These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1277 fasta sequence [ACCATAAGAGACTCCCGCTTCCGCCAACCGCCCACCACCCGTTCGACCATTTGCTTGCCCCCGCTCCTCGGTTCCTCCCGACTCCACCGGCGCGCGCGCGGGAAGGGACCAGAGCAGCCACGGCGCCGCCGCGCATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCGNCGCAGAGTTCGCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGATGCCACAGCCTGGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCA-NGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTCTGGCCGACCCGGACCTGCAC-TTCGAGTGGCCGCCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACNCCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C91853 [ACCATAAGAGACTCCCGCTTCCGCCAACCGCCCACCACCCGTTCGACCATTTGCTTGCCCCCGCTCCTCGGTTCCTCCCGACTCCACCGGCGCGCGCGCGGGAAGGGACCAGAGCAGCCACGGCGCCGCCGCGCATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCGNCGCAGAGTTCGCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGATGCCACAGCCTGGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCA NGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTTGCGGGACAACAAATTCTGCTACTACAACAACTACAACAACTTCCAGCCCCGGAATTTTTG AAGTGTTNCCGCCGtaatttga ] [+] EMBL BP184975 [ acgaGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCAGCGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTCTGGCCGACCCGGACCTGCAC TTCGAGTGGCCGCCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTT ] [+] EMBL BP184488 [ GCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCCCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCG CAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTGCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTtc ] [+] EMBL AU075672 [ CACCAAGAGTCTGGCCGACCCGGACCTGCACTTTCGANTGGCC CCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACNCCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AU225768 [ ccgctGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTAAAAAAAAgcggc ] consensusID : consensus_9495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [ACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACACCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTA] [+] EMBL AU174626 [ACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACACCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9495#0 ACCATAAGAGACTCCCGCTTCCGCCAACCGCCCACCACCCGTTCGACCATTTGCTTGCCC 60 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 CCGCTCCTCGGTTCCTCCCGACTCCACCGGCGCGCGCGCGGGAAGGGACCAGAGCAGCCA 120 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 CGGCGCCGCCGCGCATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCGNCGCAGAGTTC 180 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 GCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGATGCCACAGCCT 240 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 GGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCANGGCGGCGG 300 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 CGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACA 360 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 ACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCA 420 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 AGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTT 480 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 CGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGA 540 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 AGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCC 600 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 TCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGA 660 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 AGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCA 720 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 CCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGG 780 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 ACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTC 840 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 TGGCCGACCCGGACCTGCACTTCGA-GTGGCCGCCGCCGGCGTTCGACATGGCGTCCTAC 899 consensus_9495#1 ------ACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGCGTTCGACATGGCGTCCTAC 54 ** ** * ** *** ** ************************ consensus_9495#0 TGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCA 959 consensus_9495#1 TGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCA 114 ************************************************************ consensus_9495#0 TGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTA 1019 consensus_9495#1 TGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTA 174 ************************************************************ consensus_9495#0 CNCCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGG 1079 consensus_9495#1 CACCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGG 234 * ********************************************************** consensus_9495#0 TGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGA 1139 consensus_9495#1 TGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGA 294 ************************************************************ consensus_9495#0 GGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGG 1199 consensus_9495#1 GGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGG 354 ************************************************************ consensus_9495#0 GCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAA 1259 consensus_9495#1 GCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTA----------------------- 391 ************************************* consensus_9495#0 AAAAAAAAAAAAAAAAAA 1277 consensus_9495#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||