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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1304 fasta sequence
[CACTCCACTCCCCACCTCACCTCGCCTTTTTAGAGAGAGAAAGAGAAGAGAGCGAGCTCGACGAGGAGAGAGAGAGAGAGAGAGAGGAGTCACCTCACCTGCACCTGAGCTAGAGAGAGAGAGAGAGAGAAGAGGAGGAGGGTGGTGGAGGAGGAGGCCGGGAGGGGGAGATGGAGAGGCCGGCGCCGGTGAGGAAGTCCCACACGTCGACGGCCGACCTGCTGACGTGGCCGGAGGGCGCGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGCACCAGCCGTCGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGTTCGAGAGCCTCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAAGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCAATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGG-AT-CCGCAA--GCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATT-AGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGTTTCTTTTTCTCGGCTTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTGCGGCAAAGCAACGGTGATGGATATCTAATTTAACATTTGGTGTGCAAAAAAAA]
[+] EMBL AK063642 [CACTCCACTCCCCACCTCACCTCGCCTTTTTAGAGAGAGAAAGAGAAGAGAGCGAGCTCGACGAGGAGAGAGAGAGAGAGAGAGAGGAGTCACCTCACCTGCACCTGAGCTAGAGAGAGAGAGAGAGAGAAGAGGAGGAGGGTGGTGGAGGAGGAGGCCGGGAGGGGGAGATGGAGAGGCCGGCGCCGGTGAGGAAGTCCCACACGTCGACGGCCGACCTGCTGACGTGGCCGGAGGGCGCGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGCACCAGCCGTCGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGTTCGAGAGCCTCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAAGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCAATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGG AT CCGCAA GCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATT AGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGTTTCTTTTTCTCGGCTTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTGCGGCAAAGCAACGGTGATGGATATCTAATTTAACA ]
[+] EMBL CA755946 [ ACACGTCGACGGCCGACCTGCTGACGTGGCCGGAGGGCGCGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGCACCAGCCGTCGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGTTCGAGAGCCTCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAAGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCCATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCACGTTCGGAGAGGCTGACACCGACNGC ]
[+] EMBL CA999602 [ AAGGAGATGACAGGAAGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAA ]
[+] EMBL CA999412 [ GTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCAATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGG ATNCCGC A GCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCT ACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATT AGGAGTGAT ]
[+] EMBL AU070310 [ GGTGGGAAC CCGAAAACCCCCCCCGGCGGCAAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGANATTCTTGGACTCGTCCTCCCCGTTNCCGTCATTAANNNNTGATTTTTTTCTTCTANNANAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGTTTCTTTTTCTCGGCNTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTGCGGCAAAGCAACGGTGATGGATATCTNATTTAANATTTGGTGTGCAAAAAAAA]
consensusID : consensus_9476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence
[ACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGGTTCTTTTANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANANAAAANNAAAAAAANNNANNNNTTTTAAGAGGGGNCNAAANACCCAAANNAGGCCAAAANAAAAAAATAATACCCGCGGGGGGGGGGCGCGGTTTCAAACCCTTTTTCTTTTGGGAAAAATCTTGGCGCGCCCCCCTTGTACGCCGCTTTTTCAAACAACACCCGTGTGACAACACGTGTGGGGATATAACAAAATAAGTCCCCTCTGGAGAGACATCTTCCCCATATATTGTNGAGGGTTAAAATGGAAAAGGGGCCCCCCACTCCTTACCCCTCCAATAAGCGGGGGGGGTCTGTGGGGGTGATAACCCACNTCTCTCCTATATCCTTTTCTAAACGCTCCGTGGGGGGGGGGGTTCTNCTCAATCTTCCCCTCCTATTTC]
[+] EMBL CA756906 [ACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGGTTCTTTTANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANANAAAANNAAAAAAANNNANNNNTTTTAAGAGGGGNCNAAANACCCAAANNAGGCCAAAANAAAAAAATAATACCCGCGGGGGGGGGGCGCGGTTTCAAACCCTTTTTCTTTTGGGAAAAATCTTGGCGCGCCCCCCTTGTACGCCGCTTTTTCAAACAACACCCGTGTGACAACACGTGTGGGGATATAACAAAATAAGTCCCCTCTGGAGAGACATCTTCCCCATATATTGTNGAGGGTTAAAATGGAAAAGGGGCCCCCCACTCCTTACCCCTCCAATAAGCGGGGGGGGTCTGTGGGGGTGATAACCCACNTCTCTCCTATATCCTTTTCTAAACGCTCCGTGGGGGGGGGGGTTCTNCTCAATCTTCCCCTCCTATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9476#0 CACTCCACTCCCCACCTCACCTCGCCTTTTTAGAGAGAGAAAGAGAAGAGAGCGAGCTCG 60
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 ACGAGGAGAGAGAGAGAGAGAGAGAGGAGTCACCTCACCTGCACCTGAGCTAGAGAGAGA 120
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 GAGAGAGAGAAGAGGAGGAGGGTGGTGGAGGAGGAGGCCGGGAGGGGGAGATGGAGAGGC 180
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 CGGCGCCGGTGAGGAAGTCCCACACGTCGACGGCCGACCTGCTGACGTGGCCGGAGGGCG 240
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 CGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGCACCAGCCGT 300
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 CGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGTTCGAGAGCC 360
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAAGCGGCATAT 420
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCC 480
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 GAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGG 540
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 AAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGC 600
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCAATGCGA 660
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 AATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCA 720
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 ACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCA 780
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 CGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGA 840
consensus_9476#1 ---------------------ACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGA 39
***************************************
consensus_9476#0 AGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGG 900
consensus_9476#1 AGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGG 99
************************************************************
consensus_9476#0 AGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACG 960
consensus_9476#1 AGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACG 159
************************************************************
consensus_9476#0 GCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCGGCGAGAGCA 1020
consensus_9476#1 GCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCGGCGAGAGCA 219
************************************************************
consensus_9476#0 GCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTAC 1080
consensus_9476#1 GCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTAC 279
************************************************************
consensus_9476#0 GACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGA 1140
consensus_9476#1 GACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGA 339
************************************************************
consensus_9476#0 GAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGTTTCTT 1200
consensus_9476#1 GAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGGTTCTT 399
****************************************************** *****
consensus_9476#0 TTTCTCGGCTTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTGCGGCAAAGC 1260
consensus_9476#1 TTANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAA 459
** ** * * * ***
consensus_9476#0 AACGGTGATGGATATCTAATTTAACATTTGGTGTGCAAAAAAAA---------------- 1304
consensus_9476#1 AAAAAAAAAAAAAAANAAAAAANANAAAANNAAAAAAANNNANNNNTTTTAAGAGGGGNC 519
** * * * ** * * ** *
consensus_9476#0 ------------------------------------------------------------
consensus_9476#1 NAAANACCCAAANNAGGCCAAAANAAAAAAATAATACCCGCGGGGGGGGGGCGCGGTTTC 579
consensus_9476#0 ------------------------------------------------------------
consensus_9476#1 AAACCCTTTTTCTTTTGGGAAAAATCTTGGCGCGCCCCCCTTGTACGCCGCTTTTTCAAA 639
consensus_9476#0 ------------------------------------------------------------
consensus_9476#1 CAACACCCGTGTGACAACACGTGTGGGGATATAACAAAATAAGTCCCCTCTGGAGAGACA 699
consensus_9476#0 ------------------------------------------------------------
consensus_9476#1 TCTTCCCCATATATTGTNGAGGGTTAAAATGGAAAAGGGGCCCCCCACTCCTTACCCCTC 759
consensus_9476#0 ------------------------------------------------------------
consensus_9476#1 CAATAAGCGGGGGGGGTCTGTGGGGGTGATAACCCACNTCTCTCCTATATCCTTTTCTAA 819
consensus_9476#0 -----------------------------------------------
consensus_9476#1 ACGCTCCGTGGGGGGGGGGGTTCTNCTCAATCTTCCCCTCCTATTTC 866
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||