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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 875 fasta sequence
[CGCGGAACCACGCCTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCGCGACGTCCTAGCTTCCCGGACCGCCTCCGCGTGGTTGGATCCGGCGAGAGGGGAGAACTGTTGTGTTCCTTGGAAGCGGGAGCTGGATGAAAGCTGGGAGGAAGAACCTACGGCGGGCGTGCAGCGAGGGCGCCGTCACGCTGGGGGAGGGCGAGAGCATCATGCAGGTCCTCGCGCTGCGCGGCTCCAACGTCATCGAGGTGATGGACGCCAAGGGAGTGAAGTCTCTGGCCTTGTTCCCGGCCAAGTTCCAGAAGAGCTTTTGGATCAAGAATGGGAATTTTGTGGTTGTGGATGCTAGTGGCCGGGATCAGGCGCTCGAATCAGGGAGCAAGATAGCCTGTGTTGTGTCCCAAGTCCTCTTCCATGACCAAGTCCGGGCTATGGAGAAATCTGAGGAATGGCCAGCTATCTTCAAGTCAACTTCTAAGGAAGGTTCAGAAGCTGGAACACAAGAAGGAACAAGGCCACAGATTGAGGAGGAACCGGATTCTGATGAAGATGATGATCTGCCACCGCTTGAGGCGAACACGAATAGACAAAGACCATTTGAACTGTATGCCGACTCAGAGAGTGATTCTGACTCTTAGACTAGTTTACATTTGAACACGCCATTGATGATGTTGTGGTTTGTGATGGAAAAATACACCCGGTGTACTTATGGTCAAGTCTTACATTCTGCCAAAAACTGCTGAGTGTCAAAATATTCTGAAGAAGTTCGATGTCA-TTCAGTAGCAGGCACAAGGCCTTTCAC-TTGAAACTATGATCAACTCCATATGTTGCTTTTTATTGTTCTCAATGATGGTGCATTAAGTGTCTGGACACAGCC]
[+] EMBL CF293818 [CGCGGAACCACGCCTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCGCGACGTCCTAGCTTCCCGGACCGCCTCCGCGTGGTTGGATCCGGCGAGAGGGGAGAACTGTTGTGTTCCTTGGAAGCGGGAGCTGGATGAAAGCTGGGAGGAAGAACCTACGGCGGGCGTGCAGCGAGGGCGCCGTCACGCTGGGGGAGGGCGAGAGCATCATGCAGGTCCTCGCGCTGCGCGGCTCCAACGTCATCGAGGTGATGGACGCCAAGGGAGTGAAGTCTCTGGCCTTGTTCCCGGCCAAGTTCCAGAAGAGCTTTTGGATCAAGAATGGGAATTTTGTGGTTGTGGGTGCTAGTGGCCGG ]
[+] EMBL AK107914 [ GCGGAACCACGCCTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCGCGACGTCCTAGCTTCCCGGACCGCCTCCGCGTGGTTGGATCCGGCGAGAGGGGAGAACTGTTGTGTTCCTTGGAAGCGGGAGCTGGATGAAAGCTGGGAGGAAGAACCTACGGCGGGCGTGCAGCGAGGGCGCCGTCACGCTGGGGGAGGGCGAGAGCATCATGCAGGTCCTCGCGCTGCGCGGCTCCAACGTCATCGAGGTGATGGACGCCAAGGGAGTGAAGTCTCTGGCCTTGTTCCCGGCCAAGTTCCAGAAGAGCTTTTGGATCAAGAATGGGAATTTTGTGGTTGTGGATGCTAGTGGCCGGGATCAGGCGCTCGAATCAGGGAGCAAGATAGCCTGTGTTGTGTCCCAAGTCCTCTTCCATGACCAAGTCCGGGCTATGGAGAAATCTGAGGAATGGCCAGCTATCTTCAAGTCAACTTCTAAGGAAGGTTCAGAAGCTGGAACACAAGAAGGAACAAGGCCACAGATTGAGGAGGAACCGGATTCTGATGAAGATGATGATCTGCCACCGCTTGAGGCGAACACGAATAGACAAAGACCATTTGAACTGTATGCCGACTCAGAGAGTGATTCTGACTCTTAGACTAGTTTACATTTGAACACGCCATTGATGATGTTGTGGTTTGTGATGGAAAAATACACCCGGTGTACTTATGGTCAAGTCTTACATTCTGCCAAAAACTGCTGAGTGTCAAAATATTCTGAAGAAGTTCGATGTCA TTCAGTAGCAGGCACAAGGCCTTTCAC TTGAAACTATGATCAACTCCATATGTTGCTTTTTATTGTTCTCAATGATGGTGC ]
[+] EMBL AU070227 [ CGCCGCCGCCGCCGCCGCCGCCGCCGCGCGACGTCCTAGCTTCCCGGACCGCCTCCGCGTGGTTGGATCCGGCGAGAGGGGAGAACTGTTGTGTTCCTTGGAAGCGGGAGCTGGATGAAAGCTGGGAGGAAGAACCTACGGCGGGCGTNCAGCGAGGGCGCCGTCACGCTGGGGGAGGGCGAGAGCATCATGCAGGTCCTCGCGCTGCGCGGCTCCAACGTCATCGAGGTGATGGACGCCAAGGGAGTNAAGTCTCTGGCCTTGTTCCCGGCCAAGTTCCAGAAGAGCTTTTGGATCAAGAATGGGAATTTTGTGGTT ]
[+] EMBL CA763978 [ TCTGGCCTTGTTCCCGGCCAAGTTCCAGAAGAGCTTTTGGATCAAGAATGGGAATTTTGTGGTTGTGGATGCTAGTGGCCGGGATCAGGCGCTCGAATCAGGGAGCAAGATAGCCTGTGTTGTGTCCCAAGTCCTCTTCCATGACCAAGTCCGGGCTATGGAGAAATCTGAGGAATGGCCAGCTATCTTCAAGTCAACTTCTAAGGAAGGTTCAGAAGCTGGAACACAAGAAGGAACAAGGCCACAGATTGAGGAGGAACCGGATTCTGATGAAGATGATGATCTGCCACCGCTTGAGGCGAACACGAATAGACAAAGACCATTTGAACTGTATGCCGACTCAGAGAGTGATTCTGACTCTTAGACTAGTTTACATTTGAACACGCCATTGATGATGTTGTGGTTTGTGATGGAAAAATACACCCGGTGTACTTATGGTCAAGTCTTACATTCTGCCAAAAACTGCTGAGTGTCAAAATATTCTGAAGAAGTTCGATGTCATTTCAGTAGCAGGCACAAGGCCTTTCACTTTGAAACTATGATCAACTNCATATGNTGCTTTTTATTGGTCTCAATGATGGCGCATTAAGTGTCTGGACACAGCC]
[-] EMBL CF293819 [ CAGAAGCTGGAACACAAGAAGGAACAAGGCCACAGATTGAGGAGGAACCGGATTCTGATGAAGATGATGATCTGCCACCGCTTGAGGCGAACACGAATAGACAAAGACCATTTGAACTGTATGCCGACTCAGAGAGTGATTCTGACTCTTAGACTAGTTTACATTTGAACACGCCATTGATGATGTTGTGGTTTGTGATGGAAAAATACACCCGGTGTACTTATGGTCAAGTCTTACATTCTGCCAAAAACTGCTGAGTGTCAAAATATTTTGAAGAAGTTCGATGTCA TTCAGTAGCAGGCACAAGGCCTTTCAC TTGAAAaaa ]
consensusID : consensus_9472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[TTTGTGGTTGTGGATGCTAGTGGCCGGGATCAGGCGCTCGAATCAGGGAGCAAGATAGCCTGTGTTGTGTCCCAAGTCCTNTTCCATGACCAAGTCCGGGCTATGGAGAAATTTGAGGAATGGCCAGCTATNTTCAAGTCAACTTTTAAGGAAGGTTCAGAAGCTGGAACNCAAGAAGGAACAAGGCCCCAGATTGAGGAGGAACCGGATTNTGATGAANATGATGATNTGCCCCCGCTTGAGGCGAACNCGAATAGACAAAGACCNTTTGAACTGTATGCCGACTCANAGAGTGATTNTGACTNTTAGACTAGTTTACATTTGAACNCGCCATTGATGATGTTGTGGTTTGTGATGGAAAAATACACCCGGNGTACTTATGGTCAAGTNTTACATTNTGCCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU173814 [TTTGTGGTTGTGGATGCTAGTGGCCGGGATCAGGCGCTCGAATCAGGGAGCAAGATAGCCTGTGTTGTGTCCCAAGTCCTNTTCCATGACCAAGTCCGGGCTATGGAGAAATTTGAGGAATGGCCAGCTATNTTCAAGTCAACTTTTAAGGAAGGTTCAGAAGCTGGAACNCAAGAAGGAACAAGGCCCCAGATTGAGGAGGAACCGGATTNTGATGAANATGATGATNTGCCCCCGCTTGAGGCGAACNCGAATAGACAAAGACCNTTTGAACTGTATGCCGACTCANAGAGTGATTNTGACTNTTAGACTAGTTTACATTTGAACNCGCCATTGATGATGTTGTGGTTTGTGATGGAAAAATACACCCGGNGTACTTATGGTCAAGTNTTACATTNTGCCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9472#0 CGCGGAACCACGCCTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCGCGACGTCCTAGCTT 60
consensus_9472#1 ------------------------------------------------------------
consensus_9472#0 CCCGGACCGCCTCCGCGTGGTTGGATCCGGCGAGAGGGGAGAACTGTTGTGTTCCTTGGA 120
consensus_9472#1 ------------------------------------------------------------
consensus_9472#0 AGCGGGAGCTGGATGAAAGCTGGGAGGAAGAACCTACGGCGGGCGTGCAGCGAGGGCGCC 180
consensus_9472#1 ------------------------------------------------------------
consensus_9472#0 GTCACGCTGGGGGAGGGCGAGAGCATCATGCAGGTCCTCGCGCTGCGCGGCTCCAACGTC 240
consensus_9472#1 ------------------------------------------------------------
consensus_9472#0 ATCGAGGTGATGGACGCCAAGGGAGTGAAGTCTCTGGCCTTGTTCCCGGCCAAGTTCCAG 300
consensus_9472#1 ------------------------------------------------------------
consensus_9472#0 AAGAGCTTTTGGATCAAGAATGGGAATTTTGTGGTTGTGGATGCTAGTGGCCGGGATCAG 360
consensus_9472#1 ---------------------------TTTGTGGTTGTGGATGCTAGTGGCCGGGATCAG 33
*********************************
consensus_9472#0 GCGCTCGAATCAGGGAGCAAGATAGCCTGTGTTGTGTCCCAAGTCCTCTTCCATGACCAA 420
consensus_9472#1 GCGCTCGAATCAGGGAGCAAGATAGCCTGTGTTGTGTCCCAAGTCCTNTTCCATGACCAA 93
*********************************************** ************
consensus_9472#0 GTCCGGGCTATGGAGAAATCTGAGGAATGGCCAGCTATCTTCAAGTCAACTTCTAAGGAA 480
consensus_9472#1 GTCCGGGCTATGGAGAAATTTGAGGAATGGCCAGCTATNTTCAAGTCAACTTTTAAGGAA 153
******************* ****************** ************* *******
consensus_9472#0 GGTTCAGAAGCTGGAACACAAGAAGGAACAAGGCCACAGATTGAGGAGGAACCGGATTCT 540
consensus_9472#1 GGTTCAGAAGCTGGAACNCAAGAAGGAACAAGGCCCCAGATTGAGGAGGAACCGGATTNT 213
***************** ***************** ********************** *
consensus_9472#0 GATGAAGATGATGATCTGCCACCGCTTGAGGCGAACACGAATAGACAAAGACCATTTGAA 600
consensus_9472#1 GATGAANATGATGATNTGCCCCCGCTTGAGGCGAACNCGAATAGACAAAGACCNTTTGAA 273
****** ******** **** *************** **************** ******
consensus_9472#0 CTGTATGCCGACTCAGAGAGTGATTCTGACTCTTAGACTAGTTTACATTTGAACACGCCA 660
consensus_9472#1 CTGTATGCCGACTCANAGAGTGATTNTGACTNTTAGACTAGTTTACATTTGAACNCGCCA 333
*************** ********* ***** ********************** *****
consensus_9472#0 TTGATGATGTTGTGGTTTGTGATGGAAAAATACACCCGGTGTACTTATGGTCAAGTCTTA 720
consensus_9472#1 TTGATGATGTTGTGGTTTGTGATGGAAAAATACACCCGGNGTACTTATGGTCAAGTNTTA 393
*************************************** **************** ***
consensus_9472#0 CATTCTGCCAAAAACTGCTGAGTGTCAAAATATTCTGAAGAAGTTCGATGTCATTCAGTA 780
consensus_9472#1 CATTNTGCCAAAAAAAAAAAAAAAAAAAAAA----------------------------- 424
**** ********* * ****
consensus_9472#0 GCAGGCACAAGGCCTTTCACTTGAAACTATGATCAACTCCATATGTTGCTTTTTATTGTT 840
consensus_9472#1 ------------------------------------------------------------
consensus_9472#0 CTCAATGATGGTGCATTAAGTGTCTGGACACAGCC 875
consensus_9472#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||