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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1754 fasta sequence
[AGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCACGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTCGCCGGCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACAAGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGGTGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGGACCTCCTCGCCGCCCAAGGCGCAGGCACGGCGAAGAAGA-TNGATGAGCTGCACCTTGTGG-TCGTGGATCG-CAATCACC-ACCGTGCAAGC-AATTCGAACGCCGGC--GTCCGCG-AGGATAA-GATGACCAGTCATCAGCACGCCGCTCCTGGTTATAGCCGCCCAAACAATTCAGCACGAATGAAGCAGAACACCGCCGGCATCATGTTCGGCAACCACACCGCTTCCGATCATGGCCGCCGCTTAAACAGTTCAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATTCAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGCTAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTGCCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGATAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTCTCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGAACGGCAACAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGAAGGCTTCCACCGCGGCTACGGCTAGGCCGCCATTACAGGGCTCCTACTCCGACGCCGGCGTCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATCCAACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATCTAAGCTCCGGCAGAGGACGCAGCCTGTGCTTGATCCATGACCCTGCATCTGCATGATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAGTATGTACTATATGCCTATACGATTAATATCATTAAACTTTAATGCTACAGGACAGTATCCCGTTCGGATGATACTCGAAAATATAGGCGATACCTCATATGTATCATCCCATCCGTACTGTCGTGTAA]
[+] EMBL AU076252 [AGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCACGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTCGCCGGCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACAAGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGGTGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGGACCTCCTCGCCGCCCAAGGCGCAGGCACGGCGAAGAAGATTNGATGAGCTGCACCTTGTGGTTCGTGGATCGNCAATCACCAACCGTGCAAGCAAATTCGAACGCCGGCCGGTCCGCGAAGGATAANGATGAC ]
[+] EMBL C26498 [AGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCG CACGGTGGCGAAGAAGGNTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTNGCCGGCATCCTGAGCAACTACAACTACAAGCNCGCGGCTACCGGNNAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCNTNGACGAGGCGCACAAGCTCGTCGAGTCCTACTNCGGAGACGGCCAGAT ]
[+] EMBL AK107024 [ GCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCACGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTCGCC GCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACAAGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGGTGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGAACCTCCTCGCCGCCCAAGGCGCAGGCACGGCGAAGAAGA TCGATGAGCTGCACCTTGTGG TCGTGGATCG CAATCACC ACCGTGCAAGC AATTCGAACGCCGGC GTCCGCG AGGATAA GATGACCAGTCATCAGCACGCCGCTCCTGGTTATAGCCGCCCAAACAATTCAGCACGAATGAAGCAGAACACCGCCGGCATCATGTTCGGCAACCACACCGCTTCCGATCATGGCCGCCGCTTAAACAGTTCAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATTCAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGCTAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTGCCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGATAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTCTCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGAACGGCAACAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGAAGGCTTCCACCGCGGCTACGGCTAGGCCGCCATTACAGGGCTCCTACTCCGACGCCGGCGTCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATCCAACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATCTAAGCTCCGGCAGAGGACGCAGCCTGTGCTTGATCCATGACCCTGCATCTGCATGATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAGTATGTACTATATGCCTATACGATTAATATCATTAAACTTTAATGCTACAGGACAGTATCCCGTTCGGATGATACTCGAAAATATAGGCGATACCTCATATGTATCATCCCATCCGTACTGTCGTGTAA]
[+] EMBL CB001005 [ GCCGCCGCTTAAACAGTTCAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATTCAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGCTAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTGCCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGATAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTCTCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGAACGGCAATAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGAAGGCTTCCACCGCGGCTACGGCTAGGGCGCCATTGCAGGGCTCCTACTCCGACGCCGG ]
[+] EMBL AU166450 [ ACTCCGACGCCGGCGTCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATCCAACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATNTAAGCTCCGGCAGAGGACGCAGCCTGTGCTTGATCCATGACCCTGCATCTGCATGATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAaaaaa ]
consensusID : consensus_9499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[ATGGACTGAAGGAGTAGAAAATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF308093 [ATGGACTGAAGGAGTAGAAAATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9499#0 AGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCA 60
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGC 120
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 GGCGAGTCGCCGGCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGG 180
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACA 240
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 AGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGG 300
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 TGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGGACCTCCTCG 360
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CCGCCCAAGGCGCAGGCACGGCGAAGAAGATNGATGAGCTGCACCTTGTGGTCGTGGATC 420
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 GCAATCACCACCGTGCAAGCAATTCGAACGCCGGCGTCCGCGAGGATAAGATGACCAGTC 480
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 ATCAGCACGCCGCTCCTGGTTATAGCCGCCCAAACAATTCAGCACGAATGAAGCAGAACA 540
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CCGCCGGCATCATGTTCGGCAACCACACCGCTTCCGATCATGGCCGCCGCTTAAACAGTT 600
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATT 660
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGC 720
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 TAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTG 780
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAA 840
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 GATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCA 900
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 ACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGA 960
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 TAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTC 1020
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 TCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGA 1080
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 ACGGCAACAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGA 1140
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 AGGCTTCCACCGCGGCTACGGCTAGGCCGCCATTACAGGGCTCCTACTCCGACGCCGGCG 1200
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 TCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATC 1260
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CAACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATCTAAGCTCCGG 1320
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CAGAGGACGCAGCCTGTGCTTGATCCATG-ACCCTGCATCTGCATGATTCCTCGAACCGA 1379
consensus_9499#1 --------------------------ATGGACTGAAGGAGTAGAAAATTCCTCGAACCGA 34
*** ** * * **************
consensus_9499#0 TCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGT 1439
consensus_9499#1 TCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGT 94
************************************************************
consensus_9499#0 GATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTA 1499
consensus_9499#1 GATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTA 154
************************************************************
consensus_9499#0 GCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCA 1559
consensus_9499#1 GCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCA 214
************************************************************
consensus_9499#0 TGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTT 1619
consensus_9499#1 TGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTT 274
************************************************************
consensus_9499#0 ACTAAAGTATGTACTATATGCCTATACGATTAATATCATTAAACTTTAATGCTACAGGAC 1679
consensus_9499#1 ACTAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 304
****** * * * * * * *
consensus_9499#0 AGTATCCCGTTCGGATGATACTCGAAAATATAGGCGATACCTCATATGTATCATCCCATC 1739
consensus_9499#1 ------------------------------------------------------------
consensus_9499#0 CGTACTGTCGTGTAA 1754
consensus_9499#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||