAGCAGTGCGCATGCATGATCAGAATTCNAAGNNNANNNNNATACACGGTAAAAAAA]

[+] EMBL AU068417             [CNTCANCTGGTGCCGGCTTTTGGAGGTGCAACCCCAGGNAAAGTGCCTTCANCAGTGGTGNATTTGGAACCTTTTGGTGGTAATCCAAGGGTCTGCCTTCTCGGCATTTGCTGGGAAGTGGCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAAATAACAGAGTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGCTGCAGTGGCCCTTATGCATGCACCAAAAATTGTTCTTCGTGCATTAGCTGTAGCTATTGTGGAACTCCCAGCACCTGGTAAGTTCAACCTCGATATTTGTACATCGAACACAGTGGCTAATATGGAACTGACTGACGAACATTTTTGGACCCCCTATTTCTTTCAACAAGAGATAGATGAGCAGTGCGCATGCATGATCAGAATTCNAAGNNNANNNNNATACACGGTAAAAAAA]


>consensus_9453#1 CNTCANCTGGTGCCGGCTTTTGGAGGTGCAACCCCAGGNAAAGTGCCTTCANCAGTGGTG NATTTGGAACCTTTTGGTGGTAATCCAAGGGTCTGCCTTCTCGGCATTTGCTGGGAAGTG GCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAAATAACAGA GTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGCTGCAGTGGCCCTTATGCATGCA CCAAAAATTGTTCTTCGTGCATTAGCTGTAGCTATTGTGGAACTCCCAGCACCTGGTAAG TTCAACCTCGATATTTGTACATCGAACACAGTGGCTAATATGGAACTGACTGACGAACAT TTTTGGACCCCCTATTTCTTTCAACAAGAGATAGATGAGCAGTGCGCATGCATGATCAGA ATTCNAAGNNNANNNNNATACACGGTAAAAAAA



consensusID : consensus_9453#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [AAGTCTGACCAGCCACCAAAGTTGGGCTCATCTTCACCGTTGTCATTCAGTTATTCACATTAAGGATGTCTGGGATAATATTCAGCTCATCCAATGTTCCATCCTCCTGGAACAACTCATACCCTCGCCAAAAGTCAAGTTACTTTCGACATCCTCCACACCCACTAGTCCATCTCCCAAACCCTCAATTACCCACTTAACCCTCCCCCCACCATCCTCGGTCCCACCCTATCCCGAATCGAACACGCGGGCCTCCCCCACACCTATCCCTCACTCCCCTTCGACACGTTCCCCCACTTCCCNGGCCACCNCCAGGTCTTGGCAACAN]

[+] EMBL CA753661             [AAGTCTGACCAGCCACCAAAGTTGGGCTCATCTTCACCGTTGTCATTCAGTTATTCACATTAAGGATGTCTGGGATAATATTCAGCTCATCCAATGTTCCATCCTCCTGGAACAACTCATACCCTCGCCAAAAGTCAAGTTACTTTCGACATCCTCCACACCCACTAGTCCATCTCCCAAACCCTCAATTACCCACTTAACCCTCCCCCCACCATCCTCGGTCCCACCCTATCCCGAATCGAACACGCGGGCCTCCCCCACACCTATCCCTCACTCCCCTTCGACACGTTCCCCCACTTCCCNGGCCACCNCCAGGTCTTGGCAACAN]


>consensus_9453#2 AAGTCTGACCAGCCACCAAAGTTGGGCTCATCTTCACCGTTGTCATTCAGTTATTCACAT TAAGGATGTCTGGGATAATATTCAGCTCATCCAATGTTCCATCCTCCTGGAACAACTCAT ACCCTCGCCAAAAGTCAAGTTACTTTCGACATCCTCCACACCCACTAGTCCATCTCCCAA ACCCTCAATTACCCACTTAACCCTCCCCCCACCATCCTCGGTCCCACCCTATCCCGAATC GAACACGCGGGCCTCCCCCACACCTATCCCTCACTCCCCTTCGACACGTTCCCCCACTTC CCNGGCCACCNCCAGGTCTTGGCAACAN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9453#0      GTTGTCATTCAGTTATTCACATAAGGATGTCTGGGATAATATCAGCTCATCCAATGTTCC 60
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      ATCCTCTGGAACAACTCATACCATGCCAAAGCCAAGTACTTTGACATTTAAAACCACTGT 120
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      CATTCCAAAAACTAATACCAGTACACTCCCAGATTTGTCGCCTTTGATGACGGGCTCAAA 180
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      ATTCTCTCTGAGTCCATTGACCGTGAAAACTTTATCTGGGGATTCTGGAGGTGCGTCATC 240
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      CATTATTACAAAGAACAAACAAGGTGGACAGGCAATGCCATATTTGGGAACCACAAAAGG 300
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      ACTGGATGTTTCTCCACAGAATATGGGTGGTGCATTTAGAGATCTTAACAAACCGTCTTT 360
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      GTCTCCTGAACCTCCCAAGTCTGCTCTGTTACAAGGGAAGACTGTGCAACTTGGTAAGAT 420
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      TACTGAAACAGTGCAGAGCCCAGTGAAAGCTAAACCTGAGGTGGCATTCCAACCTCCTGC 480
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      ATTTCCACCAACACCTGTTGCACAATCTTCTCCATGCTCTATTAAGCCAACTGTTCCCTC 540
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      TTCAGCTACATCATCCTCGTCAACTATGCAAGAATCAGCTGCAAAAACATCAGATGTTTT 600
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      GTCTCCAACAGGTCCTTCCATTCTTCCATCAAAGGAATCAATGACAAAACCTTCATCACC 660
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      ATTACCTGATGGTACCATATCTAGTTCCCTACTATCTATTCCAATGCCTGTTAAGGAGTC 720
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      ATCAACTGGCTTGAATAAAATTGTATCTAAGCCTGAAGTGGTTACATCAGAGGTAACTGG 780
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      AACAACCGTTTCTGCAAGTACTAGCTCAAGCGTACCAATCACTGAAGGCAAACCTTCATC 840
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      GATTCCAGCAACCAGTGGAAGCTTACCTTCAATTCCTGTCTCTGCACCTAAAGTGGTGCC 900
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      AGTGTCTGCAGAATCTGTTGTTGTCACTTCCACCGGAAAAGATGTAGGACCGAGCAATCC 960
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      CTCATCAGATGAAGATGATATGGAAGAGGAAGTTCCTTCTGCAAGTTCGGATCTCAACTT 1020
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      GGGAGCCCTTGGTGGGTTTGGTCTTGGGTCTGTGCCTTCTTCAAGTCCCCCAAAATCCAA 1080
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      TCCCTTTGGGAACTCATTTACTACCTCTGACAATAAGAGTTCAGGTTCGTCATTTACCCT 1140
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      GACAACCAGTCCAGGACAGCTTTTCCGTCCGGCGTCACTGAGTATTCCCTCATCTCAGCC 1200
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      AGCACAGTCATCTCAATCAACTAGCTCAAGTACATTTTCTAGTGCATTCTCAAGTGGGCT 1260
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      TAGTGGATTCGGACAGTCTGCACAGATTGGATCAGCGCAGCAGTCAGGGTTTGGGCAGCC 1320
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      TTCACAAATTGGAGCTGGGCAGCAGGCAGGATTTGGTCAGCCAGCACAAATTCAGTCAGG 1380
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      ATTTGGCCAACCAGCACAAGTTGGAGTTGCGCAACAGTCAGGATTTGGGCAGCCTGCACA 1440
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      AATTGGGACAGCACAGCAGTCAGGATTTGGGCAGCCTGCACAATTTGGTGCTCAGCAAGC 1500
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      ACTTGGATCTGTCCTGGGTTCTTTTGGACAATCACGCCAATTGGGAAGTTTCGGTGCTGG 1560
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      GGGATTTGGTGGATTTGCTAGTGCCTCTGCTTCCGGGGGCTTTTCTAGCAATTCTGGATT 1620
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      TGCTGGTGGTGCAACAGGCGGTGGCTTTTCTGCAGCTGCTGCTCCTGCTGGCGGAGGATT 1680
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      TGCTGCTGCTGCTACTGGTGGAGGGTTTGCTGCTCTTGCCTCCAAAGGTGGGGGTTTTGC 1740
consensus_9453#1      ------------------------------------------------------------
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      GGCTGCGGCTTCATCTGGTGGCGGCTTT-GGAGGTGCAGCCC--AGGGAAGTGGCTTCAG 1797
consensus_9453#1      --------CNTCANCTGGTGCCGGCTTTTGGAGGTGCAACCCCAGGNAAAGTGCCTTCAN 52
consensus_9453#2      ------------------------------------------------------------
                                                                                  

consensus_9453#0      CAGTGGTGGATTTGGAGC-TTTTGGTGGTAATC-AAGGGTCTGGCTTCTCGGCATTTGCT 1855
consensus_9453#1      CAGTGGTGNATTTGGAACCTTTTGGTGGTAATCCAAGGGTCTGCCTTCTCGGCATTTGCT 112
consensus_9453#2      -------------------------------------------AAGTCTGACCAGCCACC 17
                                                                    ***   **    * 

consensus_9453#0      GGGA-GTGGCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAA 1914
consensus_9453#1      GGGAAGTGGCTCTGCTGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAA 172
consensus_9453#2      AAAGTTGGGCTC------ATCTTCACCGTTGTCATTCAGTTATT-----CACATTAAGGA 66
                             *****      ****  *       **   * *  **     ** ** *   *

consensus_9453#0      ATAACAGAGTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGCTGCAGTGGCCCTTA 1974
consensus_9453#1      ATAACAGAGTTGTTTCCAGGTATCCTAGTTCTTCATTCCTTTCGGCTGCAGTGGCCCTTA 232
consensus_9453#2      TGTCTGGGATAATATTCAGCTCATCCAATGTTCCATCCTC-----CTGGAACAA--CTCA 119
                            *  *  * * *** *   * * *  * *** *       *** *      ** *

consensus_9453#0      TGCATGCACCAAAAATTG---TTCTTCGTGCATTAGCTGTAGCTATT-GTGGAACTCCCA 2030
consensus_9453#1      TGCATGCACCAAAAATTG---TTCTTCGTGCATTAGCTGTAGCTATT-GTGGAACTCCCA 288
consensus_9453#2      TACCCTCGCCAAAAGTCAAGTTACTTTCGACATCCTCCACACCCACTAGTCCATCTCCCA 179
                      * *   * ****** *     * ***    ***   *   * * * * **  * ******

consensus_9453#0      GCACCTGGTAAGTTCAACCTCGATATTTGTACATCGAACACAGTGGCTAATATGGAACTG 2090
consensus_9453#1      GCACCTGGTAAGTTCAACCTCGATATTTGTACATCGAACACAGTGGCTAATATGGAACTG 348
consensus_9453#2      A-ACCCTCAATTACCCACTTAACCCTCCCCCCACCATCCTCGGT--CCCACCCTATCCCG 236
                        ***    *    * ** *     *     ** *   * * **  *  *       * *

consensus_9453#0      ACTGACGAACATTTTTGGACCCCCTATTTCTTTCAACAAGAGATAGATGAGCAGTGCGCA 2150
consensus_9453#1      ACTGACGAACATTTTTGGACCCCCTATTTCTTTCAACAAGAGATAGATGAGCAGTGCGCA 408
consensus_9453#2      AAT--CGAACACGCGGGCCTCCCCCACACCTATCCCTCACTCCCCTTCGACACGTTCCCC 294
                      * *  ******     *   **** *   ** **    *         **   ** * * 

consensus_9453#0      TGCATGATCAGA-ATTTTAAGTTAATACAAATATTCTAT------- 2188
consensus_9453#1      TGCATGATCAGA-ATTCNAAGNNNANNNNNATACACGGTAAAAAAA 453
consensus_9453#2      CACTTCCCNGGCCACCNCCAGGTCTTGGCAACAN------------ 328
                        * *     *  *     **         * *             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)