These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 814 fasta sequence [TCTCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGCAGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTGCTCGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGC-GGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCGGTGCACGAGCACAAGGAACTCCTCACCCAGACAGCC] [+] EMBL C29120 [TCTCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGCAGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTNCTCGTAGAATCGATTGGNTCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACAT ] [+] EMBL OSC17722 [ TCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGCAGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTGCTCGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGATCCACAACTTCTC ] [+] EMBL CB622845 [ AGGGACGCCGTTGCTGCTCCTCCTTGAGGCAGAGCTCGCAGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTGCACGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGC GGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCGGTGCACGAGCACAAGGA ] [+] EMBL CB669737 [ GCCTTTTGCACTCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTGCTCGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGC GGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCGGTGCACGAGCACAAGGAACTCCTCACCCAGACAGCC] [+] EMBL AU070873 [ AAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGCGGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCAT ] consensusID : consensus_9485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [GGACATCCAATTCACCTGCCCTTAAGCCAGATGACACAAACAGAAGAAGGAACTAAACAGTCTACTAAAAATGAAAAAAAAAAGATTAAAGACTATCTTAACCATGAATGGTCATCACCAGCAGCAACAGCAAGGAATCTAGTCGCGGCGGCGTCTCCTTCGCAGAAATACGGGAAGGGGGCGGCGTCNTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAACATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGA] [+] EMBL CB622846 [GGACATCCAATTCACCTGCCCTTAAGCCAGATGACACAAACAGAAGAAGGAACTAAACAGTCTACTAAAAATGAAAAAAAAAAGATTAAAGACTATCTTAACCATGAATGGTCATCACCAGCAGCAACAGCAAGGAATCTAGTCGCGGCGGCGTCTCCTTCGCAGAAATACGGGAAGGGGGCGGCGTCNTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAACATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9485#0 TCTCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGC 60 consensus_9485#1 -----------------------GGACATCCAATTCACCTGCCCTTAAGCCAGATGACAC 37 **** * **** ** **** * * consensus_9485#0 AGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTG 120 consensus_9485#1 AAACAGAAGAAGG--AACTAAACAG--TCTACTAAAAATGAAAAAAAAAA---------G 84 * * * * ** * * ** *** * * *** *** * consensus_9485#0 CTCGTAGAATCGATTGG--ATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGG 178 consensus_9485#1 ATTAAAGACTATCTTAACCATGAATGGTCATCACCAGCAGCAACAGCAAGGAATCTAGTC 144 * *** * ** ** ** *** * * * ***** * * consensus_9485#0 GTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCC 238 consensus_9485#1 GCGGCGGCGTCTCCTTCGCAGAAATACGGGAAGGGGGCGGCGTCNTCGGTGACATCCTCC 204 * *** * * * * * * * ** ** **** *************** consensus_9485#0 CCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCG 298 consensus_9485#1 CCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCG 264 ************************************************************ consensus_9485#0 CCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTG 358 consensus_9485#1 CCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTG 324 ************************************************************ consensus_9485#0 CTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAG 418 consensus_9485#1 CTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAG 384 ************************************************************ consensus_9485#0 CACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTC 478 consensus_9485#1 CACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTC 444 ************************************************************ consensus_9485#0 GCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTC 538 consensus_9485#1 GCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTC 504 ************************************************************ consensus_9485#0 CTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGAC 598 consensus_9485#1 CTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGAC 564 ************************************************************ consensus_9485#0 CTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATG 658 consensus_9485#1 CTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATG 624 ************************************************************ consensus_9485#0 GAGTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTG 718 consensus_9485#1 GAGTCCGAGAACATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTG 684 *********** ************************************************ consensus_9485#0 GAGCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCG 778 consensus_9485#1 GAGCTCCTCCACCTCCTCGCCGCGCGCCCCGA---------------------------- 716 ******************************** consensus_9485#0 GTGCACGAGCACAAGGAACTCCTCACCCAGACAGCC 814 consensus_9485#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||