cluster # 9474

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Oryza sativa
cluster # 9474 cluster # 9474 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9474#0 length = 947 sequences # 4

consensus_9474#1 length = 280 sequences # 1
consensus_9474#2 length = 214 sequences # 1

consensusID : consensus_9474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 947
fasta sequence

                              [CGCCGCTGGATCAACACCACCTCAAGCTCGAAGTGAGCCACTGTCCCAAGCAACCTTCCTTCTTCTCCCCACCTCGTTTTCTCCAAATCGCCATTCACAACCCATACACACTCTGTGCGCGTGTGTGTCTCTATGATGTCGGCGTCG-CGGAGTTCTACAAGCCGGCGCCGGTGTTCTCGCCGTGCAGCTCGCCGCTGCGGCTGCTGCAGCAGCAGCA-CGGGGAGGATCATCAGGAGGAGTACGGCTACGGCAGCAGCGGCGGCTGCTGCAG-G-ACGCCGACGGGAGGGGAGAGCAACCTGAAGGCGCCAGGGACGTGCCCGCCGGCGCCGAGGAAGCCGCGCGCGCCCGCCGCGCCGTGCCGGAAGCGGCTGTTCGAGGTCGAGGTGTTAAGCCTCCGCCTCGAGGAGCTCGAGCGCCTCTTCTGGCGCCCTCCGCCGCCGCCGCCGACGACGCAGCCGCAGCCGCAGCCGCAGCAGCCGCCGCAGAAGCGCCGGAGGGTGGCCAAGCTCGGCAGCTAGCTAGCTCGCCGGAGTAGCACACGTGTGCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAGTAGTTCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATATTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATACCTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATACTAGTATCTGTGTATGTGATGGCATTGGGGGTGTGTACTCCTGGTACGTATTAGCAATCAATAGGAGCTTAGCTTGAATTTGCTTCCATGCATATATGGCAGTTGCAGTGCAGCCTGTGAAGTAATGACAAGTTGTATGATCCGTGTATACATCCATCAATGTATCAGTGAAT]

[+] EMBL AU070278             [CGCCGCTGGATCAACACCACCTCAAGCTCGAAGTGAGCCACTGTCCCAAGCAACCTTCCTTCTTCTCCCCACCTCGTTTTCTCCAAATCGCCATTCACAACCCATACACACTCTGTGCGCGTGTGTGTCTCTATGATGTCGGCGTCG CGGAGTTCTACAAGCCGGCGCCGGTGTTCTCGCCGTGCAGCTCGCCGCTGCGGCTGCTGCAGCAGCAGCA CGGGGAGGATCATCAGGAGGAGTACGGCTACGGCAGCAGCGGCGGCTGCTGCAG GTACGCCGACGGGAGGGGAGAGCAACCTGAAGGCGCCAGGGACGTGCCCGCCGGCGCCGAGGAAGCCGCGCGCGCCCGCCGCGCCGTGCCGGAAGCGGCTGTTCGAGGTCGAGGTGTTAAGCCTCCGCCTCGAGGAGCTCGAGCGCCTCTTCTGGCGCCCTCCGCCGCCGCCGCCGACGACGCAGCCGCAGCCGCAGCCGCAGCAGCCGCCGCAGAAGCGCCGGAGGGTGGCCAAGCTCGGCAGCTAGCTAGCTCGCCGGAGTAGCACACGTGTGCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAGTAGTTCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTT                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU197815             [CGCCGCTGGATCAACACCACCTCAAGCTCGAAGTGAGCCACTGTCCCAAGCAACCTTCCTTCTTCTCCCCACCTCGTTTTCTCCAAATCGCCATTCACAACCCATACACACTCTGTGCGCGTGTGTGTCTCTATGATGTCGGCGTCGCCGGAGTTCTACAAGCCGGCGCCGGTGTTCTCGCCGTGCAGCTCGCCGCTGCGGCTGCTGCAGCAGCAGCA CGGGGAGGATCATCAGGAGGAGTACGGCTACGGCAGCAGCGGCGGCTGCTGCAG G ACGCCGACGGGAGGGGAGAGCAACCTGAAGGCGCCAGGGACGTGCCCGCCGGCGCCGAGGAAGCCGCGCGCGCCCGCCGNGCCGTGCCGGAAGCGGCTGTTCGAGGTCGAGGTGTTAAGCCTCCGCCTCGAGGAGCTCGAGCGCCTCTTCTGGCGCCCTCCGCCGCCGCCGNCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK069919             [                                                                                                    CCCATACACACTCTGTGCGCGTGTGTGTCTCTATGATGTCGGCGTCGCCGGAGTTCTACAAGCCGGCGCCGGTGTTCTCGCCGTGCAGCTCGCCGCTGCGGCTGCTGCAGCAGCAGCA CGGGGAGGATCATCAGGAGGAGTACGGCTACGGCAGCAGCGGCGGCTGCTGCAG G ACGCCGACGGGAGGGGAGAGCAACCTGAAGGCGCCAGGGACGTGCCCGCCGGCGCCGAGGAAGCCGCGCGCGCCCGCCGCGCCGTGCCGGAAGCGGCTGTTCGAGGTCGAGGTGTTAAGCCTCCGCCTCGAGGAGCTCGAGCGCCTCTTCTGGCGCCCTCCGCCGCCGCCGCCGACGACGCAGCCGCAGCCGCAGCCGCAGCAGCCGCCGCAGAAGCGCCGGAGGGTGGCCAAGCTCGGCAGCTAGCTAGCTCGCCGGAGTAGCACACGTGTGCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAGTAGTTCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATATTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATACCTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATACTAGTATCTGTGTATGTGATGGCATTGGGGGTGTGTACTCCTGGTACGTATTAGCAATCAATAGGAGCTTAGCTTGAATTTGCTTCCATGCATATATGGCAGTTGCAGTGCAGCCTGTGAAGTAATGACAAGTTGTATGATCCGTGTATACATCCATCAATGTATCAGTGAAT]
[+] EMBL OSC30501             [                                                                                                             ACTCTGTGCGCGTGTNTNTCTCTATGATGTCGGCGTCG CNGAGTTCTACAAGCCGGCGCCGGTGTTCTCGCCGTGCAGCTNGNCGCTGCGGCTGCTGCAGCAG AGCACCGGGGAGGATCATCAGGAGGAGTACGGCTACGGCAGCAGCGGCGGCTGCT CAGNG ACGNCGACGGGAGGNGAGAGCAACCTGAAGGCGCCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_9474#0
CGCCGCTGGATCAACACCACCTCAAGCTCGAAGTGAGCCACTGTCCCAAGCAACCTTCCT
TCTTCTCCCCACCTCGTTTTCTCCAAATCGCCATTCACAACCCATACACACTCTGTGCGC
GTGTGTGTCTCTATGATGTCGGCGTCGCGGAGTTCTACAAGCCGGCGCCGGTGTTCTCGC
CGTGCAGCTCGCCGCTGCGGCTGCTGCAGCAGCAGCACGGGGAGGATCATCAGGAGGAGT
ACGGCTACGGCAGCAGCGGCGGCTGCTGCAGGACGCCGACGGGAGGGGAGAGCAACCTGA
AGGCGCCAGGGACGTGCCCGCCGGCGCCGAGGAAGCCGCGCGCGCCCGCCGCGCCGTGCC
GGAAGCGGCTGTTCGAGGTCGAGGTGTTAAGCCTCCGCCTCGAGGAGCTCGAGCGCCTCT
TCTGGCGCCCTCCGCCGCCGCCGCCGACGACGCAGCCGCAGCCGCAGCCGCAGCAGCCGC
CGCAGAAGCGCCGGAGGGTGGCCAAGCTCGGCAGCTAGCTAGCTCGCCGGAGTAGCACAC
GTGTGCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAG
TAGTTCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATA
TTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATAC
CTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATACTAGTA
TCTGTGTATGTGATGGCATTGGGGGTGTGTACTCCTGGTACGTATTAGCAATCAATAGGA
GCTTAGCTTGAATTTGCTTCCATGCATATATGGCAGTTGCAGTGCAGCCTGTGAAGTAAT
GACAAGTTGTATGATCCGTGTATACATCCATCAATGTATCAGTGAAT

consensusID : consensus_9474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [GCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAGTAGTTCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATATTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATACCTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATACTAGTATCTGTGTATGTGATGGCATTGGGGGTGTGTAAAAAAAAAAAAAA]

[+] EMBL CF315033             [GCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAGTAGTTCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATATTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATACCTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATACTAGTATCTGTGTATGTGATGGCATTGGGGGTGTGTAAAAAAAAAAAAAA]




>consensus_9474#1
GCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAGTAGT
TCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATATTTC
TACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATACCTGC
CTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATACTAGTATCTG
TGTATGTGATGGCATTGGGGGTGTGTAAAAAAAAAAAAAA

consensusID : consensus_9474#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [GAGTAGAAATTTACTGCTGTACTTGCACTATATTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATACCTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]

[+] EMBL CF317704             [GAGTAGAAATTTACTGCTGTACTTGCACTATATTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATACCTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]




>consensus_9474#2
GAGTAGAAATTTACTGCTGTACTTGCACTATATTTCTACTGCTCAAATTATCTCCATGGC
TAGTATAGCTGGTTGTACACTTTGTACTATACCTGCCTAGCTAAGGTTGCTACTACTACT
ACTGTAGCGTATCAGTGCAGTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9474#0      CGCCGCTGGATCAACACCACCTCAAGCTCGAAGTGAGCCACTGTCCCAAGCAACCTTCCT 60
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      TCTTCTCCCCACCTCGTTTTCTCCAAATCGCCATTCACAACCCATACACACTCTGTGCGC 120
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      GTGTGTGTCTCTATGATGTCGGCGTCGCGGAGTTCTACAAGCCGGCGCCGGTGTTCTCGC 180
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      CGTGCAGCTCGCCGCTGCGGCTGCTGCAGCAGCAGCACGGGGAGGATCATCAGGAGGAGT 240
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      ACGGCTACGGCAGCAGCGGCGGCTGCTGCAGGACGCCGACGGGAGGGGAGAGCAACCTGA 300
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      AGGCGCCAGGGACGTGCCCGCCGGCGCCGAGGAAGCCGCGCGCGCCCGCCGCGCCGTGCC 360
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      GGAAGCGGCTGTTCGAGGTCGAGGTGTTAAGCCTCCGCCTCGAGGAGCTCGAGCGCCTCT 420
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      TCTGGCGCCCTCCGCCGCCGCCGCCGACGACGCAGCCGCAGCCGCAGCCGCAGCAGCCGC 480
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      CGCAGAAGCGCCGGAGGGTGGCCAAGCTCGGCAGCTAGCTAGCTCGCCGGAGTAGCACAC 540
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      GTGTGCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAG 600
consensus_9474#1      ----GCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAG 56
consensus_9474#2      ------------------------------------------------------------
                                                                                  

consensus_9474#0      TAGTTCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATA 660
consensus_9474#1      TAGTTCGGAGTTGGTAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATA 116
consensus_9474#2      ---------------------------GAGTAGAAATTT-ACTGCTGTACTTGCACTATA 32
                                                  * * *   *** ********************

consensus_9474#0      TTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATAC 720
consensus_9474#1      TTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATAC 176
consensus_9474#2      TTTCTACTGCTCAAATTATCTCCATGGCTAGTATAGCTGGTTGTACACTTTGTACTATAC 92
                      ************************************************************

consensus_9474#0      CTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATACTAGTA 780
consensus_9474#1      CTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATACTAGTA 236
consensus_9474#2      CTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATAAAAAAA 152
                      ******************************************************  *  *

consensus_9474#0      TCTGTGTATGTGATGGCATTGGGGGTGTGTACTCCTGGTACGTATTAGCAATCAATAGGA 840
consensus_9474#1      TCTGTGTATGTGATGGCATTGGGGGTGTGTAAAAAAAAAAAAAA---------------- 280
consensus_9474#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGC 212
                             *    *    *            *        *   *                

consensus_9474#0      GCTTAGCTTGAATTTGCTTCCATGCATATATGGCAGTTGCAGTGCAGCCTGTGAAGTAAT 900
consensus_9474#1      ------------------------------------------------------------
consensus_9474#2      CG---------------------------------------------------------- 214
                                                                                  

consensus_9474#0      GACAAGTTGTATGATCCGTGTATACATCCATCAATGTATCAGTGAAT 947
consensus_9474#1      -----------------------------------------------
consensus_9474#2      -----------------------------------------------