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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1374 fasta sequence
[GTCGGGCTCGCCTCTCGACCTCGGTGTTGCGCTCTCCTCCGCTCGGACCGCTCCTCGCCGGCGATCCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCCGTCGATCTGCGCTGCCACGGCCGGGGGGGAAGCTTGTGCTGAGGCGCAGTCCTGAAGAGAACCCCACTTGGGAGGCCGGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAA-GGCGGCGGAGGAGTGGGAGGGCCCGAC-GGCGGCGGAGTTGAAGGCGG-CCGAAG-GGGAGGAGAT-CCAGGGCGGGGTGCGGGTGAAGGGGTGGGTCATCCGGTCCCACAACGGCCCCATCCTCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGATGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTGGCATTAGATTATATTTCAATGCGCTTGATGCTCTGAAGGCATGGAAACATGAAGCACTACCACCTGTTGAAGTTCCTGCGGCAGCAAAGTGGAAGTTCAGGAGTAAGCCTTCTGATCAAGTAATA-CTT-GATTATGACTATACATT-CACGACACCGTACAATGGGAGTGATGCTTTGG-TTCAGAACCCAGATAGTATTCAAACAAGTTTGGATGAACCCCGCAATTTGTGTTGGGAGGATTCTGAGGATCGGATTGA-CCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATGAAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAG-CAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTTATCAGCTTTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAACGGGGCTTTGCATGTTTCTGATACAGANCGAGTTTACAGAGTTCAGACTAAAAAAAA]
[+] EMBL OS0768A [GTCGGGCTCGCCTCTCGACCTCGGTGTTGCGCTCTCCTCCGCTCGGACCGCTCCTCGCCGGCGATCCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCCGTCGATCTGCGCTGCCACGGCCGGGGGGGAAGCTTGTGCTGAGGCGCAGTCCTGAAGAGAACCCCACTTGGGAGGCCGGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAAGGGCGGCGGAGGAGTGGGAGGGCCCGACGGGCGGCGGAGTTGAAGGCGGACCGAAGAGGGAGGAGATACCAGGGCGG ]
[+] EMBL AK103511 [ CTCTCGACCTCGGTGTTGCGCTCTCCTCCGCTCGGACCGCTCCTCGCCGGCGATCCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCCGTCGATCTGCGCTGCCACGGCCGGGGGGGAAGCTTGTGCTGAGGCGCAGTCCTGAAGAGAACCCCACTTGGGAGGCCGGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAA GGCGGCGGAGGCGTGGGAGGGCCCGAC GGCGGCGGAGCTGAAGGCGG CCGGCG CGGAGGCGAT CCCCGGCGGGGTGCGGGTGAAGGGGTGGGTCATCCGGTCCCACAACGGCCCCATCCTCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGATGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTGGCATTAGATTATATTTCAATGCGCTTGATGCTCTGAAGGCATGGAAACATGAAGCACTACCACCTGTTGAAGTTCCTGCGGCAGCAAAGTGGAAGTTCAGGAGTAAGCCTTCTGATCAAGTAATA CTT GATTATGACTATACATT CACGACACCGTACAATGGGAGTGATGCTTTGG TTCAGAACCCAGATAGTATTCAAACAAGTTTGGATGAACCCCGCAATTTGTGTTGGGAGGATTCTGAGGATCGGATTGA CCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATGAAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAG CAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCG TTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTT ]
[+] EMBL C98137 [ AGTAATACCTTGGATTATGACTATACATTNCACGACCCCGTACAATGGNAGTGATGCTTTGGTTTCAG ACCCAGATAGTATTCAAACAAGTTTGGATGAACCCCGCAATTTGTGTTGGGAGGATTCTGAGGATCGGATTGACCCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATGAAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAG CAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTTATCAGCTTTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAACGGGGCTTTGCATGTTTCTGATACAGANCGAGTTTACAGAGTTCAGACTAAAAAAAA]
[+] EMBL AU075993 [ tcnCTTTGG TTCAGACCCCAGATAGTATNCAAACAAGTTTGGATGAACCCCGTAATTTGTGTTGGGAGGATTCTGAGGATCGGATTGA CCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATGAAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAG CAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTTATCAGCTTTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAAaaaaaaaa ]
[+] EMBL BI805099 [ GCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAGCCAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCC AAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGC ATAGTATAAAAATTCTTGTGGTAAAaaaaa ]
consensusID : consensus_9498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[CNGNGGGANTANNCNCNCCACNTNTNGGGANGGCCGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAAGGCGGCGGAGNGTGGGAGGGCCCGACGGCGGCGGACTGAAGGCGCCGGCNGGAGGNATCCCCGGCGGTTGCGGGTGAAGGGGTNGGTCATCCGGTCCCACAACGGCCCCATCCTCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGATGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTTGCATTAGATTATATTTCAATGCGCTTGATGCTCTNAAGGCATGGAAACATGAAGCACTACCACCTG]
[+] EMBL C26548 [CNGNGGGANTANNCNCNCCACNTNTNGGGANGGCCGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAAGGCGGCGGAGNGTGGGAGGGCCCGACGGCGGCGGACTGAAGGCGCCGGCNGGAGGNATCCCCGGCGGTTGCGGGTGAAGGGGTNGGTCATCCGGTCCCACAACGGCCCCATCCTCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGATGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTTGCATTAGATTATATTTCAATGCGCTTGATGCTCTNAAGGCATGGAAACATGAAGCACTACCACCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9498#0 GTCGGGCTCGCCTCTCGACCTCGGTGTTGCGCTCTCCTCCGCTCGGACCGCTCCTCGCCG 60
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 GCGATCCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCCGTCGATCTGCGCTGCCACGGCC 120
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 GGGGGGGAAGCTTGTGCTGAGGCGCAGTCCTGAAGAGAACCCCACTTGGGAGGCCGGGGG 180
consensus_9498#1 ---------------------CNGNGGGANTANNCNCNCCACNTNTNGGGANGGCCGGGG 39
* * * * * * **** * * ****
consensus_9498#0 GCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTA 240
consensus_9498#1 GCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTA 99
************************************************************
consensus_9498#0 AGGCGGCGGAGGAGTGGGAGGGCCCGACGGCGGCGGAGTTGAAGGCGGCCGAAGGGGAGG 300
consensus_9498#1 AGGCGGCGGAGN-GTGGGAGGGCCCGACGGCGGCGGA-CTGAAGGCGCC---GGCNGGAG 154
*********** ************************ ******** * * * *
consensus_9498#0 AGATCCAGGGCGGGGTGCGGGTGAAGGGGTGGGTCATCCGGTCCCACAACGGCCCCATCC 360
consensus_9498#1 GNATCCCCGGCGGT-TGCGGGTGAAGGGGTNGGTCATCCGGTCCCACAACGGCCCCATCC 213
**** ***** *************** *****************************
consensus_9498#0 TCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGA 420
consensus_9498#1 TCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGA 273
************************************************************
consensus_9498#0 TGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTGGCATTAGATTATATT 480
consensus_9498#1 TGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTTGCATTAGATTATATT 333
******************************************** ***************
consensus_9498#0 TCAATGCGCTTGATGCTCTGAAGGCATGGAAACATGAAGCACTACCACCTGTTGAAGTTC 540
consensus_9498#1 TCAATGCGCTTGATGCTCTNAAGGCATGGAAACATGAAGCACTACCACCTG--------- 384
******************* *******************************
consensus_9498#0 CTGCGGCAGCAAAGTGGAAGTTCAGGAGTAAGCCTTCTGATCAAGTAATACTTGATTATG 600
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 ACTATACATTCACGACACCGTACAATGGGAGTGATGCTTTGGTTCAGAACCCAGATAGTA 660
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 TTCAAACAAGTTTGGATGAACCCCGCAATTTGTGTTGGGAGGATTCTGAGGATCGGATTG 720
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 ACCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATG 780
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 AAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAA 840
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 CTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGA 900
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 GGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAGCAAAACCCATTGTACTGCGTG 960
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 AATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACT 1020
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 CTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGA 1080
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 TCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTT 1140
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 TTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGG 1200
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 ATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTA 1260
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 CTGGGGCTTATCAGCTTTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAACGG 1320
consensus_9498#1 ------------------------------------------------------------
consensus_9498#0 GGCTTTGCATGTTTCTGATACAGANCGAGTTTACAGAGTTCAGACTAAAAAAAA 1374
consensus_9498#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||