Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9488 cluster # 9488       Sequences # 6       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9488#0 length = 1127 sequences # 6  
consensusID : consensus_9488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1127
fasta sequence 
                              [CCCCACGAACGCAAACCCCCACAAGTACCACCTCGCAAATGCTCCATTAGCTCCCGAAATCCAAACCACCCCCCTCCTCCCCTCACGGGCTCACGGCCTCACCCACCCACCAACCCATCCATCCAACTCCGCGGCGGCGGCGGCGGCGATGACGACCCGATCCAACGGCGAGCACCACCACGGGCCGCCCTCGTACCAGCAGCGGCGCCCGCACTACGGGGGCGGGTACGGCGGCGGGTCGGCCTCGTTCCGCGGCTGCTGCTGCTGCATCTTCCTGCTGCTCACCTTCCTGGCCCTCCTCGCGCTGGCCGTCGCGCTCGTCGTGGTGCTGGTGGTGAAGCCGCGGAAGCCGCAGTTCGACC-TCAACCAGGTGTCCGTCCAG-TACCTCCTCGTCACCCCGCCGTCCTCCGCCGCC-TCCGCCGTGGGGGGGACCGTGGCCGCCGCGGTCCCCGCCGCGGCC-TACCTCTCCC-TCAACATCACGCTCCTCTTCACCGCCGTGAACCCCAACAAGGTCGGCATCCGCTACGGCGCCACGGCGTTCGACGTCATGTACCACGGCGTGCCGCTCGGGGTGGCGGCCGTGCCCGGGTTCGAGCAGCCGGCGCACAGCACCCGCCTGCTCCAGACCCGCGTCATCGTCGACCGCTTCAACGTGCTCCAGGCCGACGCCCAGGACCTCGTCCGCGACGCCGCGATCAGCGACCGCGTCGACCTCCGCATCACCGGCGACGTCGGCGCCAAGATCCTCGTGCTCGGCTTCTCCTCCCCAAAAGTCCAGGTGTCGGTGGATTGCGCGATCGCCATCAGTCCGAGGAGGCAGTCACTGACATACAAGCAATGTGGCGTGGATGGCCTAAGCGTCTAGCAGCAGCAACCAACCACCACACCATCGCAGCAACAGCAGCAGCAGAAGAAGAAGAAGGATGCAGAAGGCTTAATCTAATGGAGATAGATAAGTGGATGTGACCCGTGTTTGTCGATTCTAATCTCTCTTTCTCTATCTAATCCTGGGTTCCGATTCCTGTACGTGGGGGGTAAATTTTGAGCTCTCTCACCTCACCCTAGAGGAGGAGGTCGCCGCTGATTTTTGTGAATTACTGTCCGGTAATTATCACTATCGCCCAATT]

[+] EMBL AU162609             [CCCCACGAACGCAAACCCCCACAAGTACCACCTCGCAAATGCTCCATTAGCTCCCGAAATCCAAACCACCCCCCTCCTCCCCTCACGGGCTCACGGCCTCACCCACCCACCAACCCATCCATCCAACTCCGCGGCGGCGGCGGCGGCGATGACGACCCGATCCAACGGCGAGCACCACCACGGGCCGCCCTCGTACCAGCAGCGGCGCCCGCACTACGGGGGCGGGTACGGCGGCGGGTCGGCCTCGTTCCGCGGCTGCTGCTGCTGCATCTTCCTGCTGCTCACCTTCCTGGCCCTCCTCGCGCTGGCCGTCGCGCTCGTCGTGGTGCTGGTGGTGAAGCCGCGGAAGCCGCAGTTCGACCTTCAACCAGGTGTCCGTCCAGTTACCTCCTCGTCACCCCGCCGTCCTCCGCCGCCTTCCGCCGTGGGGGGGACCGTGGCCGCCGCGGTCCCCGCCGCGGCCTTACCTCTCCCTTCAACATCAAGCTCCTCTTCANCGCCGTGAACCCCAACAAGGTCGGCATCCGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK061109             [            AAACCCCCACAAGTACCACCTCGCAAATGCTCCATTAGCTCCCGAAATCCAAACCACCCCCCTCCTCCCCTCACGGGCTCACGGCCTCACCCACCCACCAACCCATCCATCCAACTCCGCGGCGGCGGCGGCGGCGATGACGACCCGATCCAACGGCGAGCACCACCACGGGCCGCCCTCGTACCAGCAGCGGCGCCCGCACTACGGGGGCGGGTACGGCGGCGGGTCGGCCTCGTTCCGCGGCTGCTGCTGCTGCATCTTCCTGCTGCTCACCTTCCTGGCCCTCCTCGCGCTGGCCGTCGCGCTCGTCGTGGTGCTGGTGGTGAAGCCGCGGAAGCCGCAGTTCGACC TCAACCAGGTGTCCGTCCAG TACCTCCTCGTCACCCCGCCGTCCTCCGCCGCC TCCGCCGTGGGGGGGACCGTGGCCGCCGCGGTCCCCGCCGCGGCC TACCTCTCCC TCAACATCACGCTCCTCTTCACCGCCGTGAACCCCAACAAGGTCGGCATCCGCTACGGCGCCACGGCGTTCGACGTCATGTACCACGGCGTGCCGCTCGGGGTGGCGGCCGTGCCCGGGTTCGAGCAGCCGGCGCACAGCACCCGCCTGCTCCAGACCCGCGTCATCGTCGACCGCTTCAACGTGCTCCAGGCCGACGCCCAGGACCTCGTCCGCGACGCCGCGATCAGCGACCGCGTCGACCTCCGCATCACCGGCGACGTCGGCGCCAAGATCCTCGTGCTCGGCTTCTCCTCCCCAAAAGTCCAGGTGTCGGTGGATTGCGCGATCGCCATCAGTCCGAGGAGGCAGTCACTGACATACAAGCAATGTGGCGTGGATGGCCTAAGCGTCTAGCAGCAGCAACCAACCACCACACCATCGCAGCAACAGCAGCAGCAGAAGAAGAAGAAGGATGCAGAAGGCTTAATCTAATGGAGATAGATAAGTGGATGTGACCCGTGTTTGTCGATTCTAATCTCTCTTTCTCTATCTAATCCTGGGTTCCGATTCCTGTACGTGGGGGGTAAATTTTGAGCTCTCTCACCTCACCCTAGAGGAGGAGGTCGCCGCTGATTTTTGTGAATTACTGTCCGGTAATTATCACTATCGCCCAATT]
[+] EMBL AK099159             [              ACCCCCACAAGTACCACCTCGCAAATGCTCCATTAGCTCCCGAAATCCAAACCACCCCCCTCCTCCCCTCACGGGCTCACGGCCTCACCCACCCACCAACCCATCCATCCAACTCCGCGGCGGCGGCGGCGGCGATGACGACCCGATCCAACGGCGAGCACCACCACGGGCCGCCCTCGTACCAGCAGCGGCGCCCGCACTACGGGGGCGGGTACGGCGGCGGGTCGGCCTCGTTCCGCGGCTGCTGCTGCTGCATCTTCCTGCTGCTCACCTTCCTGGCCCTCCTCGCGCTGGCCGTCGCGCTCGTCGTGGTGCTGGTGGTGAAGCCGCGGAAGCCGCAGTTCGACC TCAACCAGGTGTCCGTCCAG TACCTCCTCGTCACCCCGCCGTCCTCCGCCGCC TCCGCCGTGGGGGGGACCGTGGCCGCCGCGGTCCCCGCCGCGGCC TACCTCTCCC TCAACATCACGCTCCTCTTCACCGCCGTGAACCCCAACAAGGTCGGCATCCGCTACGGCGCCACGGCGTTCGACGTCATGTACCACGGCGTGCCGCTCGGGGTGGCGGCCGTGCCCGGGTTCGAGCAGCCGGCGCACAGCACCCGCCTGCTCCAGACCCGCGTCATCGTCGACCGCTTCAACGTGCTCCAGGCCGACGCCCAGGACCTCGTCCGCGACGCCGCGATCAGCGACCGCGTCGACCTCCGCATCACCGGCGACGTCGGCGCCAAGATCCTCGTGCTCGGCTTCTCCTCCCCAAAAGTCCAGGTGTCGGTGGATTGCGCGATCGCCATCAGTCCGAGGAGGCAGTCACTGACATACAAGCAATGTGGCGTGGATGGCCTAAGCGTCTAGCAGCAGCAACCAACCACCACACCATCGCAGCAACAGCAGCAGCAGAAGAAGAAGAAGGATGCAGAAGGCTTAATCTAATGGAGATAGATAAGTGGATGTGACCCGTGTTTGTCGATTCTAATCTCTCTTTCTCTATCTAATCCTGGGTTCCGATTCCTGTACGTGGGGGGTAAATTTTGAGCTCTCTCACCTCACCCTAGAGGAGGAGGTCGCCGCTGATTTTTGTGAATTACTGTCCGGTAATTATCACTATCGC      ]
[+] EMBL AK099322             [                                            CATTAGCTCCCGAAATCCAAACCACCCCCCTCCTCCCCTCACGGGCTCACGGCCTCACCCACCCACCAACCCATCCATCCAACTCCGCGGCGGCGGCGGCGGCGATGACGACCCGATCCAACGGCGAGCACCACCACGGGCCGCCCTCGTACCAGCAGCGGCGCCCGCACTACGGGGGCGGGTACGGCGGCGGGTCGGCCTCGTTCCGCGGCTGCTGCTGCTGCATCTTCCTGCTGCTCACCTTCCTGGCCCTCCTCGCGCTGGCCGTCGCGCTCGTCGTGGTGCTGGTGGTGAAGCCGCGGAAGCCGCAGTTCGACC TCAACCAGGTGTCCGTCCAG TACCTCCTCGTCACCCCGCCGTCCTCCGCCGCC TCCGCCGTGGGGGGGACCGTGGCCGCCGCGGTCCCCGCCGCGGCC TACCTCTCCC TCAACATCACGCTCCTCTTCACCGCCGTGAACCCCAACAAGGTCGGCATCCGCTACGGCGCCACGGCGTTCGACGTCATGTACCACGGCGTGCCGCTCGGGGTGGCGGCCGTGCCCGGGTTCGAGCAGCCGGCGCACAGCACCCGCCTGCTCCAGACCCGCGTCATCGTCGACCGCTTCAACGTGCTCCAGGCCGACGCCCAGGACCTCGTCCGCGACGCCGCGATCAGCGACCGCGTCGACCTCCGCATCACCGGCGACGTCGGCGCCAAGATCCTCGTGCTCGGCTTCTCCTCCCCAAAAGTCCAGGTGTCGGTGGATTGCGCGATCGCCATCAGTCCGAGGAGGCAGTCACTGACATACAAGCAATGTGGCGTGGATGGCCTAAGCGTCTAGCAGCAGCAACCAACCACCACACCATCGCAGCAACAGCAGCAGCAGAAGAAGAAGAAGGATGCAGAAGGCTTAATCTAATGGAGATAGATAAGTGGATGTGACCCGTGTTTGTCGATTCTAATCTCTCTTTCTCTATCTAATCCTGGGTTCCGATTCCTGTACGTGGGGGGTAAATTTTGAGCTCTCTCACCTCACCCTAGAGGAGGAGGTCGCCGCTGATTTTTGTGAATTACTGTCCGGTAATTATCACTATCGC      ]
[+] EMBL AK104530             [                                                         AATCCAAACCACCCCCCTCCTCCCCTCACGGGCTCACGGCCTCACCCACCCACCAACCCATCCATCCAACTCCGCGGCGGCGGCGGCGGCGATGACGACCCGATCCAACGGCGAGCACCACCACGGGCCGCCCTCGTACCAGCAGCGGCGCCCGCACTACGGGGGCGGGTACGGCGGCGGGTCGGCCTCGTTCCGCGGCTGCTGCTGCTGCATCTTCCTGCTGCTCACCTTCCTGGCCCTCCTCGCGCTGGCCGTCGCGCTCGTCGTGGTGCTGGTGGTGAAGCCGCGGAAGCCGCAGTTCGACC TCAACCAGGTGTCCGTCCAG TACCTCCTCGTCACCCCGCCGTCCTCCGCCGCC TCCGCCGTGGGGGGGACCGTGGCCGCCGCGGTCCCCGCCGCGGCC TACCTCTCCC TCAACATCACGCTCCTCTTCACCGCCGTGAACCCCAACAAGGTCGGCATCCGCTACGGCGCCACGGCGTTCGACGTCATGTACCACGGCGTGCCGCTCGGGGTGGCGGCCGTGCCCGGGTTCGAGCAGCCGGCGCACAGCACCCGCCTGCTCCAGACCCGCGTCATCGTCGACCGCTTCAACGTGCTCCAGGCCGACGCCCAGGACCTCGTCCGCGACGCCGCGATCAGCGACCGCGTCGACCTCCGCATCACCGGCGACGTCGGCGCCAAGATCCTCGTGCTCGGCTTCTCCTCCCCAAAAGTCCAGGTGTCGGTGGATTGCGCGATCGCCATCAGTCCGAGGAGGCAGTCACTGACATACAAGCAATGTGGCGTGGATGGCCTAAGCGTCTAGCAGCAGCAACCAACCACCACACCATCGCAGCAACAGCAGCAGCAGAAGAAGAAGAAGGATGCAGAAGGCTTAATCTAATGGAGATAGATAAGTGGATGTGACCCGTGTTTGTCGATTCTAATCTCTCTTTCTCTATCTAATCCTGGGTTCCGATTCCTGTACGTGGGGGGTAAATTTTGAGCTCTCTCACCTCACCCTAGAGGAGGAGGTCGCCGCTGATTTTTGTGAATTACTGTCCGGTAAT                  ]
[+] EMBL AU071012             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATCGCCATCAGTCCGAGGAGGCAGTCACTGACATACAAGCAATGTGGCGTGGATGGCCTAAGCGTCTAGCAGCAGCAACCAACCACCACACCATCGCAGCAACAGCAGCAGCAGAAGAAGAAGAAGGATGCAGAAGGCTTAATCTAATGGAGATAGATAAGTGGATGTGACCCGTGTTTGTCGATTCTAATCTCTCTTTCTCTATCTAATCCTGGGTTCCGATTCCTGTACGTGGGGGGTAAATTTTGAGCTCTCTCACCTCACCCTAGAGGAGGAGGTCGCCGCTGATTTTTGTGAATTACTGTCCGGTAATTATCACTAaaaaaa    ]




>consensus_9488#0
CCCCACGAACGCAAACCCCCACAAGTACCACCTCGCAAATGCTCCATTAGCTCCCGAAAT
CCAAACCACCCCCCTCCTCCCCTCACGGGCTCACGGCCTCACCCACCCACCAACCCATCC
ATCCAACTCCGCGGCGGCGGCGGCGGCGATGACGACCCGATCCAACGGCGAGCACCACCA
CGGGCCGCCCTCGTACCAGCAGCGGCGCCCGCACTACGGGGGCGGGTACGGCGGCGGGTC
GGCCTCGTTCCGCGGCTGCTGCTGCTGCATCTTCCTGCTGCTCACCTTCCTGGCCCTCCT
CGCGCTGGCCGTCGCGCTCGTCGTGGTGCTGGTGGTGAAGCCGCGGAAGCCGCAGTTCGA
CCTCAACCAGGTGTCCGTCCAGTACCTCCTCGTCACCCCGCCGTCCTCCGCCGCCTCCGC
CGTGGGGGGGACCGTGGCCGCCGCGGTCCCCGCCGCGGCCTACCTCTCCCTCAACATCAC
GCTCCTCTTCACCGCCGTGAACCCCAACAAGGTCGGCATCCGCTACGGCGCCACGGCGTT
CGACGTCATGTACCACGGCGTGCCGCTCGGGGTGGCGGCCGTGCCCGGGTTCGAGCAGCC
GGCGCACAGCACCCGCCTGCTCCAGACCCGCGTCATCGTCGACCGCTTCAACGTGCTCCA
GGCCGACGCCCAGGACCTCGTCCGCGACGCCGCGATCAGCGACCGCGTCGACCTCCGCAT
CACCGGCGACGTCGGCGCCAAGATCCTCGTGCTCGGCTTCTCCTCCCCAAAAGTCCAGGT
GTCGGTGGATTGCGCGATCGCCATCAGTCCGAGGAGGCAGTCACTGACATACAAGCAATG
TGGCGTGGATGGCCTAAGCGTCTAGCAGCAGCAACCAACCACCACACCATCGCAGCAACA
GCAGCAGCAGAAGAAGAAGAAGGATGCAGAAGGCTTAATCTAATGGAGATAGATAAGTGG
ATGTGACCCGTGTTTGTCGATTCTAATCTCTCTTTCTCTATCTAATCCTGGGTTCCGATT
CCTGTACGTGGGGGGTAAATTTTGAGCTCTCTCACCTCACCCTAGAGGAGGAGGTCGCCG
CTGATTTTTGTGAATTACTGTCCGGTAATTATCACTATCGCCCAATT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)